BAC Information

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BAC

Clone NameB6Ng01-180C03
Chromosome1 (Build37)
Map Location 28,145,936 - 28,270,517
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180C03.bB6Ng01-180C03.g
ACCGA006653GA006654
length1,1741,119
definitionB6Ng01-180C03.b B6Ng01-180C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,145,936 - 28,146,793)(28,269,420 - 28,270,517)
sequence
gaattcaacatagcgacacactattggcttattcaaacatcagcagaaaa
attacatgtgcgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcctcacattcctctttatctttaaggttaagc
tgttcccaggaatgttttaactatggggcatacccaggtttgtttttctt
ttttctcagccccaggcagcctctaggctcacaaacaaccagcaattgtt
tatatatacttatatgagtactttatatgacttacaggtcttgaaatttc
atctttctttcactataatatcctttttcaccctcctcccatccaaatat
acaccctttctgtctctagttggaaaacaggcagctatagaggaacaata
aaataaaataagaacaaacttgaataggacaaaataaacaaacaggaaaa
agggagtcaaaaaatacaagaagcacatagagactcagagccacatattc
aggcacagaaataccataaaatattaagttggaagccataatatacatgg
atgcaatctgtaagtttaaaaacaaaatccctgactagtgttatgagaca
aagaacttccaaagccattattgagttgattttgtattagctatcttgct
ggagatggggctggagagtggtttgtatcccctctgagattcagttgtag
agaactaagttttcatttgaagatacttatacattagagatagctcctgg
gttactgatggaggctttcttcactactcctatcagtactgggatcccat
ctgccactaaccactatagtaattagatggcactaaggaaacaagcccat
cgaatcagagtgggaccaacacacttgaactcagagactggtagcattct
tccaggtttgacacagaatgatcttgaggacactgaaacagagcaggctt
tggtgatgaagtagcatgcaagcctttcaaggttttaggctggctgcagg
aattaccatgttctcccctgtagtttaagaattaccaagatattcctctg
ttaacaatgagaagatagatcatggggcctgttttattggccaagtcaaa
cctaatgtgctcaaatatcagaaatcctcagaaatcaaggcccttgctca
ccgtaaaggcttctctgggtctgt

gaattctctaacgttttggagaaaataatatctacataggcaactgtgtg
aatccaagttcagttaacgatttgggtgtttttgaaattaagtatttagt
gtctttagtatctttagaggtatgttataatgttaatatccaagttagct
gaatggatacctaagtccataaatataaaatttatatgtcatgtgatata
gctaatatggtagtgaaacatgaactgaaatgttgtttcagaactctaat
ttccatgacatcatcagcaagaattctatttatgatatttttttgactga
ggcagggtctcatgtattgtaaactggtttcaaattccttctgtagccaa
agagagagggactcttctaaactgtacaactgtgagttagctggaaaaaa
tgtatgttaatgccttattctgatctaactgttctacatgtgccaatgtt
tgccacaactacttgtataaataattttagaagatcgttagtgatggtct
taatcggtttcctctgtttcataaaaatgaagtctgtttttgttaactac
tctgataactaagaatacaagcacctgcccaagtcataagtatctgcatc
atgtggtccagtcatcagtatctacagcatatggcctagtcgtcagtatg
tagaatatctgacccagtcttcagtatctgtagtacatggccccaatcat
cagtatctccagtacctgacacagtcataggtattgacagttccctgttg
ctgtcatcagtacctacagcacctggcccaatgagcatctgtacgcacct
gacccagtcaatatctgttcagcatttggtaaggattttcttgctgaatt
ttaatatgggtagaagatatcatctgataatgctttgtgagaatttcaat
atccctgtctcctaaagttgtgaatgcagtagtaagaagcttcattcctg
gtgtctgatttaaccggtaatttcttcccacaataacacggcaagggctg
catttcttattttttaacataaggcatttacttcctccagttcaaatggt
catcaaatattcaggtttagattatcatttctaaaaatttccaggaagga
ataatcttttttccttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28145936_28146793
seq2: B6Ng01-180C03.b_347_1217

seq1  TTTCTTTCACTATAATATCCTTTTTCACCCTCCTCCCATCCAAATATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCACTATAATATCCTTTTTCACCCTCCTCCCATCCAAATATACA  50

seq1  CCCTTTCTGTCTCTAGTTGGAAAACAGGCAGCTATAGAGGAACAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGTCTCTAGTTGGAAAACAGGCAGCTATAGAGGAACAATAAAA  100

seq1  TAAAATAAGAACAAACTTGAATAGGACAAAATAAACAAACAGGAAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGAACAAACTTGAATAGGACAAAATAAACAAACAGGAAAAAGG  150

