BAC Information

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BAC

Clone NameB6Ng01-178K23
Chromosome1 (Build37)
Map Location 96,033,061 - 96,034,175
singlet/doubletsinglet
Overlap genenone
Upstream geneAgxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1
Downstream geneLOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K23.bB6Ng01-178K23.g
ACCGA005601GA005602
length1,1221,176
definitionB6Ng01-178K23.b B6Ng01-178K23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaggttttatttatatatatttgtgcatgtacatatatatat
atatatagagagagagagttatatgtatgtaacaatgatccaagaattag
aagctatcagctcaagagttggggtgcaagggggttcaaagcatagctga
gaggggctggagggaggaaagatggagggtaagtgatattttatttcaat
taaaacatattcagaaagtattactgagtttagtatgctgtgggatttat
actgtttccagaatttggcactttgtatacagcatttgcagtgcatatct
cataagccagcgactttgttttcttgaaaccggagaacaatttttttaga
gtttaaaagaaaatcttcaggacaggcgagctgtatctcggtagctgcct
ggccaagaatggaacaaagaagcagagaaagccatattgtttgagttaag
cctgcatggaggccggccatatggcggtaggcagccacatggcaggaaga
caaagcaaggaaacccagagctcttgaaaatgcaaacttaggttcaggac
agcacccaagagagagacaaagaaaagaaaaaggaaatattgcacccgaa
aggtaaaggtaggcagagtcaacagaagttcatcatggcgtccagggact
gtgaggtgtgtctttatgagactataccgatcagaggtgcagctcagcat
ttggctaatatgtgcaaatctgtgggtttagtttataccatcaccaaatc
ccaaatcaaaactgaaaccaaagaaaagccagagaagtacaatgattgtt
tttgtgggaacactgttgttttttcttttgtatcaagtgtcagaggcatg
tatattaactaccactagcaaaggataaattaggaagataataaaaatga
taaaagcagtcatcatagctgtgtacatctctctctaagctggcatacta
tttgaatatgattcagttccttgtgatgtcttcatacatgtaccgtgatt
atatctctttcctaggacacttctgtttcttgtctcgaatcttgctcaac
ttccaagcaaatacccaatgtcctttcctgtcttttgctgtaaattctag
gattcactcatatgaaaaggat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaaaaggaacactcctccattgttggtg
ggattgcagacttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatcctgaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgagaagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaaaattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctaccaaac
atagaagtggatgctcacagtcagctaaaggatggttcacaaggctccca
atggagagctagagaaagtagccaagagctaaagggatctgcaaccctat
agtgaacaacattatgaactaacccagtaccccgagctctgacttagctg
catattgtatcaataagatgctagttcgccattcaactgaaaagagaagc
catgaacatcgcaaactttaatgcctagtacaaggcatcgtcaggtcaaa
gggaaatgtggtgttgctgtgctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96033061_96034175
seq2: B6Ng01-178K23.b_43_1164

seq1  GAATTCTTCAGGTTTTATTTATATATATTTGTGCATGTACATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGTTTTATTTATATATATTTGTGCATGTACATATATATAT  50

seq1  ATATATAGAGAGAGAGAGTTATATGTATGTAACAATGATCCAAGAATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGAGAGAGAGAGTTATATGTATGTAACAATGATCCAAGAATTAG  100

seq1  AAGCTATCAGCTCAAGAGTTGGGGTGCAAGGGGGTTCAAAGCATAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCAGCTCAAGAGTTGGGGTGCAAGGGGGTTCAAAGCATAGCTGA  150

seq1  GAGGGGCTGGAGGGAGGAAAGATGGAGGGTAAGTGATATTTTATTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGGAGGGAGGAAAGATGGAGGGTAAGTGATATTTTATTTCAAT  200

seq1  TAAAACATATTCAGAAAGTATTACTGAGTTTAGTATGCTGTGGGATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATATTCAGAAAGTATTACTGAGTTTAGTATGCTGTGGGATTTAT  250

seq1  ACTGTTTCCAGAATTTGGCACTTTGTATACAGCATTTGCAGTGCATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCCAGAATTTGGCACTTTGTATACAGCATTTGCAGTGCATATCT  300

