BAC Information

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BAC

Clone NameB6Ng01-180E12
Chromosome1 (Build37)
Map Location 98,358,076 - 98,465,917
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E12.bB6Ng01-180E12.g
ACCGA006763GA006764
length1,1401,134
definitionB6Ng01-180E12.b B6Ng01-180E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,464,766 - 98,465,917)(98,358,076 - 98,359,203)
sequence
gaattccaggctagccagtatacagtgaggtaacctatactaagtctacc
cagcattaccaaggaaacatatttctcttggtctgatttctggctatttt
tccttgtatccagccaacctctctctttctctctcctctttttttccctc
tcctcactctccctccttcccagttaacaattttaatgatttgcacattt
gtactgtgtccattgtaaagtgaaacaaaaataataatatgttcgatagt
atttttgagtaagtaatagccactagtcaattctaaaggaattccaaatg
aaatttgggcagtgaataaaccacaagtaagagatggtggcacatgctaa
tattcctagcaattagaaactgaagttggaagagtgaagttccttctctg
gctgacctaaaggtcataagtagcaaaatctttctaaagtccattctgta
taaagaagtgttttttggtgtgtgtttgcatgtgtgttaaaaggaaatct
aaatctaccggaagccatcaggagtatggaagagacatagttccatattg
ccaccaataactctgagttgttttcaggggcagtatactcaggtgctgtt
aggatccttgacttgaaggcagaaacacattttaggataaaacagtatta
gccagagttggaatatatcatgttattctataatcatgaatattaataga
aagaaaggtgcatcagagaagacatactaagaatactgcacacctaagaa
agggtgtaggcttaagagacagtaataattatgtgtcttatctataacca
cacatatatggttttgatgactcttgcactatagtttaaagaaatgcaag
aaaacccatttttcccctttaggcaaaaatgattatagtgtagacttcag
gagaaagtttaaaagccttgcaatctgataaggtaaaactctggataaca
aaggttacacaaggtaggtaaggcctgtcttgtactggaaatgggcatgg
gagtgtgagattccaacacatttttagtttacatctggacagaagaaagt
ccgtaataaaatcatatcttctagactaaagaatgattcaatgtgattaa
ttattctatcaaaacatgttatattatagcatttgtctca

gaattccttactggctacctaaaatttggatgcaaaagtaaatagctatg
tgtgtaacattttaatataaatatataatttaaaattttcttctgttttc
tactaagttataggataaaatcttccacaacatgtgaagtaaaattgaaa
atggacctacatttttctaccagatcataatctatgatataataatgggg
attgagtaattatcctttcagcttaattatatctctcttcactatgctat
tgaattcatttcctgaatttaattcaccattacttgcccaacttattgca
atcttgtcatttccatccgcagtgtgttctctgaaacagaataaatctgt
ttagaaggatgtattataattttcaattgtcatagttccattcatttatt
ctacatatccaacaggcattgccttctatattttgacagcttcagttcca
ctgaaatattcataatgttcccagcctcaagcagtatattctttagaagc
ttctgtaaatccagaatgcatcaagaggataaggcatttcaagttatttc
aactactttgcattgaacaaaaaacaccgtttatcaaattaaagggaggc
tgtcagaggcaaaatagagcaatggggttctctgaagaaaaaaataacta
atatttcatctatagaataacattttatgaagcttttattcttatatttt
tcaagaaggcaatgaaatatagctatttttgaagtccacgagaactatat
taaccttctaatttacttaatttcttgtaaaataaattcatcttggctct
tttgattgtattttatttgatatgttgggcatttttgatgcttaaggcat
ggaaggtagacagcacatttctcagcacaaatgcagtcaataaaaaaatc
agttaattcaaatcatatgtctttttccacattccaaggacataattcat
ttttattgctgtttttggaagtcatctgagcatcgttctatttataagaa
catgttgtcttttataaaatgtaaaatgccatttattatcaagtaaatat
tctctttagtataatagttgaaatttttacagtattctcaaataacaagt
aattcttgtcttcaagtccatggcctactctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98464766_98465917
seq2: B6Ng01-180E12.b_42_1181 (reverse)

seq1  TGAGACAAATGCCTTATATATAACCATGTTTTGAATAAGAATAATAAAAT  50
      ||||||||||||  || |||||| ||||||||||   ||||||||  |||
seq2  TGAGACAAATGCTATA-ATATAA-CATGTTTTGA--TAGAATAAT-TAAT  45

seq1  CACAATGAATCATTCTTTAAGTCTTAAGAAGATATGATTTTTAATTACGG  100
      |||| ||||||||||||| |||||  |||||||||||||||  |||||||
seq2  CACATTGAATCATTCTTT-AGTCT--AGAAGATATGATTTT--ATTACGG  90

