BAC Information

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BAC

Clone NameB6Ng01-175I20
Chromosome1 (Build37)
Map Location 30,194,987 - 30,328,870
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I20.bB6Ng01-175I20.g
ACCGA003325GA003326
length559818
definitionB6Ng01-175I20.b B6Ng01-175I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,194,987 - 30,195,547)(30,328,317 - 30,328,870)
sequence
tcaagcccagaacagtactgtcatagcaggaccagaagctgtgcctgcct
ggtcttcctcttccagtactgaaataattcataatctctttaagattagc
agaagtttttttttttcatgctccaagggtatctgtcatcaagagaaatt
ggtggatgaaaattatatccaatatatatacaggaatatagcaaaatatt
agttatagtagtagtagtaatagtagtaaagcaagaatgtatctatgatt
acagtgaatttataaatgtagagaggtaatatacacacagaacagagaga
tatagatagatatagatatagatatagatatagatatagatatagatgat
atagatatagatattagcctggggaagagaatatgatttataaaaggaga
gattccttagctattttctaaaatgaaaatacacaagaagacacagagaa
ggaaatcttaataaataaggtgatatattttattttattttattttattt
tattttattttatggtgataggctggtaccaaaatacataaattttataa
gttcaggat

gaattcatggccactgatgaaataatggtgcaaatatgatgggagtaacc
aactactttctgattacaattaagacctgcttcccaagatgacagtcata
tctggacccattaacagggccaaaaacctggggggttgaaaggcacagac
catacagaaaaaattactaaagttaatctactaaattcaggcagcactaa
atgacttattgttatatatatagatctttgcatccctcagtattcatcag
agaatcttctatttgcagtagatggtaattaataaagaaactcagagcta
cataaggaccctcctccaatggtttagaaatgattgtaaagaggggatag
aaggagtataagaactagaggtggatataactacaagtcttctggataaa
acaggatagctgaccataaaaaaaacccaagtatttgtgatgtgtgcaag
cttaaacaatatcaattctagacatgaaaaccactggtcctatctctcgt
caagccacttgctaagttttagatgaaagagagtcagttttctttgagta
tatgccctgacaaagttggccttacttcagtgaaagtacacactttaaga
ataaatgggaagcaaatttagactttatggttgaaaaaaaccaaaaaggc
cacagagttgggtatgtagggaagggatagatctcataaatattgtagga
agagtgcacatgatcaaaatattttatatgaaaatttcaaagaactaata
aaaaggcattaataataatccttgcactgagaagaggcactgggtaaatt
gacttcctagttgattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30194987_30195547
seq2: B6Ng01-175I20.b_35_598

seq1  GAATTCTCAAGCCCAGAACAGTACTGTCATAGCAGGACCAGAAGCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGCCCAGAACAGTACTGTCATAGCAGGACCAGAAGCTGTGC  50

seq1  CTGCCTGGTCTTCCTCTTCCAGTACTGAAATAATTCATAATCTCTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTCTTCCTCTTCCAGTACTGAAATAATTCATAATCTCTTTAAG  100

seq1  ATTAGCAGAAGTTTTTTTTTTTCATGCTCCAAGGGTATCTGTCATCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGAAGTTTTTTTTTTTCATGCTCCAAGGGTATCTGTCATCAAGA  150

seq1  GAAATTGGTGGATGAAAATTATATCCAATATATATACAGGAATATAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTGGATGAAAATTATATCCAATATATATACAGGAATATAGCAA  200

seq1  AATATTAGTTATAGTAGTAGTAGTAATAGTAGTAAAGCAAGAATGTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTTATAGTAGTAGTAGTAATAGTAGTAAAGCAAGAATGTATCT  250

seq1  ATGATTACAGTGAATTTATAAATGTAGAGAGGTAATATACACACAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACAGTGAATTTATAAATGTAGAGAGGTAATATACACACAGAACA  300

seq1  GAGAGATATAGATAGATATAGATATAGATATAGATATAGATATAGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATAGATAGATATAGATATAGATATAGATATAGATATAGATATA  350

seq1  GATGATATAGATATAGATATTAGCCTGGGGAAGAGAATATGATTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATAGATATAGATATTAGCCTGGGGAAGAGAATATGATTTATAAA  400

seq1  AGGAGAGATTCCTTAGCTATTTTCTAAAATGAAAATACACAAGAAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATTCCTTAGCTATTTTCTAAAATGAAAATACACAAGAAGACAC  450

seq1  AGAGAAGGAAATCTTAATAAATAAGGTGATATATTTTATTTTATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGAAATCTTAATAAATAAGGTGATATATTTTATTTTATTTTATT  500

seq1  TTATTTTATTTTATTTTATGGTGATAGGCTGGTACCAAAA-ACATAAA-T  548
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TTATTTTATTTTATTTTATGGTGATAGGCTGGTACCAAAATACATAAATT  550

seq1  TTATAAG-TCAGGA  561
      ||||||| ||||||
seq2  TTATAAGTTCAGGA  564


seq1: chr1_30328317_30328870
seq2: B6Ng01-175I20.g_322_878 (reverse)

seq1  ATAATCAACTAGGAAGTCAATT--ACCAGTGCCTCTTCTCAGTGCAAGGA  48
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  ATAATCAACTAGGAAGTCAATTTACCCAGTGCCTCTTCTCAGTGCAAGGA  50

seq1  TTATTATT-ATGCCTTTTTATTAGTTCTTTGAAATTTTCATATAAAATAT  97
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAATGCCTTTTTATTAGTTCTTTGAAATTTTCATATAAAATAT  100

seq1  TTTGATCATGTGCACTCTTCCTACAATATTTATGAGATCTATCCCTTCCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCATGTGCACTCTTCCTACAATATTTATGAGATCTATCCCTTCCC  150

seq1  TACATACCCAACTCTGTGGCCTTTTTGGTTTTTTTCAACCATAAAGTCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACCCAACTCTGTGGCCTTTTTGGTTTTTTTCAACCATAAAGTCTA  200

seq1  AATTTGCTTCCCATTTATTCTTAAAGTGTGTACTTTCACTGAAGTAAGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTCCCATTTATTCTTAAAGTGTGTACTTTCACTGAAGTAAGGC  250

seq1  CAACTTTGTCAGGGCATATACTCAAAGAAAACTGACTCTCTTTCATCTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGTCAGGGCATATACTCAAAGAAAACTGACTCTCTTTCATCTAA  300

seq1  AACTTAGCAAGTGGCTTGACGAGAGATAGGACCAGTGGTTTTCATGTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGCAAGTGGCTTGACGAGAGATAGGACCAGTGGTTTTCATGTCTA  350

seq1  GAATTGATATTGTTTAAGCTTGCACACATCACAAATACTTGGGTTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATATTGTTTAAGCTTGCACACATCACAAATACTTGGGTTTTTTT  400

seq1  TATGGTCAGCTATCCTGTTTTATCCAGAAGACTTGTAGTTATATCCACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCAGCTATCCTGTTTTATCCAGAAGACTTGTAGTTATATCCACCT  450

seq1  CTAGTTCTTATACTCCTTCTATCCCCTCTTTACAATCATTTCTAAACCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTATACTCCTTCTATCCCCTCTTTACAATCATTTCTAAACCAT  500

seq1  TGGAGGAGGGTCCTTATGTAGCTCTGAGTTTCTTTATTAATTACCATCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGGTCCTTATGTAGCTCTGAGTTTCTTTATTAATTACCATCTA  550

seq1  CTGCAAA  554
      |||||||
seq2  CTGCAAA  557


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