BAC Information

Click to search

BAC

Clone NameB6Ng01-185N02
Chromosome1 (Build37)
Map Location 3,206,787 - 3,416,337
singlet/doubletdoublet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N02.bB6Ng01-185N02.g
ACCGA010825GA010826
length8301,032
definitionB6Ng01-185N02.b B6Ng01-185N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,415,509 - 3,416,337)(3,206,787 - 3,207,801)
sequence
gaattctgtctgtgtgttgttgggaggctccatttcatgtttcgtacata
tgaaactctaatgcaccaaatacttattttcttcttccagaagaacccta
tcaatagtattaggtttactatgaggtcacagtattagaagagtaatggt
ttcttgtgctggttcgtgagaaccacagaccagagagctctttgcagcct
ttaaatctgtggtagcaaaatgtcaagaatatgcatgatttcctcccagt
aggaaccagaaataaagtagtcctctgtgcaagttcaaagacaagcacag
tcttaatttactccttccaaatgcaaatactgcttatgaagactttagga
tatgccccaccttagatagcatcaaactataaatatcactgccatcttct
ctcacctgggcttctccagtagtgcaagtccatgcctctgcttctttctt
tacccacctgacttctgttttccaagcaatgaacaatgataaagtccatg
tcagatatcttttttttttttcctatcgaaaactctccagcaggataaca
tttacacaggggaaaaataaaaaatgatgggtgctgcatgtgtcctgtat
gaactcactgaataagtaaatgtatataaattaactaaagagagaagcag
acatagacatttgacagttttactctctggtaattcatgttctgaaatac
aaaatgaacacagtgaataaccacaaaaatattgtttttcctctggtcaa
aatatgaataaaaacaataggcatgaacagtataacagtcacttatgtat
aggtgggaagggaagggacagggggaggga

gaattctgtctcacagtggacaatccagaaagtcatgatgcaccaatgga
ggacaataaatatcccaaaatacagctggaaaaccgaggcaaagagggcg
aatgtgatgaccctggcagcgatggtgaagaaatgccagcagaactgaat
gatgacagccatgtagctgatgggctttttgtcatctcgggagtcccgaa
gagccttctggtaggaggctagggcccaagccaaggacacaagggaggct
gctgctgtgaaacctacaaaggcaaacaggaagacattggtcaaaagtga
gagacagtgatggtatgggaggtcaagccacacggccgtggtgtcttggg
acaagatagctaaacctcagcagagtctattcatttctttgagttttaac
tgggttaaacaaccctatgaaaatcccagtagccatcctctgtgaagcaa
cactctaaaaacccgagttaatgggaacacaaagccagcacagtgtttga
gatctggaaatgtggtgggactagctttcctggtgttttgtaagttgatc
aagggccctgtttgtttagcaggaaaactaccatatgcttgagggtggga
actggctgttgctttaacttgagaaaatattgtcttcatgcatgattgtg
gctggcatttgaagccagggttttggtttagaagtgccgatctccaaggc
ttggagagtctttctgtttttaacagggacagtgatagaagacaccagac
agactagcagctggattgtcttctttcctccaagcaagaatgatgtgcct
tgttcccaaaagcagcatactcctttgtgataaagacgagagtccatgga
gcaagtttgcccttattttctttgaaacaccctgctgtgccatccacccc
tttaattagcatttcagtagtcctcctgtcagattttgcaacctgcttta
cctgccttcttccttaaatgaaagaaaattctgcctccctggtccatttc
acctcttaactttttgttaaataaaaatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3415509_3416337
seq2: B6Ng01-185N02.b_43_872 (reverse)

seq1  TCCCT-CCCCTGTCCCTTCCCTTCCCACCTATACATAAGTGACTGTTATA  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCCTGTCCCTTCCCTTCCCACCTATACATAAGTGACTGTTATA  50

seq1  CTGTTCATGCCTATTGTTTTTATTCATATTTTGACCAGAGGAAAAACAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATGCCTATTGTTTTTATTCATATTTTGACCAGAGGAAAAACAAT  100

seq1  ATTTTTGTGGTTATTCACTGTGTTCATTTTGTATTTCAGAACATGAATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGGTTATTCACTGTGTTCATTTTGTATTTCAGAACATGAATTA  150