seq1  ACTTTCTTCTGTCCCAGATGTAAACCTAAAATGTTGTTGGAATCTCACCA  150
      |||||||||||| ||||||||||||  |||||| ||||||||||||| ||
seq2  ACTTTCTTCTGT-CCAGATGTAAACTAAAAATG-TGTTGGAATCTCA-CA  137

seq1  CTCCCATGCCCATTTCCAGTACAAGACAGGCCTTACCTACCTTGTGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGCCCATTTCCAGTACAAGACAGGCCTTACCTACCTTGTGTAAC  187

seq1  CTTTGTTATCCAGAGTTTTACCTTATCAGATTGCAAGGCTTTTAAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATCCAGAGTTTTACCTTATCAGATTGCAAGGCTTTTAAACTTT  237

seq1  CTCCTGAAGTCTACACTATAATCATTTTTGCCTAAAGGGGAAAAATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGTCTACACTATAATCATTTTTGCCTAAAGGGGAAAAATGGGT  287

seq1  TTTCTTGCATTTCTTTAAACTATAGTGCAAGAGTCATCAAAACCATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCATTTCTTTAAACTATAGTGCAAGAGTCATCAAAACCATATAT  337

seq1  GTGTGGTTATAGATAAGACACATAATTATTACTGTCTCTTAAGCCTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTATAGATAAGACACATAATTATTACTGTCTCTTAAGCCTACAC  387

seq1  CCTTTCTTAGGTGTGCAGTATTCTTAGTAT-TCTTCTCTGATGCACCTTT  449
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTCTTAGGTGTGCAGTATTCTTAGTATGTCTTCTCTGATGCACCTTT  437

seq1  CTTTCTATTAATATTCATGATTATAGAATAACATGATATATTCCAACTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTAATATTCATGATTATAGAATAACATGATATATTCCAACTCT  487

seq1  GGCTAATACTGTTTTATCCTAAAATGTGTTTCTGCCTTCAAGTCAAGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATACTGTTTTATCCTAAAATGTGTTTCTGCCTTCAAGTCAAGGAT  537

seq1  CCTAACAGCACCTGAGTATACTGCCCCTGAAAACAACTCAGAGTTATTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGCACCTGAGTATACTGCCCCTGAAAACAACTCAGAGTTATTGG  587

seq1  TGGCAATATGGAACTATGTCTCTTCCATACTCCTGATGGCTTCCGGTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATATGGAACTATGTCTCTTCCATACTCCTGATGGCTTCCGGTAGA  637

seq1  TTTAGATTTCCTTTTAACACACATGCAAACACACACCAAAAAACACTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTCCTTTTAACACACATGCAAACACACACCAAAAAACACTTCT  687

seq1  TTATACAGAATGGACTTTAGAAAGATTTTGCTACTTATGACCTTTAGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGAATGGACTTTAGAAAGATTTTGCTACTTATGACCTTTAGGTC  737

seq1  AGCCAGAGAAGGAACTTCACTCTTCCAACTTCAGTTTCTAATTGCTAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGAAGGAACTTCACTCTTCCAACTTCAGTTTCTAATTGCTAGGA  787

seq1  ATATTAGCATGTGCCACCATCTCTTACTTGTGGTTTATTCACTGCCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCATGTGCCACCATCTCTTACTTGTGGTTTATTCACTGCCCAAA  837

seq1  TTTCATTTGGAATTCCTTTAGAATTGACTAGTGGCTATTACTTACTCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGGAATTCCTTTAGAATTGACTAGTGGCTATTACTTACTCAAA  887

seq1  AATACTATCGAACATATTATTATTTTTGTTTCACTTTACAATGGACACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATCGAACATATTATTATTTTTGTTTCACTTTACAATGGACACAG  937

seq1  TACAAATGTGCAAATCATTAAAATTGTTAACTGGGAAGGAGGGAGAGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTGCAAATCATTAAAATTGTTAACTGGGAAGGAGGGAGAGTGA  987

seq1  GGAGAGGGAAAAAAAGAGGAGAGAGAAAGAGAGAGGTTGGCTGGATACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAAAAAAAGAGGAGAGAGAAAGAGAGAGGTTGGCTGGATACAA  1037

seq1  GGAAAAATAGCCAGAAATCAGACCAAGAGAAATATGTTTCCTTGGTAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATAGCCAGAAATCAGACCAAGAGAAATATGTTTCCTTGGTAATG  1087

seq1  CTGGGTAGACTTAGTATAGGTTACCTCACTGTATACTGGCTAGCCTGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGACTTAGTATAGGTTACCTCACTGTATACTGGCTAGCCTGGAA  1137

seq1  TTC  1152
      |||
seq2  TTC  1140


seq1: chr1_98358076_98359203
seq2: B6Ng01-180E12.g_64_1197

seq1  GAATTCCTTACTGGCTACCTAAAATTTGGATGCAAAAGTAAATAGCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACTGGCTACCTAAAATTTGGATGCAAAAGTAAATAGCTATG  50

