BAC Information

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BAC

Clone NameB6Ng01-183G11
Chromosome1 (Build37)
Map Location 189,185,420 - 189,338,260
singlet/doubletdoublet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183G11.bB6Ng01-183G11.g
ACCGA009038GA009039
length1,0911,214
definitionB6Ng01-183G11.b B6Ng01-183G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,337,171 - 189,338,260)(189,185,420 - 189,186,589)
sequence
gaattcttttgtcatgagaataggagtttatattcgtttcagtgaaagca
cataaattgttctagacaagaaaaacaaaactagcccaaggcagtatttt
cattatagggaaaggcacatgtccatgaatatctagtttaatattaacaa
aagccattcaattagctatgcatgtgccattgttatgaatatttattcgt
gtctcagctaagttacactgatatcttttattcactggttcagagattga
aatgttacaggcattgcctgccttgccctgctggagagaagaaaaggaaa
agaaccgttgaccagagcagcaccaaagatgcagatttccttagaaccct
cgggtttatgttcaggaagccacattgctgatcgatttcacttctcccca
gaaatcattcaaagcaaattctgggaacggatactgctgtgttaatgaac
attgaaaattgaaaagatgtttctccttgtcccttggaagagcaatcagt
ggtcagtgaaaagaggaaaatgcatggaaattacaggtgaaggctacaaa
ttggatcaggatgatataaacgtgataggcaaggtatttcctgatcaatg
cttggcttggagaatcagtctgggctacttcccactaaggcagcaagcag
ggctcagtgtcctaaacagaccattgctgtggtctgctttccatcctgac
ttgcttgtgagaagaaacacattatctctacctaattcagatacgttcaa
catttcaaggaaaaaccaagtcttggcatgctatctaggatagttaatgt
tgactgtcaaattgacaggatctagaaacatccaagagacaaacctctag
ggtgtctgtgagagtgttcctagattgggttaatggtgggaggaagaccc
atcccggaaatgtggatagcagcattccatggacaagactgagtattact
gagaaagaaggcatggcagagtgtagtcttctctcggctatctgactgtg
gacaacaatgtgacagctgcctcagacttcttgccccatgcctcccctca
tgatagagtataacccttcagattacaccaacaacccgcct

gaattcagagccaacagctcagccaggctctgggcagaaagatcccaact
tacccaggattcacttggttttctccatgtcccaatcagcattgcaatag
ataaggaccaggatatgtttattggtgtgtcccatagtaggcatagttaa
gacaagctgtggctgtagctcttcctgggtccaaggtgggagtggagttg
ttgagacagtctcaactctgcacccaggttgccctaaaatgagagattat
cttgcctcagtccttggccctcggagtgctggaattacaagtgtgtgcca
ccgtacccggctttggatcccttctttaataagacttttgcatctgtgaa
aataaagcatctcgcaggtcgttaggctaggtaaacggctcattgcagaa
caaaccgagatcaattacagtcatattctgtcaatgcagaatgtgccctc
tccctgtcctctaattaaatgccacttgctaggtatttatggagcacacg
ccatatggctactgtgagtactgtatgagtttcatacagtactcactgcc
cataagagacttaaaatcttttttagaacataaattcagcaatgatattc
aaaacagtccatgagcagactggtcccagcattggccaatgggcaccaaa
aaaaaaaaaaaaaaaaaaaaagagcaatcttatggaaacagatgcactgc
cagaaaccatcctgtgaatacaagatctgctcgcactgggactttcaaag
cattaaaaagatttgggaaaatgtacagttcctataggccctgggtcaca
atgagagatcattgtagaggtgccccaccacccagatctgtccagtgatg
ccctgaggttgtccaggaaactctttactttgactccttatctgtgttct
tttgctgtcatgtccttgttcgctgcccaatattcccactgagctcaaag
aagaatagcccaagtagtctgttctaaattggaagtcttggttaccgatg
aactctttttctatcagtcctcggcttttaagggtaacttttttccctct
ttgtctcttatatgcatttggtgtatgagttacaccacattgttgcacat
gccatggccagaagggccttgtatccaggtgttctttccttttgcccaga
cctccactttaactttcttggacacagcttctttactggatcccaagatc
ttcagtggattgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189337171_189338260
seq2: B6Ng01-183G11.b_39_1129 (reverse)

