BAC Information

Click to search

BAC

Clone NameB6Ng01-181F08
Chromosome1 (Build37)
Map Location 197,011,092 - 197,012,231
singlet/doubletsinglet
Overlap geneEG635956
Upstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2
Downstream geneLOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181F08.bB6Ng01-181F08.g
ACCGA007520GA007521
length8651,137
definitionB6Ng01-181F08.b B6Ng01-181F08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttctttttttttttttttttcc
attttttattaggtatttaactcatttacatttccaatgctataccaaaa
gtcccccatatccacccacccccactcccctgcccacccactcccccttt
ttggccctggtattcccctgtactggggcatataaagtttgcaagtccaa
tgggcctctctttccagtgatggccgactaggccatcttttgatatatat
gcagctagagtcaagagctccggggtactggttagctcataatgttgttc
cacctatagggttgcagatccctttagctccttggctactttctctagct
cctccattgggagccctatgatccatccattagctgactgtgagcatcca
cttctgtgtttgctgggccccggcatagtctcacaagagacagctacatc
tgcgtcctttcaataaaatcttgctagtgtatgcaatggtgtcagcgttt
ggatgctgattatggggtggatccctggctatggcagtctctacatggtc
catcctttcatctcagctccaaactccgtctctgtaactccttccatggg
tgttttgttcccaaatctaaggaggggcatagtgtccacacttcagtctt
cattctccttgagtttcatgtgtttagcaaattatatcttatatcttggg
tatcctaggtttggggctaatatccacttatcagtgaatacatatgtgtg
tgagtttctttgtgaatgtgttacctcactcaggatgatgccctccaggt
ccatccatatggctaggaatttcataaattcattctttttaatagctgag
tagtactccattgtg

gaattctaggttgggaaaaagaatgaaggatttctgcatgtgtgatgtgg
atgatgagacacgactagccagcatcttctagaagccgatgatctctgtt
tagacaaaaagttggataagtatcaagtcaaagaaacaaagagcgactaa
gaaagaatattgaaatctagagcgtggggacaacctctctcactacttac
tagcccccagctactcttatggattatggtcaggaggcagccatggctgc
cataatggtaccaatctccatccctgaagcaccaagagttatttgattgg
gtattctgcatacctaggaacactgagtgaccaataccttgtttttagta
tcctataaataaaatatctgagataggttaaatatggtcaaataggatgc
aaaaatctatgagttttgcaggaagtttgctccaaatgacagaaaaatat
ccttagttttgacctcaaagtaataaaagcagaaataatcatggaatgcc
tgtagtgttagggaccagaaagcctctataaatggctttgccccattttc
tctagatcaccaccagcaacaccttcttgtgttaaagctgcagtgttcac
tagagtatgttcactagagtgtgttcatgtacagtgtaggtagaactatt
ctgagacagggtaggagaggtggttcagtagctaagagtacttgctgctc
tcccagaatgatcaagttcacttctcacatattctgatgtacaactaact
ttaactaaagctataggttccagtcctcttttcaggcctccatggacaca
cacacacagcataaactcacatgcatatacacaaaaaaattaaaattaaa
gaaagtaaatattctgtggtagtttacttaggaggtgttggtttttagta
tctaccccactctcatactgagatagactgaaagaagaaaggaataatct
taaccatggtctagaccctgattactctcatctattactacattaatttt
tattttccaaaaagaaagaatgtttttcctcatgaaatgaatgaaccttc
ttcactcttaagtgatcaacatctgtacacccaattgacgcatggcaatc
ccctaaaataagcgtcctctttggtcttaacctaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_197011092_197012231
seq2: B6Ng01-181F08.g_63_1199 (reverse)

seq1  AGTTAGTTTAAAGAACAAAGAGGAACTGCTTATTTTAGGGGATTTCCATG  50
      |||||| || |||| |||||||||   ||||||||||||||||| |||||
seq2  AGTTAGGTT-AAGACCAAAGAGGA--CGCTTATTTTAGGGGATTGCCATG  47

seq1  CTGTC-ATTTGGTGTACAGAATGTTGATCACTTAAGAGTGAAAGAAGTTC  99
      | ||| ||| ||||||||| ||||||||||||||||||||||  | ||||
seq2  C-GTCAATTGGGTGTACAG-ATGTTGATCACTTAAGAGTGAAGAAGGTTC  95

seq1  ATTCATTTCATGAGAAAAAACATTCTTTCCTTTTTGGAAAATAAAAATTA  149
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  ATTCATTTCATGAGGAAAAACATTCTTT-CTTTTTGGAAAATAAAAATTA  144

