BAC Information

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BAC

Clone NameB6Ng01-178L09
Chromosome1 (Build37)
Map Location 71,632,191 - 71,780,140
singlet/doubletdoublet
Overlap geneFn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178L09.bB6Ng01-178L09.g
ACCGA005621GA005622
length1,015754
definitionB6Ng01-178L09.b B6Ng01-178L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,779,130 - 71,780,140)(71,632,191 - 71,632,944)
sequence
gaattcttgcctagtaagcacaagtccctgtgttcagtccccagcacagg
aagaataaaaattaaaataaaaaagcaaaactatatcatagagatttttc
ttctcccattctcagatccccacggtcttgagaataaaacacgaaattgc
ctaaaacctttcagaactgccagatggatgcggagcatggcatggctggc
tttatgacaaggctgtcatgtgacttctgagtaaagtctggggaccctga
cacgatgggatcaaagtcaggaaagcagaaagtcgctttcacgaaaagga
ctaaaagtcagctcgagtcacacgtgcaaagctgagctatttttcatgag
tagcctggaggttttattgactttcaaaatattcatgcttctgatttttc
aaagtctgcttatcatgggatgcttcgattttgatatcatatccaggaat
gggcagaaaggggtactttgtcactgaccacaggacatgagcaaataaat
ttttagagtaatttaaaaggaaggggaactcagtgagagtcattttcttg
aatcctcaccttcttcaaacctgatgaaagggcactgggatggcagaata
gaccggagaactcgaaacagatcagactgcgatttatattcaacttcatt
gtttcttcagatcaaagtgggccatgggtacgtgggcactatggaaaagc
agagaagccaaaaataaagctgaaatacaattttgtcttacatttgattt
gggtgaggtacttactcaataataagcaaggtttcaagatgatcaaaatg
taatatgggaaggggaggcatatggttggaagatatgtattcggaattgg
gcaggagaactaagagtttccagcttcctcaccactggctatatagcaaa
ggaataacttgatgctgttaagtctaatttttcttgagttaataaacagg
gcttgtgctatctcgttggttggatccaagcaaactggggttattcgcta
gggtagagtgtgtgt
gaattcctcttatcaactgcatacaaagtgtcttcaatacaattttttcc
gtataaaaatactgggaaaaattgataaataacaaacaggtaagagaaag
gtatttctaggcaatctgaattgttgggacaaagtgagtcctgtgggagg
ggtgtttgaacacacagccacaggccatgtcctgacagtgctgcaggtca
gatggcaaaagaaagcagaggtgtctgggtgactttcctgctcaaggtct
tgggtactagcattcagtacatttcctcctagttggctacctgtgtttcc
ctattgatcccagaccaaaccataagaacttttgattctcttaaacaaca
ctgagcagtactgaaaccctgaagcagaacagggtgaccaactgtcacca
ttgaggagagaagtctcaaaacatcccacggggcgatgcttggagaagct
gtaaattgtgctgaagctgagaacatggctccagagcaaaaggcttaagg
gtgaaaggaccactcaaagatggagggtctgctaacatcactggggtgtg
gattgaccttggtagagagacacttgtagggtggggctggaaagattact
ctcgagaatcgtctctgtcagcttgcacatctagcggcatgaagcactca
atggggcaatttacgttctgtcaaaatagaagacaaacattagtagcaaa
tactcggaaaaccaaaagtgtgtgtgtttcggggagggttgagtggagat
ttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71779130_71780140
seq2: B6Ng01-178L09.b_43_1057 (reverse)

seq1  ACACACACTCTA-CCTAGCGAATAACCCCAGTTTGCTTGGATCCAA-CAA  48
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  ACACACACTCTACCCTAGCGAATAACCCCAGTTTGCTTGGATCCAACCAA  50