seq1  AGGCGGGTTTGTTTGGTGTAATCTGA--GGGTATACTCTATCATGGAGGG  48
      |||||||||   ||||||||||||||  || ||||||||||||| |||||
seq2  AGGCGGGTT--GTTGGTGTAATCTGAAGGGTTATACTCTATCAT-GAGGG  47

seq1  GAGGCATGGGGGCAGAAGTCTGAGGCAGCTGTCACATTG-TGTCCACAGT  97
      |||||||||||  |||||||||||||||||||||||||| ||||||||||
seq2  GAGGCATGGGGCAAGAAGTCTGAGGCAGCTGTCACATTGTTGTCCACAGT  97

seq1  CAGATAGCCGAGAG-AGACTACACTTCTGCCATGCCTTCTTTCTCAGTAA  146
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  CAGATAGCCGAGAGAAGACTACAC-TCTGCCATGCCTTCTTTCTCAGTAA  146

seq1  TACTCAGTCTTGTCCATGGAATGCTGCTATCCACATTTCC-GGATGGGTC  195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACTCAGTCTTGTCCATGGAATGCTGCTATCCACATTTCCGGGATGGGTC  196

seq1  TTCCTCCCACCATTAACCCAATCTAGGAACACTCTCACAGACACCCTAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCACCATTAACCCAATCTAGGAACACTCTCACAGACACCCTAGA  246

seq1  GGTTTGTCTCTTGGATGTTTCTAGATCCTGTCAATTTGACAGTCAACATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCTCTTGGATGTTTCTAGATCCTGTCAATTTGACAGTCAACATT  296

seq1  AACTATCCTAGATAGCATGCCAAGACTTGGTTTTTCCTTGAAATGTTGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCTAGATAGCATGCCAAGACTTGGTTTTTCCTTGAAATGTTGAA  346

seq1  CGTATCTGAATTAGGTAGAGATAATGTGTTTCTTCTCACAAGCAAGTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTGAATTAGGTAGAGATAATGTGTTTCTTCTCACAAGCAAGTCAG  396

seq1  GATGGAAAGCAGACCACAGCAATGGTCTGTTTAGGACACTGAGCCCTGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAGCAGACCACAGCAATGGTCTGTTTAGGACACTGAGCCCTGCT  446

seq1  TGCTGCCTTAGTGGGAAGTAGCCCAGACTGATTCTCCAAGCCAAGCATTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTTAGTGGGAAGTAGCCCAGACTGATTCTCCAAGCCAAGCATTG  496

seq1  ATCAGGAAATACCTTGCCTATCACGTTTATATCATCCTGATCCAATTTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAATACCTTGCCTATCACGTTTATATCATCCTGATCCAATTTGT  546

seq1  AGCCTTCACCTGTAATTTCCATGCATTTTCCTCTTTTCACTGACCACTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCACCTGTAATTTCCATGCATTTTCCTCTTTTCACTGACCACTGA  596

seq1  TTGCTCTTCCAAGGGACAAGGAGAAACATCTTTTCAATTTTCAATGTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCCAAGGGACAAGGAGAAACATCTTTTCAATTTTCAATGTTCA  646

seq1  TTAACACAGCAGTATCCGTTCCCAGAATTTGCTTTGAATGATTTCTGGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGCAGTATCCGTTCCCAGAATTTGCTTTGAATGATTTCTGGGG  696

seq1  AGAAGTGAAATCGATCAGCAATGTGGCTTCCTGAACATAAACCCGAGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAAATCGATCAGCAATGTGGCTTCCTGAACATAAACCCGAGGGT  746

