BAC Information

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BAC

Clone NameB6Ng01-182B05
Chromosome1 (Build37)
Map Location 97,464,856 - 97,555,328
singlet/doubletdoublet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182B05.bB6Ng01-182B05.g
ACCGA008066GA008067
length1,0581,153
definitionB6Ng01-182B05.b B6Ng01-182B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,464,856 - 97,465,913)(97,554,182 - 97,555,328)
sequence
gaattctgggcacttttcagagaatatataaatgctagggttctgacaag
catggtgggttgttggttgtcagtttattgttcttgtttgctctttgtta
agtagttgtgtgcaaaaaatgagaagaaatttgatatcctgatgatgaag
atgaatcttgccccagggaactcaattcccccaatcctaaaatgttgcct
cctttcacctctgtcccttatctctcctatctcaaaaatatgttcaacag
tacctgtacatctgcagaatattattatcctaatcaaattgaatttactt
ctgttcttcccctcaggagaagacctaaaaatgcaccacttgtatgcctt
atatgtgtagaattagggaaaaagagaaaatagagatgaatacatgttaa
tttgacttatttgcataatgagaatctaaaactttgcaaaaaccagaaag
cttgtggcagattcctatttctttaaagagctttttatgataagccaaac
caacatttggcaccataagagtgttgagaatattggttacaaagaaacat
ttcataatcctgcataagaacattcatatatggataaataattcaattat
acctaaaaattagtttatggctttgatcacgtaagaaatttatgaaatga
gaagcatgaattttaactgaaacttttacaaacttcttaagtgaacattc
aacgttgcagtaaattccaatgaataaaattaacaaatcctagtcatgaa
tagagggttttctgagttagatgtataatatctaattaccatttcagtga
attcatccataaccaaaattaaaggtttgaatattatggtcatcatgaat
ctttatttatttgtttctccctcagaaactttatattttggtgtttatgg
tgtgtgatagataactcaaattcagtgggtagttcagtgaatcaaccaga
gctcttcctcctctagtgaattagacatgagtcactattattcaacgcag
ctgttacaagtagtgggtgtaaaggagagtgatatataaaatgaaggact
gggaattt

gaattcattgtactttgaagtatccacaaagtttaaggagttaaagtact
ttatagtcatagtctcaatcaatattattaccttgttcttaatggcttca
ttgtattgtgaagattttgtggatattatgttcttaggagatgacacatt
taagtttcattacttgtgactaaatctgtgaatgttgtcagcttctgtct
accatctgtctcaacctattttctgtattttggttctttattttcgcagt
tttcatatattaacaaaaccctaaaaaatacaatgccaaataagggtgta
gagacatatgatctcagctttcatcctccaaacagtctagccaataatta
gtgaaatattttgattcttagtgcaatatttcttaatcatataagactac
taattaaacatgagtgcaggttcatatgtgtttcgtgtaaaaaaacaaaa
aaactatgctgttgcatttatagatttctttcgtggaagatggcacatac
aatcgtacaccatcgtctacctactgtgctcagcaaatgacaataatgtc
acttgtagctgaagaagcttattgagcaggggcacacagtccccttcagt
gctttattttaaagtgcccatcctttaatagagcaagttgtgaaaaatcg
tgttttagtattaaatatagagtgcttctttatcaagtacatggtatgtt
tttgctttaaaaataaaaataaattttgatcacccaattcatagccaatt
atgaaatagtgaagttaaaaaacaaaaatcaaaaaacagtgttcttcaca
tgtttgggaataattttagttttcatgtgataggattgtttacgattttt
ctttttcagactacaatatctttcccctaacatttttctaagccccaact
ttattaagttataaaaagacttcatttaggaaaagtcatgtaaggatttt
tctttcatttcgtaggcacaataagcaacacagaaatgtcaagttctttc
ctttttctttcagtgactgttgttatgtcaatcatgttaatttttcacca
tcaatttagacaccactgaatctccctccccctattctaataaatggaaa
ctactggcataacgaatatggatgttctggttaccacacaccacaacaca
cac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97464856_97465913
seq2: B6Ng01-182B05.b_41_1098

seq1  GAATTCTGGGCACTTTTCAGAGAATATATAAATGCTAGGGTTCTGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCACTTTTCAGAGAATATATAAATGCTAGGGTTCTGACAAG  50

seq1  CATGGTGGGTTGTTGGTTGTCAGTTTATTGTTCTTGTTTGCTCTTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGGTTGTTGGTTGTCAGTTTATTGTTCTTGTTTGCTCTTTGTTA  100

seq1  AGTAGTTGTGTGCAAAAAATGAGAAGAAATTTGATATCCTGATGATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGTGTGCAAAAAATGAGAAGAAATTTGATATCCTGATGATGAAG  150

