BAC Information

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BAC

Clone NameB6Ng01-174I04
Chromosome1 (Build37)
Map Location 85,065,810 - 85,116,558
singlet/doubletdoublet
Overlap geneA530032D15Rik, LOC100039742
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I04.bB6Ng01-174I04.g
ACCGA002571GA002572
length917696
definitionB6Ng01-174I04.b B6Ng01-174I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,065,810 - 85,066,719)(85,115,862 - 85,116,558)
sequence
gaattccatcactagggggcagactttgaggtctaggtagttcaaaccag
acctagaggttcacagtcaactttctgctgccttctaatccagttgtaaa
actctcagctactgctccagcaccatgtcagccagcatgctgccatgctt
cctgccatgatgataatggactagacctctgaaccgtaagccagacccaa
tgaaaacaaatttttttataagagttgccctggtcatgttatatcttccc
agcaataaaaccctaactaagacaactagccataaaacaagatttttaca
taatctgactaatattcctagcatgtagataaaagaagttcctgaaataa
aatatttagtccacttgcctctataacaataatgacattgactcatcaaa
gggataatgtagtagggattgaattgaattgaataaactaagagaatgcc
acatcctgtaaattaagcagtgagcataccatgaactgaagaatctggag
agatttctgtccagagggcccagagcctgtggtagggcctctgaaatggc
aggatatgactacagatgaccaggcaagtgggttcaaggaagaaaacaaa
aaacaaaaaataatctgtagcttttggaaccctgtagaaaatcccacaag
accaaagagatgggcatgtgagacatgagccactatcactaaaatccaag
gactgtagtcatgtcagtcactcagggttggagattggtatggtaagttt
attcttgaacttgatataatctagaaattataggggttttgagtagatat
ggctctccataggctaataatgtgttttgaatgctttggctcataggaag
tagcactattaggagatgtgacctttgtttggagtgggtgtgggccttgt
ttggaggtggggtttta
gaattccccaggtttccatccttagctacagtctgtccagatgactagag
tcactctcctgctgcagtttccacctgtgtccttagcttcatgtgcctcg
cctctccttagctcctcgggttctaatgctcagccacgtctcctctgcaa
cccaccctccaatcgccctttgctccttctttggaacttccattttatat
aacagtctccatacgccacagacctggggcttcagcctgcctttgtctta
tctctcaccttccaaatccatcccatcgtcagtcctatggatactcactt
taagtttattcaaatttttcctgctccagtaaggtccatcaaatatacca
aatagggtgttggtaattttttaatggtcatatacgaggaagtattgaag
gctgccactcagctccatgaagatccttaaagcagagggggaaagaacag
gagctgaccaccacaatggactgtttctgaaagtcccctctccctaaatc
ctgatagatgggaaatgtaactgtcacttggcacagatgtgtgtgaattt
caagcttaaaagctctgtacattctgattggggtcacaggtcagcttccc
gtatcactgttctgtatccccgatcaatcaatagatgcttgattacaata
agttttttgttgtggccatagacctggtatttgagttgtgttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85065810_85066719
seq2: B6Ng01-174I04.b_45_961

seq1  GAATTCCATCACTAGGGGGCAGACTTTGAGTTCTAGGTAGTTCAAACAAG  50
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  GAATTCCATCACTAGGGGGCAGACTTTGAGGTCTAGGTAGTTCAAACCAG  50

seq1  ACCTAGAGGTTCACAGTCAACTTTCTGCTGCCTTCTAATCCAGTTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGGTTCACAGTCAACTTTCTGCTGCCTTCTAATCCAGTTGTAAA  100

seq1  ACTCTCAGCTACTGCTCCAGCACCATGTCAGCCAGCATGCTGCCATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCTACTGCTCCAGCACCATGTCAGCCAGCATGCTGCCATGCTT  150

seq1  CCTGCCATGATGATAATGGACTAGACCTCTGAACCGTAAGCCAGACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGATGATAATGGACTAGACCTCTGAACCGTAAGCCAGACCCAA  200

seq1  TGAAAACAAAATTTTTTATAAGAGTTGCCCTGGTCATGTTATATCTTCAC  250
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TGAAAACAAATTTTTTTATAAGAGTTGCCCTGGTCATGTTATATCTTCCC  250

seq1  AGCAATAAAACCCTAACTAAGACAACTAGCCATAAAACAAGATTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAACCCTAACTAAGACAACTAGCCATAAAACAAGATTTTTACA  300

seq1  TAATCTGACTAATATTCCTAGCATGTAGATAAAAGAAGTTTCTGAAATAA  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATCTGACTAATATTCCTAGCATGTAGATAAAAGAAGTTCCTGAAATAA  350

seq1  AATATTTAGTCTACTTGCCTCTATAACAATAATGACATTGACTCATCTAA  400
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AATATTTAGTCCACTTGCCTCTATAACAATAATGACATTGACTCATCAAA  400

seq1  GGGATAATGTACTAGGGATTGAATTGAATTGAATAAACTAAGAGAATACC  450
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  GGGATAATGTAGTAGGGATTGAATTGAATTGAATAAACTAAGAGAATGCC  450

seq1  ACATCCTGTAAATTAAGCAGTGAGCATACCATGAACTGAACAATCTGGAG  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATCCTGTAAATTAAGCAGTGAGCATACCATGAACTGAAGAATCTGGAG  500

seq1  AGATTTCTGTCTAGAGGGCCCAGAGCCTGTGGTAGGGCCTCTGAAATGGC  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGTCCAGAGGGCCCAGAGCCTGTGGTAGGGCCTCTGAAATGGC  550