seq1  TCTAAGGAAATCTGCATCTTTGGTGCTGCTCTGGTCAACGGTTCTTTTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAAATCTGCATCTTTGGTGCTGCTCTGGTCAACGGTTCTTTTCC  796

seq1  TTTTCTTCTCTCCAGCAGGGCAAGGCAGGCAATGCCTGTAACATTTCAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTCTCCAGCAGGGCAAGGCAGGCAATGCCTGTAACATTTCAAT  846

seq1  CTCTGAACCAGTGAATAAAAGATATCAGTGTAACTTAGCTGAGACACGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACCAGTGAATAAAAGATATCAGTGTAACTTAGCTGAGACACGAA  896

seq1  TAAATATTCATAACAATGGCACATGCATAGCTAATTGAATGGCTTTTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCATAACAATGGCACATGCATAGCTAATTGAATGGCTTTTGTT  946

seq1  AATATTAAACTAGATATTCATGGACATGTGCCTTTCCCTATAATGAAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAACTAGATATTCATGGACATGTGCCTTTCCCTATAATGAAAAT  996

seq1  ACTGCCTTGGGCTAGTTTTGTTTTTCTTGTCTAGAACAATTTATGTGCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTGGGCTAGTTTTGTTTTTCTTGTCTAGAACAATTTATGTGCTT  1046

seq1  TCACTGAAACGAATATAAACTCCTATTCTCATGACAAAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAACGAATATAAACTCCTATTCTCATGACAAAAGAATTC  1091


seq1: chr1_189185420_189186589
seq2: B6Ng01-183G11.g_67_1280

seq1  GAATTCAGAGCCAACAGCTCAGCCAGGCTCTGGGCAGAAAGATCCCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCAACAGCTCAGCCAGGCTCTGGGCAGAAAGATCCCAACT  50

seq1  TACCCAGGATTCACTTGGTTTTCTCCATGTCCCAATCAGCATTGCAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGATTCACTTGGTTTTCTCCATGTCCCAATCAGCATTGCAATAG  100

seq1  ATAAGGACCAGGATATGTTTATTGGTGTGTCCCATAGTAGGCATAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACCAGGATATGTTTATTGGTGTGTCCCATAGTAGGCATAGTTAA  150

seq1  GACAAGCTGTGGCTGTAGCTCTTCCTGGGTCCAAGGTGGGAGTGGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTGTGGCTGTAGCTCTTCCTGGGTCCAAGGTGGGAGTGGAGTTG  200

seq1  TTGAGACAGTCTCAACTCTGCACCCAGGTTGCCCTAAAATGAGAGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGTCTCAACTCTGCACCCAGGTTGCCCTAAAATGAGAGATTAT  250

seq1  CTTGCCTCAGTCCTTGGCCCTCGGAGTGCTGGAATTACAAGTGTGTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCAGTCCTTGGCCCTCGGAGTGCTGGAATTACAAGTGTGTGCCA  300

seq1  CCGTACCCGGCTTTGGATCCCTTCTTTAATAAGACTTTTGCATCTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACCCGGCTTTGGATCCCTTCTTTAATAAGACTTTTGCATCTGTGAA  350

seq1  AATAAAGCATCTCGCAGGTCGTTAGGCTAGGTAAACGGCTCATTGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCATCTCGCAGGTCGTTAGGCTAGGTAAACGGCTCATTGCAGAA  400

seq1  CAAACCGAGATCAATTACAGTCATATTCTGTCAATGCAGAATGTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCGAGATCAATTACAGTCATATTCTGTCAATGCAGAATGTGCCCTC  450

seq1  TCCCTGTCCTCTAATTAAATGCCACTTGCTAGGTATTTATGGAGCACACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCCTCTAATTAAATGCCACTTGCTAGGTATTTATGGAGCACACG  500

seq1  CCATATGGCTACTGTGAGTACTGTATGAGTTTCATACAGTACTCACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGCTACTGTGAGTACTGTATGAGTTTCATACAGTACTCACTGCC  550