seq1  TGTGTAACATTTTAATATAAATATATAATTTAAAATTTTCTTCTGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACATTTTAATATAAATATATAATTTAAAATTTTCTTCTGTTTTC  100

seq1  TACTAAGTTATAGGATAAAATCTTCCACAACATGTGAAGTAAAATTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTTATAGGATAAAATCTTCCACAACATGTGAAGTAAAATTGAAA  150

seq1  ATGGACCTACATTTTTCTACCAGATCATAATCTATGATATAATAATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTACATTTTTCTACCAGATCATAATCTATGATATAATAATGGGG  200

seq1  ATTGAGTAATTATCCTTTCAGCTTAATTATATCTCTCTTCACTATGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAATTATCCTTTCAGCTTAATTATATCTCTCTTCACTATGCTAT  250

seq1  TGAATTCATTTCCTGAATTTAATTCACCATTACTTGCCCAACTTATTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATTTCCTGAATTTAATTCACCATTACTTGCCCAACTTATTGCA  300

seq1  ATCTTGTCATTTCCATCCGCAGTGTGTTCTCTGAAACAGAATAAATCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCATTTCCATCCGCAGTGTGTTCTCTGAAACAGAATAAATCTGT  350

seq1  TTAGAAGGATGTATTATAATTTTCAATTGTCATAGTTCCATTCATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGATGTATTATAATTTTCAATTGTCATAGTTCCATTCATTTATT  400

seq1  CTACATATCCAACAGGCATTGCCTTCTATATTTTGACAGCTTCAGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATCCAACAGGCATTGCCTTCTATATTTTGACAGCTTCAGTTCCA  450

seq1  CTGAAATATTCATAATGTTCCCAGCCTCAAGCAGTATATTCTTTAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATTCATAATGTTCCCAGCCTCAAGCAGTATATTCTTTAGAAGC  500

seq1  TTCTGTAAATCCAGAATGCATCAAGAGGATAAGGCATTTCAAGTTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAATCCAGAATGCATCAAGAGGATAAGGCATTTCAAGTTATTTC  550

seq1  AACTACTTTGCATTGAACAAAAAACACCGTTTATCAAATTAAAGGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTGCATTGAACAAAAAACACCGTTTATCAAATTAAAGGGAGGC  600

seq1  TGTCAGAGGCAAAATAGAGCAATGGGGTTCTCTGAAGAAAAAAATAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGCAAAATAGAGCAATGGGGTTCTCTGAAGAAAAAAATAACTA  650

seq1  ATATTTCATCTATAGAATAACATTTTATGAAGCTTTTATTCTTATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATCTATAGAATAACATTTTATGAAGCTTTTATTCTTATATTTT  700

seq1  TCAAGAAGGCAATGAAATATAGCTATTTTTGAAGTCCACGAGAACTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGGCAATGAAATATAGCTATTTTTGAAGTCCACGAGAACTATAT  750

seq1  TAACCTTCTAATTTACTTAATTTCTTGTAAAATAAATTCATCTTGGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCTAATTTACTTAATTTCTTGTAAAATAAATTCATCTTGGCTCT  800

seq1  TTTGATTGTATTTTATTTGATATGTTGGGCATTTTTGATGCTTAAGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGTATTTTATTTGATATGTTGGGCATTTTTGATGCTTAAGGCAT  850

seq1  GGAAGGTAGACAGCACATTTCTCAGCACAAATGCAGTCAATAAAAAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAGACAGCACATTTCTCAGCACAAATGCAGTCAATAAAAAAATC  900

seq1  AGTTAATTCAAATCATATGTCTTTTTCCACATTCCAAGGACATAATTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTCAAATCATATGTCTTTTTCCACATTCCAAGGACATAATTCAT  950

seq1  TTTTATTGCTGTTTTTGGAAGTCATCTGAGCATCGTTCTATTTATAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCTGTTTTTGGAAGTCATCTGAGCATCGTTCTATTTATAAGAA  1000

seq1  CATG-TGTCTTTATAAAAATGTAAAATGCCATTTA-TATCAAGTAAATAT  1048
      |||| |||||||   |||||||||||||||||||| ||||||||||||||
seq2  CATGTTGTCTTTTATAAAATGTAAAATGCCATTTATTATCAAGTAAATAT  1050

seq1  TCTCTTTAGTATATAAGTTGAAA-TTTTACAGTATTCTCAAATAACAAGT  1097
      |||||||||||||  |||||||| ||||||||||||||||||||||||||
seq2  TCTCTTTAGTATAATAGTTGAAATTTTTACAGTATTCTCAAATAACAAGT  1100

seq1  AATTC-TGTC-TCAAGTCCATGG-CTACTCTAGA  1128
      ||||| |||| |||||||||||| ||||||||||
seq2  AATTCTTGTCTTCAAGTCCATGGCCTACTCTAGA  1134


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