BAC Information

Click to search

BAC

Clone NameB6Ng01-176E08
Chromosome1 (Build37)
Map Location 7,903,578 - 8,043,177
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176E08.bB6Ng01-176E08.g
ACCGA003850GA003851
length1,222474
definitionB6Ng01-176E08.b B6Ng01-176E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,903,578 - 7,904,823)(8,042,700 - 8,043,177)
sequence
gaattcatctaagtaaacaaagtgtatttaattagctgaatctggcccac
aaagtaggaagtattaaggggattgcctataataaatatatttcaaggaa
agtcttgagaattttctcaaactagctaagccacatagtttcctgaaagt
ttacatttctaatcacataaatggcagttttcactattcactctgattca
tttattttttgttacgtgactcccacaaatatttatatttcatgtagatt
atcattttctttcttctttatgggctaatttagtcatagtaattgagtga
caacaaaatttacagtcatattagaagaaattgataatttttagggaaat
tttggcacaaaatacaactattaggtattctcaaagcaatgaggaagaaa
agtaggaatgtccattttctacaatattttttcaggcagctgttgcatag
ttatctgtttgaggaaaaccgcacagggaaactatattagtaatgatgat
acttgttcattttagatgcacctgtattaataggaaactatgatttttac
aataattgaactcttttgaataatagcaaatgtaaagcaaagtggaaaag
tctacaacacatgagcaagcaaataaatgtcacatactgcatgtctgctc
tctaaagaaagaaggttttagttctctgaatttctctggtctcaaatatt
tcaagttaaaacatcactaaagtgttgtgtttactttagcgttttttcca
taatcaagaaagtcaaggtagcctaacataggaaggcagagttacactac
tgagaaacatgcttagtgcaaactagcctatatttaagtaaagcaaaagc
tataagcctgtatgggaaaattcacagcgaaaaggaaagattgaatgctg
gctgtgcttaaacctacccaatgtcttggatgatgaactgctagaagttc
ttgaaaggtcttgttcctcactgttgatcatcactatagactctgtccaa
atgaatcatggttaagaaagatacccaggtccactacacaatatgcagat
gtacatacattaaccatgtttttctagacctctctgtaggtagctcccag
gagatcttgtaagaatactgagatctttatcaatttgtctccactcagaa
cctaggcataggcattgcatcatctaagttagtatttgcttctgcaggaa
atttggtctggtgtatgggttg

actctgacagctcaaattctaatttattatcatatacatgacccttgctt
tccctgatgtcttgtgggtaaatttgtactccaacattgaaagacttgtt
cacatcatttctagtatatttggttaactgtccagttctttatgaatcaa
agtgacatcatattaattaatttatacttttgtggaatggaagtggtaat
cctagctcttgcattcattttgaaagctcctgtgctgattcaaactggac
aaaaatcctggaaccttcaacttcttctcttgcaaagtcaggtttgttat
tattatattcacttttcaactatttcaattttcatctgtatgtgacagag
ttaatgagagagagatggggagagggagagaaggaaagagggaaaatata
tgtgtgtgttttatacatgtttgtacacatgtatatatggttacatgttg
tacataccttccaaagactacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7903578_7904823
seq2: B6Ng01-176E08.b_40_1261

seq1  GAATTCATCTAAGTAAACAAAGTGTATTTAATTAGCTGAATCTGGCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAGTAAACAAAGTGTATTTAATTAGCTGAATCTGGCCCAC  50

seq1  AAAGTAGGAAGTATTAAGGGGATTGCCTATAATAAATATATTTCAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAAGTATTAAGGGGATTGCCTATAATAAATATATTTCAAGGAA  100

seq1  AGTCTTGAGAATTTTCTCAAACTAGCTAAGCCACATAGTTTCCTGAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAGAATTTTCTCAAACTAGCTAAGCCACATAGTTTCCTGAAAGT  150

seq1  TTACATTTCTAATCACATAAATGGCAGTTTTCACTATTCACTCTGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCTAATCACATAAATGGCAGTTTTCACTATTCACTCTGATTCA  200

seq1  TTTATTTTTTGTTACGTGACTCCCACAAATATTTATATTTCATGTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGTTACGTGACTCCCACAAATATTTATATTTCATGTAGATT  250

seq1  ATCATTTTCTTTCTTCTTTATGGGCTAATTTAGTCATAGTAATTGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCTTTCTTCTTTATGGGCTAATTTAGTCATAGTAATTGAGTGA  300

seq1  CAACAAAATTTACAGTCATATTAGAAGAAATTGATAATTTTTAGGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATTTACAGTCATATTAGAAGAAATTGATAATTTTTAGGGAAAT  350

seq1  TTTGGCACAAAATACAACTATTAGGTATTCTCAAAGCAATGAGGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCACAAAATACAACTATTAGGTATTCTCAAAGCAATGAGGAAGAAA  400

seq1  AGTAGGAATGTCCATTTTCTACAATATTTTTTCAGGCAGCTGTTGCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATGTCCATTTTCTACAATATTTTTTCAGGCAGCTGTTGCATAG  450

seq1  TTATCTGTTTGAGGAAAACCGCACAGGGAAACTATATTAGTAATGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTGAGGAAAACCGCACAGGGAAACTATATTAGTAATGATGAT  500

seq1  ACTTGTTCATTTTAGATGCACCTGTATTAATAGGAAACTATGATTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCATTTTAGATGCACCTGTATTAATAGGAAACTATGATTTTTAC  550

seq1  AATAATTGAACTCTTTTGAATAATAGCAAATGTAAAGCAAAGTGGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGAACTCTTTTGAATAATAGCAAATGTAAAGCAAAGTGGAAAAG  600