seq1  ATGAATCTTGCCCCAGGGAACTCAATTCCCCCAATCCTAAAATGTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTTGCCCCAGGGAACTCAATTCCCCCAATCCTAAAATGTTGCCT  200

seq1  CCTTTCACCTCTGTCCCTTATCTCTCCTATCTCAAAAATATGTTCAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCTCTGTCCCTTATCTCTCCTATCTCAAAAATATGTTCAACAG  250

seq1  TACCTGTACATCTGCAGAATATTATTATCCTAATCAAATTGAATTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTACATCTGCAGAATATTATTATCCTAATCAAATTGAATTTACTT  300

seq1  CTGTTCTTCCCCTCAGGAGAAGACCTAAAAATGCACCACTTGTATGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCCCCTCAGGAGAAGACCTAAAAATGCACCACTTGTATGCCTT  350

seq1  ATATGTGTAGAATTAGGGAAAAAGAGAAAATAGAGATGAATACATGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTAGAATTAGGGAAAAAGAGAAAATAGAGATGAATACATGTTAA  400

seq1  TTTGACTTATTTGCATAATGAGAATCTAAAACTTTGCAAAAACCAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTATTTGCATAATGAGAATCTAAAACTTTGCAAAAACCAGAAAG  450

seq1  CTTGTGGCAGATTCCTATTTCTTTAAAGAGCTTTTTATGATAAGCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCAGATTCCTATTTCTTTAAAGAGCTTTTTATGATAAGCCAAAC  500

seq1  CAACATTTGGCACCATAAGAGTGTTGAGAATATTGGTTACAAAGAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGGCACCATAAGAGTGTTGAGAATATTGGTTACAAAGAAACAT  550

seq1  TTCATAATCCTGCATAAGAACATTCATATATGGATAAATAATTCAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATCCTGCATAAGAACATTCATATATGGATAAATAATTCAATTAT  600

seq1  ACCTAAAAATTAGTTTATGGCTTTGATCACGTAAGAAATTTATGAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAATTAGTTTATGGCTTTGATCACGTAAGAAATTTATGAAATGA  650

seq1  GAAGCATGAATTTTAACTGAAACTTTTACAAACTTCTTAAGTGAACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGAATTTTAACTGAAACTTTTACAAACTTCTTAAGTGAACATTC  700

seq1  AACGTTGCAGTAAATTCCAATGAATAAAATTAACAAATCCTAGTCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGCAGTAAATTCCAATGAATAAAATTAACAAATCCTAGTCATGAA  750

seq1  TAGAGGGTTTTCTGAGTTAGATGTATAATATCTAATTACCATTTCAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTTTTCTGAGTTAGATGTATAATATCTAATTACCATTTCAGTGA  800

seq1  ATTCATCCATAACCAAAATTAAGGGTTTGAATATTATGGTCATCATGAAT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCATCCATAACCAAAATTAAAGGTTTGAATATTATGGTCATCATGAAT  850

seq1  CTTTATTTATTTGTTTCTCCCTCAGAAACTTTATATTTTGGTGTTTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTATTTGTTTCTCCCTCAGAAACTTTATATTTTGGTGTTTATGG  900

seq1  TGTGTGATAGATAACTCAAATTCAGTGGGTAGTTCAGTGAATCAACCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATAGATAACTCAAATTCAGTGGGTAGTTCAGTGAATCAACCAGA  950

seq1  GCTCTTCCTCCTCTAGTGGAATTAGACATGAGTCAACTATTATTC-ACGC  999
      ||||||||||||||||| |||||||||||||||| |||||||||| ||||
seq2  GCTCTTCCTCCTCTAGT-GAATTAGACATGAGTC-ACTATTATTCAACGC  998

seq1  AGCTGTTAC-AGTAGTGGGTGTTAAAGGGAGAGTG--ATATAAAATGAAA  1046
      ||||||||| ||||||||||||  || ||||||||  |||||||||||| 
seq2  AGCTGTTACAAGTAGTGGGTGT--AAAGGAGAGTGATATATAAAATGAAG  1046

seq1  GACTGGGGATTT  1058
      ||||||| ||||
seq2  GACTGGGAATTT  1058


seq1: chr1_97554182_97555328
seq2: B6Ng01-182B05.g_60_1212 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGT-GTA--CAG-ACATACATA-TCGTAATGCA  45
      |||||||| |||| |||||| |||  ||| |||| |||| |||| |||| 
seq2  GTGTGTGT-TGTG-GTGTGTGGTAACCAGAACATCCATATTCGTTATGCC  48

seq1  AGTAGTTTCAATTTATTAGAATAGAG---GAGAGAATCAGT-GTGTCTAA  91
      ||||||||| |||||||||||||| |   | |||| ||||| ||||||||
seq2  AGTAGTTTCCATTTATTAGAATAGGGGGAGGGAGATTCAGTGGTGTCTAA  98

