BAC Information

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BAC

Clone NameB6Ng01-176H17
Chromosome1 (Build37)
Map Location 103,559,558 - 103,690,234
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176H17.bB6Ng01-176H17.g
ACCGA004005GA004006
length8321,126
definitionB6Ng01-176H17.b B6Ng01-176H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,689,405 - 103,690,234)(103,559,558 - 103,560,681)
sequence
gaattcttaaaattaagaaaaagtatcatatgtgttaagcagaatatgcc
aaaaccaacctcaattatcagcattataatatgcatcatctttgtatttt
tcctctattatgtaaagtgtatcgtatggtaaaacagatccatcatcact
tacttaaagagctgagtgaatgacttagagaaggggtttggtgtcatgac
tgtttactgaaatgtcagtccatcatggtaaagagggctttgtcagggac
agggtaactcatcccaagtaaggcaggaaatagtaaagagcatgcctggg
cttgcaaggttgcctttgcttcttttctctgaaacttgcattcagaacag
acctttctctgttcccacagacccacacacaagtatgaactcattggtga
cctcatcacttctcaccaaacaattagacaattaaactgtaagttctttt
ctctggtgaatatgtaacccacctctttaaatcattattattccaggtct
agctctccaaaggtgtatatcataaaagctagattaccataagataagaa
tctcattttcatacaagatttggtcctacaaaatactttaccctaaaaaa
tgtaaaatttagaagcataattacttttttatatgatacctctctgtgtg
tgtggtggctgtgtatgtatgcatgcataactgtgtatcagagtgatgcc
tctttgtgtatgtatatgtgtgtgtgtatgagagagagagagagagagag
aaagagagagagaggaggagatgcccactcattgtccatgtaacttatgc
ctatatacatgtctaaagttaggaatatgtat

gaattcaccattaggatatagacacacatgtacacacacacacacacaca
cacacacacacacacacacacacacacacacatacttattgctggttttt
gaaagcagcatgaatttgaactcagggtctcatgttgtcacagcagtatt
ttacccactgaatgatttccccagacagatttatttttagtaagcagaac
atctacctttcagtttctctgattcatgtagccatctttgattcactcag
ccatcagttgctctgattactgtgaacagaagtatcaattaaatactttc
aattacttcatcaatttttactaccctttttatgaatctcctccctacct
tggcatcctcacactctcatttcttcactgaaaccaccttggttgtgttc
aaaggatcagagaaagttaattaaaatattatctttgaggtccaagaaag
gttaggagtaaacaagaatcaggtttgacatccagaataaagttgtggat
tttgaagccataattgatacttaaccaatatccctcaaaattatatatga
aaatggaaagtaagaattcttcgatattgaagttcatttacttataaatt
ttgtatttatttatccattggggagaaaaacaccaatgctataatatgcc
tgtgtagttcagagaacagcttgtaagaaatcatttctcttcttcaactt
tgtgggtttggggatagaactcagatcatcatctctggtagcaaacacca
tctaagatgttgttattcgcttaaaattaatgaaagtctgttttgaaaac
agtggtgtcttaaatgaattttcaacagcaagtattcaaggggtttaact
gaggggacttaatttagttttcctaaattaagagaccttgtccttatgtc
cctaaacttctcaaattcgttctaaactagatataatatgaggaaatggt
ggaggaaatacaatacattattgtccccagtaagtctgtgccttgatcca
caatatgtgcagatggtaaatgctgagttcagtctttctgcaatgtcatc
tgcatcttttctgtttctggttccttctattataaataaaggtaaatgga
atctaacttaaatccagaaatttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103689405_103690234
seq2: B6Ng01-176H17.b_46_877 (reverse)

seq1  ATACATATTCATAAC-TTAGACATGTATATAGGCATAAGTTACATGGAC-  48
      |||||||||| |||| ||||||||||||||||||||||||||||||||| 
seq2  ATACATATTCCTAACTTTAGACATGTATATAGGCATAAGTTACATGGACA  50

seq1  ATGTGTTGGCATCTCCTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCT  98
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGGCATCTCCTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCT  100

seq1  CTCATACACACACACATATACATACACAAAGAGGCATCACTCTGATACAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACACACACATATACATACACAAAGAGGCATCACTCTGATACAC  150

seq1  AGTTATGCATGCATACATACACAGCCACCACACACACAGAGAGGTATCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCATGCATACATACACAGCCACCACACACACAGAGAGGTATCAT  200

seq1  ATAAAAAAGTAATTATGCTTCTAAATTTTACATTTTTTAGGGTAAAGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGTAATTATGCTTCTAAATTTTACATTTTTTAGGGTAAAGTAT  250

seq1  TTTGTAGGACCAAATCTTGTATGAAAATGAGATTCTTATCTTATGGTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGACCAAATCTTGTATGAAAATGAGATTCTTATCTTATGGTAAT  300

seq1  CTAGCTTTTATGATATACACCTTTGGAGAGCTAGACCTGGAATAATAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTTATGATATACACCTTTGGAGAGCTAGACCTGGAATAATAATG  350

seq1  ATTTAAAGAGGTGGGTTACATATTCACCAGAGAAAAGAACTTACAGTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAGGTGGGTTACATATTCACCAGAGAAAAGAACTTACAGTTTA  400