seq1  CCAGAGAGTAAAACTGTCAAATGTCTATGTCTGCTTCTCTCTTTAGTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTAAAACTGTCAAATGTCTATGTCTGCTTCTCTCTTTAGTTAA  200

seq1  TTTATATACATTTACTTATTCAGTGAGTTCATACAGGACACATGCAGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACATTTACTTATTCAGTGAGTTCATACAGGACACATGCAGCAC  250

seq1  CCATCATTTTTTATTTTTCCCCTGTGTAAATGTTATCCTGCTGGAGAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTTTTATTTTTCCCCTGTGTAAATGTTATCCTGCTGGAGAGTT  300

seq1  TTCGATAGGAAAAAAAAAAAAGATATCTGACATGGACTTTATCATTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATAGGAAAAAAAAAAAAGATATCTGACATGGACTTTATCATTGTTC  350

seq1  ATTGCTTGGAAAACAGAAGTCAGGTGGGTAAAGAAAGAAGCAGAGGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGGAAAACAGAAGTCAGGTGGGTAAAGAAAGAAGCAGAGGCATG  400

seq1  GACTTGCACTACTGGAGAAGCCCAGGTGAGAGAAGATGGCAGTGATATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCACTACTGGAGAAGCCCAGGTGAGAGAAGATGGCAGTGATATTT  450

seq1  ATAGTTTGATGCTATCTAAGGTGGGGCATATCCTAAAGTCTTCATAAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGATGCTATCTAAGGTGGGGCATATCCTAAAGTCTTCATAAGCA  500

seq1  GTATTTGCATTTGGAAGGAGTAAATTAAGACTGTGCTTGTCTTTGAACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCATTTGGAAGGAGTAAATTAAGACTGTGCTTGTCTTTGAACTT  550

seq1  GCACAGAGGACTACTTTATTTCTGGTTCCTACTGGGAGGAAATCATGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGGACTACTTTATTTCTGGTTCCTACTGGGAGGAAATCATGCAT  600

seq1  ATTCTTGACATTTTGCTACCACAGATTTAAAGGCTGCAAAGAGCTCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGACATTTTGCTACCACAGATTTAAAGGCTGCAAAGAGCTCTCTG  650

seq1  GTCTGTGGTTCTCACGAACCAGCACAAGAAACCATTACTCTTCTAATACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTTCTCACGAACCAGCACAAGAAACCATTACTCTTCTAATACT  700

seq1  GTGACCTCATAGTAAACCTAATACTATTGATAGGGTTCTTCTGGAAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCATAGTAAACCTAATACTATTGATAGGGTTCTTCTGGAAGAAG  750

seq1  AAAATAAGTATTTGGTGCATTAGAGTTTCATATGTACGAAACATGAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTATTTGGTGCATTAGAGTTTCATATGTACGAAACATGAAATG  800

seq1  GAGCCTCCCAACAACACACAGACAGAATTC  829
      ||||||||||||||||||||||||||||||
seq2  GAGCCTCCCAACAACACACAGACAGAATTC  830


seq1: chr1_3206787_3207801
seq2: B6Ng01-185N02.g_65_1096

seq1  GAATTCTGTCTCACAGTGGACAATCCAGAAAGTCATGATGCACCAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCACAGTGGACAATCCAGAAAGTCATGATGCACCAATGGA  50

seq1  GGACAATAAATATCCCAAAATACAGCTGGAAAACCGAGGCAAAGAGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAAATATCCCAAAATACAGCTGGAAAACCGAGGCAAAGAGGGCG  100

seq1  AATGTGATGACCCTGGCAGCGATGGTGAAGAAATGCCAGCAGAACTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATGACCCTGGCAGCGATGGTGAAGAAATGCCAGCAGAACTGAAT  150

seq1  GATGACAGCCATGTAGCTGATGGGCTTTTTGTCATCTCGGGAGTCCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGCCATGTAGCTGATGGGCTTTTTGTCATCTCGGGAGTCCCGAA  200

