BAC Information

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BAC

Clone NameB6Ng01-174J05
Chromosome1 (Build37)
Map Location 71,704,490 - 71,877,361
singlet/doubletdoublet
Overlap geneGabarapl2-ps1_652.1, LOC383528
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J05.bB6Ng01-174J05.g
ACCGA002621GA002622
length579733
definitionB6Ng01-174J05.b B6Ng01-174J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,704,490 - 71,705,074)(71,876,624 - 71,877,361)
sequence
tcaggaacatcccattgtcctgacaaacgagaatctatggctcagaaaat
ctctagaatggcattttctaagtcaccagtcttaaagaaatggtgtatca
cttcgaactctctcttttgcaacaaaagcacccataaagcagttaattga
ctacaggatatgggaagatgtcatggccaacatgagactaaccatctaag
agacgtcacacataaagctatgcactggcttctgcttgctgattaggact
gttcagtcaagtggcaatctgactaattttttggtggacaagtacggggt
cggggagggggattgaatcagggtcttgaccacatcaagcatactctgct
gagccccaagtcccttgtgcctagtttgggcattttgcaacaaatgtgaa
agactaggaactctctcctagcctgaaagtttggtgggaatggtctgtct
tagagttggcttctcgaggctcagcgctatcctccgtgctacctgggatc
gagcacttggtaaatgaagaaaatgtctaaggagtgcttttctggccaca
cggagacaacggccggggtgggtgagggg
gaattcatctgccctcgggaaaactatagaccatggaagaacaccttata
catatacatatacatatacatatacatatacatatacatatacatataca
tatacatatacatatacatatacccaagtgtgcagttcctgcatagctta
gcgactgtctccaaacgagggaatgtccagagtcaagactggcgtgtcac
atggatgtggggatcagtggcagcttctggaacaattcgcagctagacag
agacaggaaggatatgagtcaggactaaccagacagacagagatgaggaa
atatagaggccggggggaaaaacaaaaaacaaaaaaaaaacaatgggagc
aagtgctcaaaatggaaggagccttgaagagttaaagaacttaaccccca
taaaacatacacacacacacacacacacacacacacacacgcacacacgc
acgcacgcacgcacaccatttcttttaactagactgtgggctggggcagc
atcctgaaggacttcgcaggttgcattccagagttctgcctccaacttta
agggaagtgagggccgacaacaaaggattagcatctatcttaaagtagta
acacttttaagaggaattaaacctacggaaaaaagaaagggggtggtaaa
taattttttatttttgtttgtttgtttctgtttttacgagacaggtttct
atatgtagccctggctgtcctggaactcactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71704490_71705074
seq2: B6Ng01-174J05.b_44_628

seq1  GAATTCTCAGGAACATCCCATTGTCCTGACAAACGAGAATCTATGGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAACATCCCATTGTCCTGACAAACGAGAATCTATGGCTCA  50

seq1  GAAAATCTCTAGAATGGCATTTTCTAAGTCACCAGTCTTAAAGAAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCTAGAATGGCATTTTCTAAGTCACCAGTCTTAAAGAAATGGT  100

seq1  GTATCACTTCGAACTCTCTCTTTTGCAACAAAAGCACCCATAAAGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTTCGAACTCTCTCTTTTGCAACAAAAGCACCCATAAAGCAGTT  150

seq1  AATTGACTACAGGATATGGGAAGATGTCATGGCCAACATGAGACTAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTACAGGATATGGGAAGATGTCATGGCCAACATGAGACTAACCA  200

seq1  TCTAAGAGACGTCACACATAAAGCTATGCACTGGCTTCTGCTTGCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGACGTCACACATAAAGCTATGCACTGGCTTCTGCTTGCTGATT  250

seq1  AGGACTGTTCAGTCAAGTGGCAATCTGACTAATTTTTTGGTGGACAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTTCAGTCAAGTGGCAATCTGACTAATTTTTTGGTGGACAAGTA  300

seq1  CGGGGTCGGGGAGGGGGATTGAATCAGGGTCTTGACCACATCAAGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCGGGGAGGGGGATTGAATCAGGGTCTTGACCACATCAAGCATAC  350

seq1  TCTGCTGAGCCCCAAGTCCCTTGTGCCTAGTTTGGGCATTTTGCAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAGCCCCAAGTCCCTTGTGCCTAGTTTGGGCATTTTGCAACAAA  400