seq1  ATTGTCTAATTGTTTGGTGAGAAGTGATGAGGTCACCAATGAGTTCATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAATTGTTTGGTGAGAAGTGATGAGGTCACCAATGAGTTCATAC  450

seq1  TTGTGTGTGGGTCTGTGGGAACAGAGAAAGGTCTGTTCTGAATGCAAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGGGTCTGTGGGAACAGAGAAAGGTCTGTTCTGAATGCAAGTT  500

seq1  TCAGAGAAAAGAAGCAAAGGCAACCTTGCAAGCCCAGGCATGCTCTTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAAGAAGCAAAGGCAACCTTGCAAGCCCAGGCATGCTCTTTAC  550

seq1  TATTTCCTGCCTTACTTGGGATGAGTTACCCTGTCCCTGACAAAGCCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGCCTTACTTGGGATGAGTTACCCTGTCCCTGACAAAGCCCTC  600

seq1  TTTACCATGATGGACTGACATTTCAGTAAACAGTCATGACACCAAACCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATGATGGACTGACATTTCAGTAAACAGTCATGACACCAAACCCC  650

seq1  TTCTCTAAGTCATTCACTCAGCTCTTTAAGTAAGTGATGATGGATCTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAGTCATTCACTCAGCTCTTTAAGTAAGTGATGATGGATCTGTT  700

seq1  TTACCATACGATACACTTTACATAATAGAGGAAAAATACAAAGATGATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATACGATACACTTTACATAATAGAGGAAAAATACAAAGATGATGC  750

seq1  ATATTATAATGCTGATAATTGAGGTTGGTTTTGGCATATTCTGCTTAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAATGCTGATAATTGAGGTTGGTTTTGGCATATTCTGCTTAACA  800

seq1  CATATGATACTTTTTCTTAATTTTAAGAATTC  830
      ||||||||||||||||||||||||||||||||
seq2  CATATGATACTTTTTCTTAATTTTAAGAATTC  832


seq1: chr1_103559558_103560681
seq2: B6Ng01-176H17.g_63_1188

seq1  GAATTCACCATTAGGATATAGACACACATGTACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTAGGATATAGACACACATGTACACACACACACACACACA  50

seq1  CACACACACACACACACACACACACACACACATACTTATTGCTGGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATACTTATTGCTGGTTTTT  100

seq1  GAAAGCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATT  150

seq1  TTACCCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAAC  200

seq1  ATCTACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAG  250

seq1  CCATCAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTC  300

seq1  AATTACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCT  350

seq1  TGGCATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTC  400

seq1  AAAGGATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAG  450

seq1  GTTAGGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGAT  500

seq1  TTTGAAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGA  550

seq1  AAATGGAAAGTAAGAATTCTTCGATATTGAAGTTCATTTACTTATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAAGTAAGAATTCTTCGATATTGAAGTTCATTTACTTATAAATT  600

seq1  TTGTATTTATTTATCCATTGGGGAGAAAAACACCAATGCTATAATATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTATTTATCCATTGGGGAGAAAAACACCAATGCTATAATATGCC  650

seq1  TGTGTAGTTCAGAGAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTTCAGAGAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTT  700

seq1  TGTGGGTTTGGGGATAGAACTCAGATCATCATCTCTGGTAGCAAACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTGGGGATAGAACTCAGATCATCATCTCTGGTAGCAAACACCA  750

seq1  TCTAAGATGTTGTTATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATGTTGTTATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAAC  800

seq1  AGTGGTGTCTTAAATGAATTTTCAACAGCAAGTATTCAAGGGGTTTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTCTTAAATGAATTTTCAACAGCAAGTATTCAAGGGGTTTAACT  850

seq1  GAGGGGACTTAATTTAGTTTTCCTAAATTAAGAGACCTTGTCCTTATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACTTAATTTAGTTTTCCTAAATTAAGAGACCTTGTCCTTATGTC  900

seq1  CCTAAACTTCTCAAATTCGTTCTAAACTAGATATAAATATGAGGAAATGG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTAAACTTCTCAAATTCGTTCTAAACTAGATAT-AATATGAGGAAATGG  949

seq1  T-GAGGAAATACAATACATTATTGTCCCCAGTAAGTCTGTGCCTTGAT-C  998
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGAGGAAATACAATACATTATTGTCCCCAGTAAGTCTGTGCCTTGATCC  999

seq1  ACAATATGTGCAGATTGGTAAATGCTGAAGTTCAGTCTTTCTGCAATGGT  1048
      |||||||||||||| |||||||||||| ||||||||||||||||||| ||
seq2  ACAATATGTGCAGA-TGGTAAATGCTG-AGTTCAGTCTTTCTGCAAT-GT  1046

seq1  CATCTGCATCTTTTCTTGTTTTCTGTTCCTTCTATTAT-AATAAA-GTTA  1096
      ||||||||||||||| |||||   |||||||||||||| |||||| || |
seq2  CATCTGCATCTTTTC-TGTTTCTGGTTCCTTCTATTATAAATAAAGGTAA  1095

seq1  ATGG-ATTTACCT--AATCCAGAAATTTAAT  1124
      |||| || || ||  ||||||||||||||||
seq2  ATGGAATCTAACTTAAATCCAGAAATTTAAT  1126


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