seq1  CATAAGAGACTTAAAATCTTTTTTAGAACATAAATTCAGCAATGATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGACTTAAAATCTTTTTTAGAACATAAATTCAGCAATGATATTC  600

seq1  AAAACAGTCCATGAGCAGACTGGTCCCAGCATTGGCCAATGGGCACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTCCATGAGCAGACTGGTCCCAGCATTGGCCAATGGGCACCAAA  650

seq1  AAAAAAAAAAAAAAAAAAAAAGAGCAATCTTATGGAAACAGATGCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGAGCAATCTTATGGAAACAGATGCACTGC  700

seq1  CAGAAACCATCCTGTGAATACAAGATCTGCTCGCACT-GGACTTTCAAAG  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAAACCATCCTGTGAATACAAGATCTGCTCGCACTGGGACTTTCAAAG  750

seq1  CATTAAAAAGATTTGGGAAAATGTACAGTTCCTATAGGCCCTGGGTCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGATTTGGGAAAATGTACAGTTCCTATAGGCCCTGGGTCACA  800

seq1  ATGAGAGATCATTGTAGAGGTGCCCCACCACCCAGATCTGTCCAGTGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGATCATTGTAGAGGTGCCCCACCACCCAGATCTGTCCAGTGATG  850

seq1  CCCTGAGGTTGTCCAGG-AACTC-TTACTTTGACTCCTTATCTGTGTTC-  896
      ||||||||||||||||| ||||| ||||||||||||||||||||||||| 
seq2  CCCTGAGGTTGTCCAGGAAACTCTTTACTTTGACTCCTTATCTGTGTTCT  900

seq1  TTTGCTGTCATGTCCTTG-TCGCTGCCC-ATAT--CCACTGAGCTC-AAG  941
      |||||||||||||||||| ||||||||| ||||  ||||||||||| |||
seq2  TTTGCTGTCATGTCCTTGTTCGCTGCCCAATATTCCCACTGAGCTCAAAG  950

seq1  AAG-ATAGCCC-AGTAGTCTG-TCT-AATTGG-AGTCT--GGTAACGATG  984
      ||| ||||||| ||||||||| ||| |||||| |||||  | || |||||
seq2  AAGAATAGCCCAAGTAGTCTGTTCTAAATTGGAAGTCTTGGTTACCGATG  1000

seq1  AACTC--TTTCTATCAGT-CTCGCCTTT--AAGGTAACTTTTT--CCTCT  1027
      |||||  ||||||||||| |||| ||||  | |||||||||||  |||||
seq2  AACTCTTTTTCTATCAGTCCTCGGCTTTTAAGGGTAACTTTTTTCCCTCT  1050

seq1  TTGTCTCT--TATGCATTT-GTGTATGAG-TACA-CACAT--GTGCACAT  1070
      ||||||||  ||||||||| ||||||||| |||| |||||   |||||||
seq2  TTGTCTCTTATATGCATTTGGTGTATGAGTTACACCACATTGTTGCACAT  1100

seq1  G-CAT-GCCAGA--GGCC-TGTA-CCAGGTG-TCTT--CCTTTGCCCAG-  1110
      | ||| ||||||  |||| |||| ||||||| ||||  | ||||||||| 
seq2  GCCATGGCCAGAAGGGCCTTGTATCCAGGTGTTCTTTCCTTTTGCCCAGA  1150

seq1  -CTCCACTTTA--CTTCTT-GACACAGTCTCTTCACT-GAGCCCAGAGTC  1155
       ||||||||||   ||||| |||||||  |||| ||| || |||| ||  
seq2  CCTCCACTTTAACTTTCTTGGACACAGCTTCTTTACTGGATCCCA-AGAT  1199

seq1  CCTCAGTGGATTGGA  1170
      | |||||||||||||
seq2  CTTCAGTGGATTGGA  1214


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