seq1  CGAGATAGCACAAGCCCTGTTTA-TAACTCAAG-AAAATTAGACTTAACA  96
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CGAGATAGCACAAGCCCTGTTTATTAACTCAAGAAAAATTAGACTTAACA  100

seq1  GCATCAAGTAATTCC-TTGCTATATAGCCAGTGGTGAGGAAGCTGGAAAC  145
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  GCATCAAGTTATTCCTTTGCTATATAGCCAGTGGTGAGGAAGCTGGAAAC  150

seq1  TCTTAGTTCTCCTGCCCAATTCCGAATACATATCTTCCAACCATATGCCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTCTCCTGCCCAATTCCGAATACATATCTTCCAACCATATGCCT  200

seq1  CCCCTTCCCATATTACATTTTGATCATCTTTGAAACCTTGCTTATTATTG  245
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTTCCCATATTACATTTTGATCATC-TTGAAACCTTGCTTATTATTG  249

seq1  AGTAAGTACCTCACCCAAATCAAATGTAAGACAAAATTGTATTTCAGCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTACCTCACCCAAATCAAATGTAAGACAAAATTGTATTTCAGCTT  299

seq1  TATTTTTGGCTTCTCTGCTTTTCCATAGTGCCCACGTACCCATGGCCCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGGCTTCTCTGCTTTTCCATAGTGCCCACGTACCCATGGCCCAC  349

seq1  TTTGATCTGAAGAAACAATGAAGTTGAATATAAATCGCAGTCTGATCTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTGAAGAAACAATGAAGTTGAATATAAATCGCAGTCTGATCTGT  399

seq1  TTCGAGTTCTCCGGTCTATTCTGCCATCCCAGTGCCCTTTCATCAGGTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTTCTCCGGTCTATTCTGCCATCCCAGTGCCCTTTCATCAGGTTT  449

seq1  GAAGAAGGTGAGGATTCAAGAAAATGACTCTCACTGAGTTCCCCTTCCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTGAGGATTCAAGAAAATGACTCTCACTGAGTTCCCCTTCCTT  499

seq1  TTAAATTACTCTAAAAATTTATTTGCTCATGTCCTGTGGTCAGTGACAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACTCTAAAAATTTATTTGCTCATGTCCTGTGGTCAGTGACAAA  549

seq1  GTACCCCTTTCTGCCCATTCCTGGATATGATATCAAAATCGAAGCATCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCTTTCTGCCCATTCCTGGATATGATATCAAAATCGAAGCATCCC  599

seq1  ATGATAAGCAGACTTTGAAAAATCAGAAGCATGAATATTTTGAAAGTCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGCAGACTTTGAAAAATCAGAAGCATGAATATTTTGAAAGTCAA  649

seq1  TAAAACCTCCAGGCTACTCATGAAAAATAGCTCAGCTTTGCACGTGTGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCCAGGCTACTCATGAAAAATAGCTCAGCTTTGCACGTGTGAC  699

seq1  TCGAGCTGACTTTTAGTCCTTTTCGTGAAAGCGACTTTCTGCTTTCCTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTGACTTTTAGTCCTTTTCGTGAAAGCGACTTTCTGCTTTCCTGA  749

seq1  CTTTGATCCCATCGTGTCAGGGTCCCCAGACTTTACTCAGAAGTCACATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCCCATCGTGTCAGGGTCCCCAGACTTTACTCAGAAGTCACATG  799

seq1  ACAGCCTTGTCATAAAGCCAGCCATGCCATGCTCCGCATCCATCTGGCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTGTCATAAAGCCAGCCATGCCATGCTCCGCATCCATCTGGCAG  849

seq1  TTCTGAAAGGTTTTAGGCAATTTCGTGTTTTATTCTCAAGACCGTGGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGGTTTTAGGCAATTTCGTGTTTTATTCTCAAGACCGTGGGGA  899

seq1  TCTGAGAATGGGAGAAGAAAAATCTCTATGATATAGTTTTGCTTTTTTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATGGGAGAAGAAAAATCTCTATGATATAGTTTTGCTTTTTTAT  949