seq1  CATAAGCCAGCGACTTTGTTTTCTTGAAACCGGAGAACAATTTTTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCAGCGACTTTGTTTTCTTGAAACCGGAGAACAATTTTTTTAGA  350

seq1  GTTTAAAAGAAAATCTTCAGGACAGGCGAGCTGTATCTCGGTAGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAGAAAATCTTCAGGACAGGCGAGCTGTATCTCGGTAGCTGCCT  400

seq1  GGCCAAGAATGGAACAAAGAAGCAGAGAAAGCCATATTGTTTGAGTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAATGGAACAAAGAAGCAGAGAAAGCCATATTGTTTGAGTTAAG  450

seq1  CCTGCATGGAGGCCGGCCATATGGCGGTAGGCAGCCACATGGCAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGGAGGCCGGCCATATGGCGGTAGGCAGCCACATGGCAGGAAGA  500

seq1  CAAAGCAAGGAAACCCAGAGCTCTTGAAAATGCAAACTTAGGTTCAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAGGAAACCCAGAGCTCTTGAAAATGCAAACTTAGGTTCAGGAC  550

seq1  AGCACCCAAGAGAGAGACAAAGAAAAGAAAAAGGAAATATTGCACCCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAGAGAGAGACAAAGAAAAGAAAAAGGAAATATTGCACCCGAA  600

seq1  AGGTAAAGGTAGGCAGAGTCAACAGAAGTTCATCATGGCGTCCAGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGGTAGGCAGAGTCAACAGAAGTTCATCATGGCGTCCAGGGACT  650

seq1  GTGAGGTGTGTCTTTATGAGACTATACCGATCAGAGGTGCAGCTCAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGTGTCTTTATGAGACTATACCGATCAGAGGTGCAGCTCAGCAT  700

seq1  TTGGCTAATATGTGCAAATCTGTGGGTTTAGTTTATACCATCACCAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAATATGTGCAAATCTGTGGGTTTAGTTTATACCATCACCAAATC  750

seq1  CCAAATCAAAACTGAAACCAAAGAAAAGCCAGAGAAGTACAATGATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAAAACTGAAACCAAAGAAAAGCCAGAGAAGTACAATGATTGTT  800

seq1  TTTGTGGGAACACTGTTGTTTTTTCTTTTGTATCAAGTGTCAGAGGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGAACACTGTTGTTTTTTCTTTTGTATCAAGTGTCAGAGGCATG  850

seq1  TATATTAACTACCACTAGCAAA-GATAAATTAGGAAGATAATAAAAATGA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATATTAACTACCACTAGCAAAGGATAAATTAGGAAGATAATAAAAATGA  900

seq1  TAAAAGCAGTCATCATAGCTGTGTACATCTCTCTCTAAGCTGGCATACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAGTCATCATAGCTGTGTACATCTCTCTCTAAGCTGGCATACTA  950

seq1  TTTGAATATGATTCAGTTTCCTTGTGATGTCTTCATACATGTACCGTGAT  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGAATATGATTCAG-TTCCTTGTGATGTCTTCATACATGTACCGTGAT  999

seq1  TATATTCTCTTTCCTA-GACAC-TCTTGTTCCTGTCTCAGATCTTGCTC-  1046
      |||| ||||||||||| ||||| |||  ||| ||||||  ||||||||| 
seq2  TATA-TCTCTTTCCTAGGACACTTCTGTTTCTTGTCTCGAATCTTGCTCA  1048

seq1  ACTTCCAAAGCAATACCCATTGTCCTTTCCTGTC--TTGCTGTAAAATCT  1094
      ||||||||   |||||||| ||||||||||||||  |||||||||| |||
seq2  ACTTCCAAGCAAATACCCAATGTCCTTTCCTGTCTTTTGCTGTAAATTCT  1098

seq1  A-GATTC-TACATATG-AAAGGAT  1115
      | |||||   |||||| |||||||
seq2  AGGATTCACTCATATGAAAAGGAT  1122