seq1  TCTACAACACATGAGCAAGCAAATAAATGTCACATACTGCATGTCTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACACATGAGCAAGCAAATAAATGTCACATACTGCATGTCTGCTC  650

seq1  TCTAAAGAAAGAAGGTTTTAGTTCTCTGAATTTCTCTGGTCTCAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAAAGAAGGTTTTAGTTCTCTGAATTTCTCTGGTCTCAAATATT  700

seq1  TCAAGTTAAAACATCACTAAAGTGTTGTGTTTACTTTAGCGTTTTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAAACATCACTAAAGTGTTGTGTTTACTTTAGCGTTTTTTCCA  750

seq1  TAATCAAGAAAGTCAAGGTAGCCTAACATAGGAAGGCAGAGTTACACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGAAAGTCAAGGTAGCCTAACATAGGAAGGCAGAGTTACACTAC  800

seq1  TGAGAAACATGCTTAGTGCAAACTAGCCTATATTTAAGTAAAGCAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACATGCTTAGTGCAAACTAGCCTATATTTAAGTAAAGCAAAAGC  850

seq1  TATAAGCCTGTATGGGAAAATTCACAGCGAAAAGGAAAGATTGAATGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCTGTATGGGAAAATTCACAGCGAAAAGGAAAGATTGAATGCTG  900

seq1  GCTGTGCTTAAACCTACCCAATGTCTTGGATGATGAACTGCTAGAAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTTAAACCTACCCAATGTCTTGGATGATGAACTGCTAGAAGTTC  950

seq1  TTGAAAGGTCTTGTTCCTCACTGTTGATCATCACTATAGACTCTGTCCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTCTTGTTCCTCACTGTTGATCATCACTATAGACTCTGTCCAA  1000

seq1  ATGAATCATGGTTAAGAAAGATACCCAGGTCCACTACACAATATGCCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGAATCATGGTTAAGAAAGATACCCAGGTCCACTACACAATATG-CAGA  1049

seq1  GTGTACATACATTTAACCATGTTTTTCCTAGACTTCCTTCCTTGTTAAGG  1100
       |||||||||| |||||||||||||| |||||| ||  ||  |||  |||
seq2  -TGTACATACA-TTAACCATGTTTTT-CTAGACCTC--TC--TGT--AGG  1090

seq1  TAGCCTTCCCA-GAGATCTTGGAAAGAAATACTGAGGAATCCTTTTTATT  1149
      ||||  ||||| ||||||||| ||   |||||||||  |||   ||||| 
seq2  TAGC--TCCCAGGAGATCTTGTAA--GAATACTGAG--ATC---TTTAT-  1130

seq1  CCATTTTGTCTCCACTCAGAAACTAGGCCATAAAGCATTTGCTATCCATC  1199
       || ||||||||||||||||| ||||| ||| | ||| |||| || ||||
seq2  -CAATTTGTCTCCACTCAGAACCTAGG-CAT-AGGCA-TTGC-AT-CATC  1174

seq1  CTAAAGTAAGGTATTTTGCTTCTGCAAGGGA-TTGGTCTG----TTGGGT  1244
         |||| | ||| |||||||||||| |  | ||||||||     |||||
seq2  --TAAGTTA-GTA-TTTGCTTCTGCAGGAAATTTGGTCTGGTGTATGGGT  1220

seq1  TG  1246
      ||
seq2  TG  1222


seq1: chr1_8042700_8043177
seq2: B6Ng01-176E08.g_62_540 (reverse)

seq1  CTGTAGTCTCT-GAAGGTATGTGCAACATGTAACCATATATACATGTGTA  49
      ||||||||| | |||||||||| |||||||||||||||||||||||||||
seq2  CTGTAGTCTTTGGAAGGTATGTACAACATGTAACCATATATACATGTGTA  50

seq1  CAAACATGTATAAAACACACACATATATTTTCCCTCTTTCCTTCTCTCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTATAAAACACACACATATATTTTCCCTCTTTCCTTCTCTCCC  100

seq1  TCTCCCCATCTCTCTCTCATTAACTCTGTCACATACAGATGAAAATTGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATCTCTCTCTCATTAACTCTGTCACATACAGATGAAAATTGAA  150

seq1  ATAGTTGAAAAGTGAATATAATAATAACAAACCTGACTTTGCAAGAGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGAAAAGTGAATATAATAATAACAAACCTGACTTTGCAAGAGAAG  200

seq1  AAGTTGAAGGTTCCAGGATTTTTGTCCAGTTTGAATCAGCACAGGAGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGGTTCCAGGATTTTTGTCCAGTTTGAATCAGCACAGGAGCTT  250

seq1  TCAAAATGAATGCAAGAGCTAGGATTACCACTTCCATTCCACAAAAGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAATGCAAGAGCTAGGATTACCACTTCCATTCCACAAAAGTAT  300

seq1  AAATTAATTAATATGATGTCACTTTGATTCATAAAGAACTGGACAGTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAATATGATGTCACTTTGATTCATAAAGAACTGGACAGTTAA  350

seq1  CCAAATATACTAGAAATGATGTGAACAAGTCTTTCAATGTTGGAGTACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATACTAGAAATGATGTGAACAAGTCTTTCAATGTTGGAGTACAA  400

seq1  ATTTACCCACAAGACATCAGGGAAAGCAAGGGTCATGTATATGATAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCACAAGACATCAGGGAAAGCAAGGGTCATGTATATGATAATAA  450

seq1  ATTAGAATTTGAGCTGTCAGAGTGAATTC  478
      |||||||||||||||||||||||||||||
seq2  ATTAGAATTTGAGCTGTCAGAGTGAATTC  479


| Home | SequenceCutter | Blast | Download |