seq1  TTTAATTTTTATTCTTCCTGTGCTGGGGACTGAACACAGGGACTTGTGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTATTCTTCCTGTGCTGGGGACTGAACACAGGGACTTGTGCT  999

seq1  TACTAGGCAAGAATTC  1011
      ||||||||||||||||
seq2  TACTAGGCAAGAATTC  1015

seq1: chr1_71632191_71632944
seq2: B6Ng01-178L09.g_66_819

seq1  GAATTCCTCTTATCAACTGCATACAAAGTGTCTTCAATACAATTTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTATCAACTGCATACAAAGTGTCTTCAATACAATTTTTTCC  50

seq1  GTATAAAAATACTGGGAAAAATTGATAAATAACAAACAGGTAAGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAATACTGGGAAAAATTGATAAATAACAAACAGGTAAGAGAAAG  100

seq1  GTATTTCTAGGCAATCTGAATTGTTGGGACAAAGTGAGTCCTGTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTAGGCAATCTGAATTGTTGGGACAAAGTGAGTCCTGTGGGAGG  150

seq1  GGTGTTTGAACACACAGCCACAGGCCATGTCCTGACAGTGCTGCAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGAACACACAGCCACAGGCCATGTCCTGACAGTGCTGCAGGTCA  200

seq1  GATGGCAAAAGAAAGCAGAGGTGTCTGGGTGACTTTCCTGCTCAAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAAAGAAAGCAGAGGTGTCTGGGTGACTTTCCTGCTCAAGGTCT  250

seq1  TGGGTACTAGCATTCAGTACATTTCCTCCTAGTTGGCTACCTGTGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTAGCATTCAGTACATTTCCTCCTAGTTGGCTACCTGTGTTTCC  300

seq1  CTATTGATCCCAGACCAAACCATAAGAACTTTTGATTCTCTTAAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATCCCAGACCAAACCATAAGAACTTTTGATTCTCTTAAACAACA  350

seq1  CTGAGCAGTACTGAAACCCTGAAGCAGAACAGGGTGACCAACTGTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGTACTGAAACCCTGAAGCAGAACAGGGTGACCAACTGTCACCA  400

seq1  TTGAGGAGAGAAGTCTCAAAACATCCCACGGGGCGATGCTTGGAGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGAGAAGTCTCAAAACATCCCACGGGGCGATGCTTGGAGAAGCT  450

seq1  GTAAATTGTGCTGAAGCTGAGAACATGGCTCCAGAGCAAAAGGCTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTGCTGAAGCTGAGAACATGGCTCCAGAGCAAAAGGCTTAAGG  500

seq1  GTGAAAGGACCACTCAAAGATGGAGGGTCTGCTAACATCACTGGGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGACCACTCAAAGATGGAGGGTCTGCTAACATCACTGGGGTGTG  550

seq1  GATTGACCTTGGTAGAGAGACACTTGTAGGGTGGGGCTGGAAAGATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCTTGGTAGAGAGACACTTGTAGGGTGGGGCTGGAAAGATTACT  600

seq1  CTCGAGAATCGTCTCTGTCAGCTTGCACATCTAGCGGCATGAAGCACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGAATCGTCTCTGTCAGCTTGCACATCTAGCGGCATGAAGCACTCA  650

seq1  ATGGGGCAATTTACGTTCTGTCAAAATAGAAGACAAACATTAGTAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAATTTACGTTCTGTCAAAATAGAAGACAAACATTAGTAGCAAA  700

seq1  TACTCGGAAAACCAAAAGTGTGTGTGTTTCGGGGAGGGTTGAGTGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGGAAAACCAAAAGTGTGTGTGTTTCGGGGAGGGTTGAGTGGAGAT  750

seq1  TTGT  754
      ||||
seq2  TTGT  754