seq1  ATTTGATGGTGAAAAA-TAACATTGATTGACAATAAC-ACAGTTCACTGA  139
      | |||||||||||||| ||||| |||||||| ||||| |||| |||||||
seq2  A-TTGATGGTGAAAAATTAACA-TGATTGAC-ATAACAACAG-TCACTGA  144

seq1  AAG-AAAAGGAAAGAACTTTGACATTTCTGTGTGCTTTATTGTGCCTACG  188
      ||| ||||||||||||| |||||||||||||||   ||||||||||||||
seq2  AAGAAAAAGGAAAGAAC-TTGACATTTCTGTGTTGCTTATTGTGCCTACG  193

seq1  AAATGAAAGAAAAATCCTTACATGACTTTTCCTAAATGAAGTCTTTTTAT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGAAAAATCCTTACATGACTTTTCCTAAATGAAGTCTTTTTAT  243

seq1  AACTTAAT-AAGTTGGGGCTTAGAAAAATGTTAGGGGAAAGATATTGTAG  287
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATAAAGTTGGGGCTTAGAAAAATGTTAGGGGAAAGATATTGTAG  293

seq1  TCTGAAAAAGAAAAATCGTAAACAATCCTATCACATGAAAACTAAAATTA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAAGAAAAATCGTAAACAATCCTATCACATGAAAACTAAAATTA  343

seq1  TTCCCAAACATGTGAAGAACACTGTTTTTTGATTTTTGTTTTTTAACTTC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACATGTGAAGAACACTGTTTTTTGATTTTTGTTTTTTAACTTC  393

seq1  ACTATTTCATAATTGGCTATGAATTGGGTGATCAAAATTTATTTTTATTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCATAATTGGCTATGAATTGGGTGATCAAAATTTATTTTTATTT  443

seq1  TTAAAGCAAAAACATACCATGTACTTGATAAAGAAGCACTCTATATTTAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAAAAACATACCATGTACTTGATAAAGAAGCACTCTATATTTAA  493

seq1  TACTAAAACACGATTTTTCACAACTTGCTCTATTAAAGGATGGGCACTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAACACGATTTTTCACAACTTGCTCTATTAAAGGATGGGCACTTT  543

seq1  AAAATAAAGCACTGAAGGGGACTGTGTGCCCCTGCTCAATAAGCTTCTTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGCACTGAAGGGGACTGTGTGCCCCTGCTCAATAAGCTTCTTC  593

seq1  AGCTACAAGTGACATTATTGTCATTTGCTGAGCACAGTAGGTAGACGATG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAGTGACATTATTGTCATTTGCTGAGCACAGTAGGTAGACGATG  643

seq1  GTGTACGATTGTATGTGCCATCTTCCACGAAAGAAATCTATAAATGCAAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGATTGTATGTGCCATCTTCCACGAAAGAAATCTATAAATGCAAC  693

seq1  AGCATAGTTTTTTTGTTTTTTTACACGAAACACATATGAACCTGCACTCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTTTTTTGTTTTTTTACACGAAACACATATGAACCTGCACTCA  743

seq1  TGTTTAATTAGTAGTCTTATATGATTAAGAAATATTGCACTAAGAATCAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTAGTAGTCTTATATGATTAAGAAATATTGCACTAAGAATCAA  793

seq1  AATATTTCACTAATTATTGGCTAGACTGTTTGGAGGATGAAAGCTGAGAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACTAATTATTGGCTAGACTGTTTGGAGGATGAAAGCTGAGAT  843

seq1  CATATGTCTCTACACCCTTATTTGGCATTGTATTTTTTAGGGTTTTGTTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTCTACACCCTTATTTGGCATTGTATTTTTTAGGGTTTTGTTA  893

seq1  ATATATGAAAACTGCGAAAATAAAGAACCAAAATACAGAAAATAGGTTGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAAAACTGCGAAAATAAAGAACCAAAATACAGAAAATAGGTTGA  943

seq1  GACAGATGGTAGACAGAAGCTGACAACATTCACAGATTTAGTCACAAGTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGGTAGACAGAAGCTGACAACATTCACAGATTTAGTCACAAGTA  993

seq1  ATGAAACTTAAATGTGTCATCTCCTAAGAACATAATATCCACAAAATCTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTTAAATGTGTCATCTCCTAAGAACATAATATCCACAAAATCTT  1043

seq1  CACAATACAATGAAGCCATTAAGAACAAGGTAATAATATTGATTGAGACT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAATGAAGCCATTAAGAACAAGGTAATAATATTGATTGAGACT  1093

seq1  ATGACTATAAAGTACTTTAACTCCTTAAACTTTGTGGATACTTCAAAGTA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATAAAGTACTTTAACTCCTTAAACTTTGTGGATACTTCAAAGTA  1143

seq1  CAATGAATTC  1147
      ||||||||||
seq2  CAATGAATTC  1153


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