seq1  ATGTAGTATTAGATGAGAGTAATCAGGGTCTAGACCATGGTTAAGATTAT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTAATAGATGAGAGTAATCAGGGTCTAGACCATGGTTAAGATTAT  194

seq1  TCCTTTCTTCTTTCAGTCTATCTCAGTATGAGAGT-GGGTAGATACT-AA  247
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TCCTTTCTTCTTTCAGTCTATCTCAGTATGAGAGTGGGGTAGATACTAAA  244

seq1  AACCAACACCTCCTAAGTAAACTACCACAGAATATTTACTTTCTTTAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACACCTCCTAAGTAAACTACCACAGAATATTTACTTTCTTTAATT  294

seq1  TTAATTTTTTTGTGTATATGCATGTGAGTTTATGCTGTGTGTGTGTGTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTGTGTATATGCATGTGAGTTTATGCTGTGTGTGTGTGTCC  344

seq1  ATGGAGGCCTGAAAAGAGGACTGGAACCTATAGCTTTAGTTAAAGTTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCCTGAAAAGAGGACTGGAACCTATAGCTTTAGTTAAAGTTAGT  394

seq1  TGTACATCAGAATATGTGAGAAGTGAACTTGATCATTCTGGGAGAGCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCAGAATATGTGAGAAGTGAACTTGATCATTCTGGGAGAGCAGC  444

seq1  AAGTACTCTTAGCTACTGAACCACCTCTCCTACCCTGTCTCAGAATAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTTAGCTACTGAACCACCTCTCCTACCCTGTCTCAGAATAGTT  494

seq1  CTACCTACACTGTACATGAACACACTCTAGTGAACATACTCTAGTGAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACACTGTACATGAACACACTCTAGTGAACATACTCTAGTGAACA  544

seq1  CTGCAGCTTTAACACAAGAAGGTGTTGCTGGTGGTGATCTAGAGAAAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTTAACACAAGAAGGTGTTGCTGGTGGTGATCTAGAGAAAATG  594

seq1  GGGCAAAGCCATTTATAGAGGCTTTCTGGTCCCTAACACTACAGGCATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGCCATTTATAGAGGCTTTCTGGTCCCTAACACTACAGGCATTC  644

seq1  CATGATTATTTCTGCTTTTATTACTTTGAGGTCAAAACTAAGGATATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTATTTCTGCTTTTATTACTTTGAGGTCAAAACTAAGGATATTTT  694

seq1  TCTGTCATTTGGAGCAAACTTCCTGCAAAACTCATAGATTTTTGCATCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTTGGAGCAAACTTCCTGCAAAACTCATAGATTTTTGCATCCT  744

seq1  ATTTGACCATATTTAACCTATCTCAGATATTTTATTTATAGGATACTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCATATTTAACCTATCTCAGATATTTTATTTATAGGATACTAAA  794

seq1  AACAAGGTATTGGTCACTCAGTGTTCCTAGGTATGCAGAATACCCAATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTATTGGTCACTCAGTGTTCCTAGGTATGCAGAATACCCAATCA  844

seq1  AATAACTCTTGGTGCTTCAGGGATGGAGATTGGTACCATTATGGCAGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCTTGGTGCTTCAGGGATGGAGATTGGTACCATTATGGCAGCCA  894

seq1  TGGCTGCCTCCTGACCATAATCCATAAGAGTAGCTGGGGGCTAGTAAGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTCCTGACCATAATCCATAAGAGTAGCTGGGGGCTAGTAAGTA  944

seq1  GTGAGAGAGGTTGTCCCCACGCTCTAGATTTCAATATTCTTTCTTAGTCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGGTTGTCCCCACGCTCTAGATTTCAATATTCTTTCTTAGTCG  994

seq1  CTCTTTGTTTCTTTGACTTGATACTTATCCAACTTTTTGTCTAAACAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTTTCTTTGACTTGATACTTATCCAACTTTTTGTCTAAACAGAG  1044

seq1  ATCATCGGCTTCTAGAAGATGCTGGCTAGTCGTGTCTCATCATCCACATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCGGCTTCTAGAAGATGCTGGCTAGTCGTGTCTCATCATCCACATC  1094

seq1  ACACATGCAGAAATCCTTCATTCTTTTTCCCAACCTAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAGAAATCCTTCATTCTTTTTCCCAACCTAGAATTC  1137


| Home | SequenceCutter | Blast | Download |