seq1  AGGATATGACTACAGATGACCAGGCAAGTGGGTTCAAGGAAGAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGATATGACTACAGATGACCAGGCAAGTGGGTTCAAGGAAGAAAAC-AA  599

seq1  AAAACAAAAAACAATCTGTAGCTTTTGGAACCCTGTAGAAAATCCCACAA  650
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAATAATCTGTAGCTTTTGGAACCCTGTAGAAAATCCCACAA  649

seq1  GACCAAAGAGATGGGCATGTGAGACATGAGTCACTGTCACTAAAATCCAA  700
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  GACCAAAGAGATGGGCATGTGAGACATGAGCCACTATCACTAAAATCCAA  699

seq1  GGACTGTAGTCATGTCAGTCACTCAGGGTTGGAGATTGGTATGGTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAGTCATGTCAGTCACTCAGGGTTGGAGATTGGTATGGTAAGTT  749

seq1  TATTCTTGAACTTGATATAATCTAG-AATTGTAGGGG-TTTGAGTAGATA  798
      ||||||||||||||||||||||||| |||| |||||| ||||||||||||
seq2  TATTCTTGAACTTGATATAATCTAGAAATTATAGGGGTTTTGAGTAGATA  799

seq1  TGGCTCTCCATAGGCTAATAATGTG-TTTGAATGC-TTGGCTCATAGGAA  846
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TGGCTCTCCATAGGCTAATAATGTGTTTTGAATGCTTTGGCTCATAGGAA  849

seq1  GTAGCACTATTAGGAGATGTGACCTT--GTTGGAGTGGGTGT-GGCCTTG  893
      ||||||||||||||||||||||||||   ||||||||||||| |||||||
seq2  GTAGCACTATTAGGAGATGTGACCTTTGTTTGGAGTGGGTGTGGGCCTTG  899

seq1  -TTGGAGGTGGGGTTTTA  910
       |||||||||||||||||
seq2  TTTGGAGGTGGGGTTTTA  917

seq1: chr1_85115862_85116558
seq2: B6Ng01-174I04.g_68_763 (reverse)

seq1  ATCCAACACAACTCAAATACCAGGTCTATGGCCACAACAAAAAACTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACACAACTCAAATACCAGGTCTATGGCCACAACAAAAAACTTATT  50

seq1  GTAATCAAGCATCTATTGATTGATCTGGGATACAGAACAGTGAT-CGGG-  98
      ||||||||||||||||||||||||| |||||||||||||||||| |||| 
seq2  GTAATCAAGCATCTATTGATTGATCGGGGATACAGAACAGTGATACGGGA  100

seq1  AGCTGACCTGTGACCCCAAGCCAGAATGTTACAGAGCTTTTAAGCTTGAA  148
      |||||||||||||||||||  ||||||| |||||||||||||||||||||
seq2  AGCTGACCTGTGACCCCAA-TCAGAATG-TACAGAGCTTTTAAGCTTGAA  148

seq1  ATTCACACACATCTGTGCCAAGTGACAGTTACATTTCCCATCTATCAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACACATCTGTGCCAAGTGACAGTTACATTTCCCATCTATCAGGA  198

seq1  TTTAGGGAGAGGGGACTTTCAGAAACAGTCCATTGTGGTGGTCAGCTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGAGGGGACTTTCAGAAACAGTCCATTGTGGTGGTCAGCTCCT  248

seq1  GTTCTTTCCCCCTCTGCTTTAAGGGTCTTCATGGAGCTGAGTGGCAGCCT  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCTTTCCCCCTCTGCTTTAAGGATCTTCATGGAGCTGAGTGGCAGCCT  298

seq1  TCAATACTTCCTCGTATATGACCATTAAAAAAATTACCAACACCCTATTT  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAATACTTCCTCGTATATGACCATT-AAAAAATTACCAACACCCTATTT  347

seq1  GGTATATTTGATGGACCTTACTGGAGCAGGAAAAATTTGAATAAACTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTGATGGACCTTACTGGAGCAGGAAAAATTTGAATAAACTTAA  397

seq1  AGTGAGTATCCATAGGACTGACGATGGGATGGATTTGGAAGGTGAGAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATCCATAGGACTGACGATGGGATGGATTTGGAAGGTGAGAGAT  447

seq1  AAGACAAAGGCAGGCTGAAGCCCCGGGTCTGTGGCGTATGGAGCCTGTTA  498
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  AAGACAAAGGCAGGCTGAAGCCCCAGGTCTGTGGCGTATGGAGACTGTTA  497

seq1  TATAAAATGGAAGTTCCAAAGAAGGAGCAGAGTGCGATTGGAGGGTGGGT  548
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  TATAAAATGGAAGTTCCAAAGAAGGAGCAAAGGGCGATTGGAGGGTGGGT  547

seq1  TGCAGAGGAGACGTGGCTGAGCATTAGAACCCGAGGAGCTAAGGAGAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAGACGTGGCTGAGCATTAGAACCCGAGGAGCTAAGGAGAGGC  597

seq1  GAGGCACATGAAGCTAAGGACACAGGTGGAAACTGCAGCAGGAGAGTGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACATGAAGCTAAGGACACAGGTGGAAACTGCAGCAGGAGAGTGAC  647

seq1  TCTGATCATCTGGACAGACTGTAGCTAAGGATGGAAACTTGGGGAATTC  697
      |||  ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTAGTCATCTGGACAGACTGTAGCTAAGGATGGAAACCTGGGGAATTC  696