seq1  GAGTCAAAAAATACAAGAAGCACATAGAGACTCAGAGCCACATATTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAAAATACAAGAAGCACATAGAGACTCAGAGCCACATATTCAGG  200

seq1  CACAGAAATACCATAAAATATTAAGTTGGAAGCCATAATATACATGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATACCATAAAATATTAAGTTGGAAGCCATAATATACATGGATG  250

seq1  CAATCTGTAAGTTTAAAAACAAAATCCCTGACTAGTGTTATGAGACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTAAGTTTAAAAACAAAATCCCTGACTAGTGTTATGAGACAAAG  300

seq1  AACTTCCAAAGCCATTATTGAGTTGATTTTGTATTAGCTATCTTGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAAAGCCATTATTGAGTTGATTTTGTATTAGCTATCTTGCTGGA  350

seq1  GATGGGGCTGGAGAGTGGTTTGTATCCCCTCTGAGATTCAGTTGTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCTGGAGAGTGGTTTGTATCCCCTCTGAGATTCAGTTGTAGAGA  400

seq1  ACTAAGTTTTCATTTGAAGATACTTATACATTAGAGATAGCTCCTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTTCATTTGAAGATACTTATACATTAGAGATAGCTCCTGGGTT  450

seq1  ACTGATGGAGGCTTTCTTCACTACTCCTATCAGTACTGGGATCCCATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGAGGCTTTCTTCACTACTCCTATCAGTACTGGGATCCCATCTG  500

seq1  CCACTAACCACTATAGTAATTAGATGGCACTAAGGAAACAAGCCCATCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACCACTATAGTAATTAGATGGCACTAAGGAAACAAGCCCATCGA  550

seq1  ATCAGAGTGGGACCAACACACTTGAACTCAGAGACTGGTAGCATTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTGGGACCAACACACTTGAACTCAGAGACTGGTAGCATTCTTCC  600

seq1  AGGTTTGACACAGAA-GATCTTGAGGACACTGAAACAGAGCAGGCTTTGG  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTTTGACACAGAATGATCTTGAGGACACTGAAACAGAGCAGGCTTTGG  650

seq1  TGATGAAGTAGCATGCAAGCCTT--CAGGGTTTAAGCTGGCTGCAGGAAT  697
      |||||||||||||||||||||||   ||| |||| |||||||||||||||
seq2  TGATGAAGTAGCATGCAAGCCTTTCAAGGTTTTAGGCTGGCTGCAGGAAT  700

seq1  TACCATG-TCTCCCCTGTAGTTTAAGAATTACCAAGATATTCCTCTGTTA  746
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTCTCCCCTGTAGTTTAAGAATTACCAAGATATTCCTCTGTTA  750

seq1  AC-ATGAGAAGAATAGATCAT-GGGCCTGTTTTATGGCACAGGTCAAAC-  793
      || |||||||| ||||||||| ||||||||||||| |  || ||||||| 
seq2  ACAATGAGAAG-ATAGATCATGGGGCCTGTTTTATTGGCCAAGTCAAACC  799

seq1  -TATGTGGCTAAATATCAGAA--CCTCAAGAAATCA--GGCCTTGCACAC  838
        |||||   |||||||||||  |||| ||||||||  | |||||| |||
seq2  TAATGTGCTCAAATATCAGAAATCCTC-AGAAATCAAGGCCCTTGCTCAC  848

seq1  CTTAAAGGC-TCTCT--GTCTGT  858
      | ||||||| |||||  ||||||
seq2  CGTAAAGGCTTCTCTGGGTCTGT  871


seq1: chr1_28269420_28270517
seq2: B6Ng01-180C03.g_62_1180 (reverse)

seq1  GAGAAG---AAAAAATTATTCCT--CTTGTAATTTTTAG-AATGATAATC  44
      ||||||   |||| |||||||||  || | ||||||||| ||||||||||
seq2  GAGAAGGAAAAAAGATTATTCCTTCCTGGAAATTTTTAGAAATGATAATC  50

seq1  TTAACCTGAATA-TTGATGACCATTTGAACTGGA-GAAGTAAATG-CTTA  91
      | |||||||||| ||||||||||||||||||||| |||||||||| ||||
seq2  TAAACCTGAATATTTGATGACCATTTGAACTGGAGGAAGTAAATGCCTTA  100

