BAC Information

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BAC

Clone NameB6Ng01-179N19
Chromosome1 (Build37)
Map Location 93,384,006 - 93,518,168
singlet/doubletdoublet
Overlap geneTraf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N19.bB6Ng01-179N19.g
ACCGA006464GA006465
length755190
definitionB6Ng01-179N19.b B6Ng01-179N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,384,006 - 93,384,757)(93,517,972 - 93,518,168)
sequence
gaattctcaactgaagaacagcctccatagtctagactatggcaggtctg
cagggcattcataaaattcatgactgatgggcagggccattcctggacaa
gttggtgtggactgtataaaaaagcaagccgaccaaggcatgaaaagcaa
gccaagaagcagtgtcttctgtggccctgcttcagttctcaaataaccat
tcttaggaagtcttccttggacaaaaagaaacaggtcctacctatctgta
tatgtctgtatacacacatacaaatgtgtaaggcagtccactgaccctgt
gtagtaccgtaatgatgttttcaaacacttggtgagatccagcggtatct
cagtagaagcttcactacaatatcttttgatgttgatgtaaatcttcatt
caaaagtgagtctccttgtaaaaatgtgcccttctttatggagtttgaag
actcaacaggtggactgaatgtcattgctgccatgctctatgtctcaaaa
agttcaactgtaggtctttggctcaactccagcttgagggcctcagagcc
ttcacatggtgcaagcagatgtactgcaaatcttcacacaatgggatggt
aaagtctccaaagtgtgtgtagctcccacagtgcggaattccatgcatta
cattactctggctcctccggcttgggtagaaacaccctgatgccctgaga
ctcctttatcaagcaagagatctgtttttggaaaaatgtctgcatcagta
agttg
ataccacctcgaatcctacaccaagtggcataaagatgatctgagaaaag
ggacaagatcagaggaggtcggcaggaggagagcaagaagtacatggact
tcctgggcgcttctcttcaatactgcatgaaccttaaactgtttgaaaac
aaatctattttttaaatgggggattagtaggaggtggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93384006_93384757
seq2: B6Ng01-179N19.b_44_798

seq1  GAATTCTCAACTGAAGAACAGCCTCCATAGTCTAGACTATGGCAGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAAGAACAGCCTCCATAGTCTAGACTATGGCAGGTCTG  50

seq1  CAGGGCATTCATAGAATTCATGACTGATGGGCAGGGCCATTCCTGGACAA  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATTCATAAAATTCATGACTGATGGGCAGGGCCATTCCTGGACAA  100

seq1  GTTGGTGTGGACTGTATAAAAAAGCAAGCCGACCAAGGCATGAAAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTGGACTGTATAAAAAAGCAAGCCGACCAAGGCATGAAAAGCAA  150

seq1  GCCAAGAAGCAGTGTCTTCTGTGGCCCTGCTTCAGTTCTCAAATAACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAGCAGTGTCTTCTGTGGCCCTGCTTCAGTTCTCAAATAACCAT  200

seq1  TCTTAGGAAGTCTTCCTTGTACAAAAGGAAACAGGTCCTACGTATCTGTA  250
      ||||||||||||||||||| |||||| |||||||||||||| ||||||||
seq2  TCTTAGGAAGTCTTCCTTGGACAAAAAGAAACAGGTCCTACCTATCTGTA  250

seq1  TATGTCTGTATACACACATACAAATGTGTAAGGCAGTCCACTGACCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGTATACACACATACAAATGTGTAAGGCAGTCCACTGACCCTGT  300

seq1  GTAGTACCGTAATGATGTTTTCAAACACTTGGTGAGATCCAGCGGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACCGTAATGATGTTTTCAAACACTTGGTGAGATCCAGCGGTATCT  350

seq1  CAGTAGAAGCTTCACTACAATATCTTTTGATGTTGATGTAAATCTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAGCTTCACTACAATATCTTTTGATGTTGATGTAAATCTTCATT  400

seq1  CAAAAGTGAGTCTCCTTGTAAAAATGTGCCCTTCTTTATGGAGTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGAGTCTCCTTGTAAAAATGTGCCCTTCTTTATGGAGTTTGAAG  450

seq1  ACTCAACAGGTGGACTGAATGTCATTGCTGCCATGCTCTATGTCTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAGGTGGACTGAATGTCATTGCTGCCATGCTCTATGTCTCAAAA  500

seq1  AGTTCAACTGTAGGTCTTTGGCTCAGCTCCAGCTTGAGGGCCTCAGAGCC  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTTCAACTGTAGGTCTTTGGCTCAACTCCAGCTTGAGGGCCTCAGAGCC  550

seq1  TTCAGATGGTGCAAGCAGATGTACTGCAAATCTTCACACAATGGGATGGT  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGTGCAAGCAGATGTACTGCAAATCTTCACACAATGGGATGGT  600

seq1  AAAGTCTCCAAAGTGTGTGTAGCTCCCACAGTGCGGTATTCCATGCATTA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGTCTCCAAAGTGTGTGTAGCTCCCACAGTGCGGAATTCCATGCATTA  650

seq1  CAGTACTCTGGCTCCTCCGGCTTGGGTAGAAACACCCTGCTGCCCTGAGA  700
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATTACTCTGGCTCCTCCGGCTTGGGTAGAAACACCCTGATGCCCTGAGA  700

seq1  CTCC-TTATCAAGCAAGAGATCTG-TTCTGGAAAAA-GTCTGCATCAGTA  747
      |||| ||||||||||||||||||| || |||||||| |||||||||||||
seq2  CTCCTTTATCAAGCAAGAGATCTGTTTTTGGAAAAATGTCTGCATCAGTA  750

seq1  AGCTG  752
      || ||
seq2  AGTTG  755

seq1: chr1_93517972_93518168
seq2: B6Ng01-179N19.g_68_263 (reverse)

seq1  GCCCCACCTCCTACTAATCCCCCATTTAAAAAATAGATTTGTTTTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTCCTACTAATCCCCCATTTAAAAAATAGATTTGTTTTCAAAC  50

seq1  AGTTTAAGGTTCATGCAGTACTGAAGAGAAGCGCCCAGGAAGTCCATGTA  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTTAAGGTTCATGCAGTATTGAAGAGAAGCGCCCAGGAAGTCCATGTA  100

seq1  CTTCTTGCTCTCCTCCTGCCGACCTCCTCTGGTCTTGTCCCTTTTCTCAG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCTTGCTCTCCTCCTGCCGACCTCCTCTGATCTTGTCCCTTTTCTCAG  150

seq1  ATCATCTTTATGCCACTTGGTGTAGGATTCGAGGTGGTATTGAATTC  197
      ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCATCTTTATGCCACTTGGTGTAGGATTCGAGGTGGTA-TGAATTC  196