BAC Information

Click to search

BAC

Clone NameB6Ng01-174F16
Chromosome1 (Build37)
Map Location 133,961,106 - 134,097,545
singlet/doubletdoublet
Overlap geneMfsd4, Pctk3, LOC100042221
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174F16.bB6Ng01-174F16.g
ACCGA002458GA002459
length811618
definitionB6Ng01-174F16.b B6Ng01-174F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,961,106 - 133,961,912)(134,096,932 - 134,097,545)
sequence
gaattcaacttaaaagaacagataaggaaggtatcaattggcagatgtag
acatcaagaaccacttagtataggtgagaagctatggagaggctgggagt
ctttggagaagatctcaaatcatgtatctattgatgtccctgagataaga
gggtttctcagttgccctgagtggttagacaggtcccacaaaaccaggaa
aaaaaaaaaacccaccaccaacaaaacccctaacttttggtctaaatacc
tattacctcttttgtaaaccacaagcctagccaccctgccaaacaggtag
ctttctaagtctcttctcgagatttcctctttgtgctcaacaagagtttt
ccaagggaggctctagttcaggttcttgtggctgctcttcctcctgctgg
tcctgcagatggcctgctttaaaggtcaaagtctttgtctctgctaagag
tagggaaggaagactggtgttgccctaaggacctaccccaaagcctgccc
cacagaggtgtctagaaggcccctgtgggccagagctctcggattaggct
aagcagtagacagcacttaagcagaactctaaagaaaggcagtctggtgt
gtcactcccacaccatctctatacagctggtccttgagatttgttaaggc
aatcccctattcccagtgccagcctggcacactgactggtaatcacttaa
gctgaaaaagcacttccttgcagggacattagcatttcaacagagacagg
caaggccacatcagggctggcagagctttctgttcatgttgggggtgggg
gattggggaga
gaattcaaaaggaagggggtgaattgggttttctcccacctcctccctcc
cctctccccagccagctccatgcttcacacccaccccttccccccaaagc
ctggcctccaggtttctgggaactgtagtctgcaaggcagtgttgataaa
caggcagacccagggtgggtggggcacaaactacagatcccaagacctct
tcccaaagctgccatctgccaagctgggcacagggcactcctctggagaa
gcccgtgttctccttggaagttaaccctttcttagattgtgagagaagga
gcaccatgaatctgggatccaaggcctctctgcctcccttggcctgtaga
ggccgcagtacctggtctgccttccctcctcctaatagcttgcttgtcta
cttattgaaaaaaaaaaagccccctccgcaagactacaaggacagccaag
tggcccctacaaggacagagagttgttctgagggacttagagggcatggt
agctgggagtaaggatcaggataacaataatgtcattgcaccccgagtca
ggggtcagcagagcttaccgcttgactccctggttggagaggaggagccc
agcaaccctgacgtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133961106_133961912
seq2: B6Ng01-174F16.b_46_856

seq1  GAATTCAACTTAAAAGAACAGATAAGGAAGGTATCAATTGGCAGATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTAAAAGAACAGATAAGGAAGGTATCAATTGGCAGATGTAG  50

seq1  ACATCAAGAACCACTTAGTATAGGTGAGAAGCTATGGAGAGGCTGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGAACCACTTAGTATAGGTGAGAAGCTATGGAGAGGCTGGGAGT  100

seq1  CTTTGGAGAAGATCTCAAATCATGTATCTATTGATGTCCCTGAGATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGAAGATCTCAAATCATGTATCTATTGATGTCCCTGAGATAAGA  150

seq1  GGGTTTCTCAGTTGCCCTGAGTGGTTAGACAGGTCCCACAAAACCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCAGTTGCCCTGAGTGGTTAGACAGGTCCCACAAAACCAGGAA  200

seq1  AAAAAAAAAACCCACCACCAACAAAACCCCTAACTTTTGGTCTAAATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCCACCACCAACAAAACCCCTAACTTTTGGTCTAAATACC  250

seq1  TATTACCTCTTTTGTAAACCACAAGCCTAGCCACCCTGCCAAACAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTCTTTTGTAAACCACAAGCCTAGCCACCCTGCCAAACAGGTAG  300

seq1  CTTTCTAAGTCTCTTCTCGAGATTTCCTCTTTGTGCTCAACAAGAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAGTCTCTTCTCGAGATTTCCTCTTTGTGCTCAACAAGAGTTTT  350

seq1  CCAAGGGAGGCTCTAGTTCAGGTTCTTGTGGCTGCTCTTCCTCCTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAGGCTCTAGTTCAGGTTCTTGTGGCTGCTCTTCCTCCTGCTGG  400

seq1  TCCTGCAGATGGCCTGCTTTAAAGGTCAAAGTCTTTGTCTCTGCTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGATGGCCTGCTTTAAAGGTCAAAGTCTTTGTCTCTGCTAAGAG  450