seq1  TGTTAGAAA--TAGAAATGCAG-CCTTGCCGTGTTATTGT-GGAAGAAA-  136
      ||||| |||   |||||||||| ||||||||||||||||| |||||||| 
seq2  TGTTAAAAAATAAGAAATGCAGCCCTTGCCGTGTTATTGTGGGAAGAAAT  150

seq1  TAACGGTTAAATCAGACA-CAGGGATGAAGCTTC-TACTACTGCATTCAC  184
      || ||||||||||||||| |||| |||||||||| |||||||||||||||
seq2  TACCGGTTAAATCAGACACCAGGAATGAAGCTTCTTACTACTGCATTCAC  200

seq1  AACCTTAGGAGACAGGGATATTGAATTTCTCAC-AAGCATTATCAGATGA  233
      ||| ||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  AACTTTAGGAGACAGGGATATTGAAATTCTCACAAAGCATTATCAGATGA  250

seq1  TATCTTCTA-CCATATTAAAATTCAGCAAGAAAATCCTTACCAAATGCTG  282
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTACCCATATTAAAATTCAGCAAGAAAATCCTTACCAAATGCTG  300

seq1  AACAGATATTGACTGGGTCAGGTGC-TACAGATGCTCATTGGGCCAGGTG  331
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACAGATATTGACTGGGTCAGGTGCGTACAGATGCTCATTGGGCCAGGTG  350

seq1  CTGTAGGTACTGATGACAGCAACAGGG-ACTGTCAATACCTATGACTGTG  380
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTAGGTACTGATGACAGCAACAGGGAACTGTCAATACCTATGACTGTG  400

seq1  TCAGGTACTGGAGATACTGATGATT-GGGCCATGTACTACAGATACTGAA  429
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGTACTGGAGATACTGATGATTGGGGCCATGTACTACAGATACTGAA  450

seq1  GACTGGGTCAGATATTCTACATACTGACGACTAGGCCATATGCTGTAGAT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTCAGATATTCTACATACTGACGACTAGGCCATATGCTGTAGAT  500

seq1  ACTGATGACTGGACCACATGATGCAGATACTTATGACTTGGGCAGGTGCT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGACTGGACCACATGATGCAGATACTTATGACTTGGGCAGGTGCT  550

seq1  TGTATTCTTAGTTATCAGAGTAGTTAACAAAAACAGACTTCATTTTTATG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTAGTTATCAGAGTAGTTAACAAAAACAGACTTCATTTTTATG  600

seq1  AAACAGAGGAAACCGATTAAGACCATCACTAACGATCTTCTAAAATTATT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGAAACCGATTAAGACCATCACTAACGATCTTCTAAAATTATT  650

seq1  TATACAAGTAGTTGTGGCAAACATTGGCACATGTAGAACAGTTAGATCAG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGTAGTTGTGGCAAACATTGGCACATGTAGAACAGTTAGATCAG  700

seq1  AATAAGGCATTAACATACATTTTTTCCAGCTAACTCACAGTTGTACAGTT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCATTAACATACATTTTTTCCAGCTAACTCACAGTTGTACAGTT  750

seq1  TAGAAGAGTCCCTCTCTCTTTGGCTACAGAAGGAATTTGAAACCAGTTTA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGTCCCTCTCTCTTTGGCTACAGAAGGAATTTGAAACCAGTTTA  800

seq1  CAATACATGAGACCCTGCCTCAGTCAAAAAAATATCATAAATAGAATTCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATGAGACCCTGCCTCAGTCAAAAAAATATCATAAATAGAATTCT  850

seq1  TGCTGATGATGTCATGGAAATTAGAGTTCTGAAACAACATTTCAGTTCAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGATGTCATGGAAATTAGAGTTCTGAAACAACATTTCAGTTCAT  900

seq1  GTTTCACTACCATATTAGCTATATCACATGACATATAAATTTTATATTTA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTACCATATTAGCTATATCACATGACATATAAATTTTATATTTA  950

seq1  TGGACTTAGGTATCCATTCAGCTAACTTGGATATTAACATTATAACATAC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTAGGTATCCATTCAGCTAACTTGGATATTAACATTATAACATAC  1000

seq1  CTCTAAAGATACTAAAGACACTAAATACTTAATTTCAAAAACACCCAAAT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGATACTAAAGACACTAAATACTTAATTTCAAAAACACCCAAAT  1050

seq1  CGTTAACTGAACTTGGATTCACACAGTTGCCTATGTAGATATTATTTTCT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAACTGAACTTGGATTCACACAGTTGCCTATGTAGATATTATTTTCT  1100

seq1  CCAAAACGTTAGAGAATTC  1098
      |||||||||||||||||||
seq2  CCAAAACGTTAGAGAATTC  1119


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