seq1  TGTGAAAGACTAGGAACTCTCTCCTAGCCTGAAAGTTTGGTGGGAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGACTAGGAACTCTCTCCTAGCCTGAAAGTTTGGTGGGAATGGT  450

seq1  CTGTCTTAGAGTTGGCTTCTCGAGGCTCAGCGCTATCCTCCGTGCTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGAGTTGGCTTCTCGAGGCTCAGCGCTATCCTCCGTGCTACCT  500

seq1  GGGATCGAGCACTTGGTAAATGAAGAAAATGTCTAAGGAGTGCTTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGAGCACTTGGTAAATGAAGAAAATGTCTAAGGAGTGCTTTTCTG  550

seq1  GCCACACGGAGACAACGGCCGGGGTGGGTGAGGGG  585
      |||||||||||||||||||||||||||||||||||
seq2  GCCACACGGAGACAACGGCCGGGGTGGGTGAGGGG  585

seq1: chr1_71876624_71877361
seq2: B6Ng01-174J05.g_70_801 (reverse)

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTACATATAGAAACCCTGTCTCG-AA  49
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTACATATAGAAA-CCTGTCTCGTAA  49

seq1  AAACAAAAACAAACAAACAAAAATAAAAAATTATTTACCACCCCCTTTCT  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAACAAACAAACAAAAATAAAAAATTATTTACCACCCCCTTTCT  99

seq1  TTTTTCCGTAGGTTTAATTCCTCTTAAAAGTGTTACTACTTTAAGATAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGTAGGTTTAATTCCTCTTAAAAGTGTTACTACTTTAAGATAGA  149

seq1  TGCTAATCCTTTGTTGTCGGCCCTCACTTCCCTTAAAGTTGGAGGCAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCCTTTGTTGTCGGCCCTCACTTCCCTTAAAGTTGGAGGCAGAA  199

seq1  CTCTGGAATGCAACCTGCGAAGTCCTTCAGGATGCTGCCCCAGCCCACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATGCAACCTGCGAAGTCCTTCAGGATGCTGCCCCAGCCCACAG  249

seq1  TCTAGTTAAAAGAAATGGTGTGCGTGCGTGCGTGCGTGTGTGCGTGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTAAAAGAAATGGTGTGCGTGCGTGCGTGCGTGTGTGCGTGTGTG  299

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTATGTTTTATGGGGGTTAAGTTCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTATGTTTTATGGGGGTTAAGTTCTTT  349

seq1  AACTCTTCAAGGCTCCTTCCATTTTGAGCACTTGCTCCCATTGTTTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCAAGGCTCCTTCCATTTTGAGCACTTGCTCCCATTGTTTTTTT  399

seq1  TTTGTTTTTTGTTTTTCCCCCCGGCCTCTATATTTCCTCATCTCTGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGTTTTTCCCCCCGGCCTCTATATTTCCTCATCTCTGTCTG  449

seq1  TCTGGTTAGTCCTGACTCATATCCTTCCTGTCTCTGTCTAGCTGCGAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTAGTCCTGACTCATATCCTTCCTGTCTCTGTCTAGCTGCGAATT  499

seq1  GTTCCAGAAGCTGCCACTGATCCCCACATCCATGTGACACGCCAGTCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAAGCTGCCACTGATCCCCACATCCATGTGACACGCCAGTCTTG  549

seq1  ACTCTGGACATTCCCTCGTTTGGAGACAGTCGCTAAGCTATGCAGGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACATTCCCTCGTTTGGAGACAGTCGCTAAGCTATGCAGGAACT  599

seq1  GCACACTTGGGTATATGTATATGTATATGTATATGTATATGTATATGTAT  649
      ||||||||||      ||||||||||||||||||||||||||||||||||
seq2  GCACACTTGG------GTATATGTATATGTATATGTATATGTATATGTAT  643

seq1  ATGTATATGTATATGTATATGTATATGTATATGTATATGTATAAGGTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTATATGTATATGTATATGTATATGTATATGTATAAGGTGTT  693

seq1  CTTCCATGGTCTATAGTTTTCCCGAGGGCAGATGAATTC  738
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGGTCTATAGTTTTCCCGAGGGCAGATGAATTC  732