seq1  TAGGGAAGGAAGACTGGTGTTGCCCTAAGGACCTACCCCAAAGCCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGGAAGACTGGTGTTGCCCTAAGGACCTACCCCAAAGCCTGCCC  500

seq1  CACAGAGGTGTCTAGAAGGCCCCTGTGGGCCAGAGCTCTCGGATTAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTGTCTAGAAGGCCCCTGTGGGCCAGAGCTCTCGGATTAGGCT  550

seq1  AAGCAGTAGACAGCACTTAAGCAGAACTCTAAAGAAAGGCAGTCTGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGACAGCACTTAAGCAGAACTCTAAAGAAAGGCAGTCTGGTGT  600

seq1  GTCACTCCCACACCATCTCTATACAGCTGGTCCTTGAGATTTGTTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCCACACCATCTCTATACAGCTGGTCCTTGAGATTTGTTAAGGC  650

seq1  AATCCCCTATTCCCAGTGCCAGCCTGGCACACTGACTGGTAATCACTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTATTCCCAGTGCCAGCCTGGCACACTGACTGGTAATCACTTAA  700

seq1  GCTG-AAAAGCACTTCCTTGCAGGGACATTAGCATTTCAACAGAGACAGG  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAAGCACTTCCTTGCAGGGACATTAGCATTTCAACAGAGACAGG  750

seq1  CAAGGCCACATCAGGGCTGGCAGAGC-TTCTGTTCATGTTGGGGGTGGGG  798
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAGGCCACATCAGGGCTGGCAGAGCTTTCTGTTCATGTTGGGGGTGGGG  800

seq1  --ATGGGGAGA  807
         ||||||||
seq2  GATTGGGGAGA  811

seq1: chr1_134096932_134097545
seq2: B6Ng01-174F16.g_71_688 (reverse)

seq1  TTCTACGTCA-GGTTCCT-GGCTCCTCCTCTCCAGCCA-GGAGTC-AGCG  46
      |||||||||| |||| || ||||||||||||||| ||| |||||| ||||
seq2  TTCTACGTCAGGGTTGCTGGGCTCCTCCTCTCCAACCAGGGAGTCAAGCG  50

seq1  GTAAGCTCTGCTGACCCCTGACTCGGGGTGCAATGACATTATTGTTATCC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCTGCTGACCCCTGACTCGGGGTGCAATGACATTATTGTTATCC  100

seq1  TGATCCTTACTCCCAGCTACCATGCCCTCTAAGTCCCTCAGAACAACTCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTACTCCCAGCTACCATGCCCTCTAAGTCCCTCAGAACAACTCT  150

seq1  CTGTCCTTGTAGGGGCCACTTGGCTGTCCTTGTAGTCTTGCGGAGGGGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTGTAGGGGCCACTTGGCTGTCCTTGTAGTCTTGCGGAGGGGGC  200

seq1  TTTTTTTTTTTCAATAAGTAGACAAGCAAGCTATTAGGAGGAGGGAAGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCAATAAGTAGACAAGCAAGCTATTAGGAGGAGGGAAGGC  250

seq1  AGACCAGGTACTGCGGCCTCTACAGGCCAAGGGAGGCAGAGAGGCCTTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTACTGCGGCCTCTACAGGCCAAGGGAGGCAGAGAGGCCTTGG  300

seq1  ATCCCAGATTCATGGTGCTCCTTCTCTCACAATCTAAGAAAGGGTTAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATTCATGGTGCTCCTTCTCTCACAATCTAAGAAAGGGTTAACT  350

seq1  TCCAAGGAGAACACGGGCTTCTCCAGAGGAGTGCCCTGTGCCCAGCTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGAACACGGGCTTCTCCAGAGGAGTGCCCTGTGCCCAGCTTGG  400

seq1  CAGATGGCAGCTTTGGGAAGAGGTCTTGGGATCTGTAGTTTGTGCCCCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCAGCTTTGGGAAGAGGTCTTGGGATCTGTAGTTTGTGCCCCAC  450

seq1  CCACCCTGGGTCTGCCTGTTTATCAACACTGCCTTGCAGACTACAGTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGGGTCTGCCTGTTTATCAACACTGCCTTGCAGACTACAGTTCC  500

seq1  CAGAAACCTGGAGGCCAGGCTTTGGGGGGAAGGGGTGGGTGTGAAGCACG  546
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAAACCTGGAGGCCAGGCTTTGGGGGGAAGGGGTGGGTGTGAAGCATG  550

seq1  GAGCTGGCTGGGGAGAGGGGAGGGAGGAGGTGGGAGAAAACCCAATTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCTGGGGAGAGGGGAGGGAGGAGGTGGGAGAAAACCCAATTCAC  600

seq1  CCCCTTCCTTTTGAATTC  614
      ||||||||||||||||||
seq2  CCCCTTCCTTTTGAATTC  618