seq1  GAGCCTTCTGGTAGGAGGCTAGGGCCCAAGCCAAGGACACAAGGGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCTGGTAGGAGGCTAGGGCCCAAGCCAAGGACACAAGGGAGGCT  250

seq1  GCTGCTGTGAAACCTACAAAGGCAAACAGGAAGACATTGGTCAAAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGAAACCTACAAAGGCAAACAGGAAGACATTGGTCAAAAGTGA  300

seq1  GAGACAGTGATGGTATGGGAGGTCAAGCCACACGGCCGTGGTGTCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTGATGGTATGGGAGGTCAAGCCACACGGCCGTGGTGTCTTGGG  350

seq1  ACAAGATAGCTAAACCTCAGCAGAGTCTATTCATTTCTTTGAGTTTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGCTAAACCTCAGCAGAGTCTATTCATTTCTTTGAGTTTTAAC  400

seq1  TGGGTTAAACAACCCTATGAAAATCCCAGTAGCCATCCTCTGTGAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAACAACCCTATGAAAATCCCAGTAGCCATCCTCTGTGAAGCAA  450

seq1  CACTCTAAAAACCCGAGTTAATGGGAACACAAAGCCAGCACAGTGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAAAACCCGAGTTAATGGGAACACAAAGCCAGCACAGTGTTTGA  500

seq1  GATCTGGAAATGTGGTGGGACTAGCTTTCCTGGTGTTTTGTAAGTTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAAATGTGGTGGGACTAGCTTTCCTGGTGTTTTGTAAGTTGATC  550

seq1  AAGGGCCCTGTTTGTTTAGCAGGAAAACTACCATATGCTTGAGGGTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCTGTTTGTTTAGCAGGAAAACTACCATATGCTTGAGGGTGGGA  600

seq1  ACTGGCTGTTGCTTTAACTTGAGAAAATATTGTCTTCATGCATGATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTTGCTTTAACTTGAGAAAATATTGTCTTCATGCATGATTGTG  650

seq1  GCTGGCATTTGAAGCCAGGGTTTTGGTTTAGAAGTGCCGATCTCCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATTTGAAGCCAGGGTTTTGGTTTAGAAGTGCCGATCTCCAAGGC  700

seq1  TTGGAGAGTCTTTCTGTTTTTAACAGGGACAGTGATAGAAGACACCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGTCTTTCTGTTTTTAACAGGGACAGTGATAGAAGACACCAGAC  750

seq1  AGACTAGCAGCTGGATTGTCTTCTTTCCTCCAAGCAAGAATGATGTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCAGCTGGATTGTCTTCTTTCCTCCAAGCAAGAATGATGTGCCT  800

seq1  TGTTCCCAAAAGCAGCATACTCCTTTGTGATAAAGACGAGAGTCCATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAAAAGCAGCATACTCCTTTGTGATAAAGACGAGAGTCCATGGA  850

seq1  GCAAGTTTGCCCTTATTT--CTTGAAACA-CCTGCTGTGCCAT-CACCC-  895
      ||||||||||||||||||   |||||||| ||||||||||||| ||||| 
seq2  GCAAGTTTGCCCTTATTTTCTTTGAAACACCCTGCTGTGCCATCCACCCC  900

seq1  -TTAA-TAGCATTTCAGTAGT-CTCCTGTCAGATTTTGC-ACCTGCTT--  939
       |||| ||||||||||||||| ||||||||||||||||| ||||||||  
seq2  TTTAATTAGCATTTCAGTAGTCCTCCTGTCAGATTTTGCAACCTGCTTTA  950

seq1  ACTGCCTTC-TCCTTAAATG-AAGAAATATCTG-CTCCCTG--TCATTTC  984
       |||||||| |||||||||| ||||||  |||| |||||||   ||||||
seq2  CCTGCCTTCTTCCTTAAATGAAAGAAAATTCTGCCTCCCTGGTCCATTTC  1000

seq1  A-CTCTTAACTTTTTGTAAAATAAAAATCATA  1015
      | ||||||||||||||| ||||||||||||||
seq2  ACCTCTTAACTTTTTGTTAAATAAAAATCATA  1032


| Home | SequenceCutter | Blast | Download |