BAC Information

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BAC

Clone NameB6Ng01-186J22
Chromosome1 (Build37)
Map Location 82,299,143 - 82,454,616
singlet/doubletdoublet
Overlap geneRhbdd1, Col4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186J22.bB6Ng01-186J22.g
ACCGA011411GA011412
length1,077491
definitionB6Ng01-186J22.b B6Ng01-186J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,453,538 - 82,454,616)(82,299,143 - 82,299,639)
sequence
gaattcaatatgaatttggaggaagggtggtacacagcagccagtgatca
gtttattcaaggaaggagtttaacaagtagcatctagaaacatggagagg
gcaaattagtcagctaaatgggtctaatggtataaacggccagacatggg
tgctgccatgaccccatagaaacttcagttaaggaacaaaaggaagaaaa
aggatgccaagcagttaaaatactctgcaggactagtgaggctgtgccaa
gatccataaggatgtatctgagccttgtcaagggtgggggcagggggctg
atggataccacctctgtccttgctgccagccaggttagtccatgtgacac
cacctctgtccttgctgccagccaggttagtccatgtgtgctctccatgc
ctgttgaagtttctctctcggagtaagtgtagtctgggccatatgtggct
gctatgaagactcagttgataacttttatgaaggggttggttagcttgaa
atgagtacatcataaacccttgataacaatccattcttggaaaccaaatc
ctaagccaggcagtggtggcacacacctttaatcccagcatttgggagtg
agaggcaggtggatctctgagtccaaggccagcctggtctacgagcaagt
tctgggacagccaggggtacagagagagtgtgtctcaaaagaaaaaaaaa
ccaaaaaaccaaaaacccaacagcagcagacactaccaacaaaatgaatc
ctaataaatttatctcattcctctactcatcatgaaagaatatttgaaca
taaaggcattgcatgttcaatgttttctaaaagcaaaaagccaaaaccaa
ccaaccaaccaatattgaagaaatgggataggctccctctcaaccctcct
ggtctagagctacagagatgatctagccctttactagaccatgtcataat
ctaggtcaatttgttgtacttcttcaggacctccatcgcccagttgcttc
gtggaggtcataagccaatgccatgtactgtgcaaacaaatgagtagaat
ccaatggtcatgggggggggggggggg
aagaccatccctgtggcccaaaaacctgatcggacggctgagtattctga
actgcaagtcaggttgcatttgatagagttgtgtggaaatgatgggggtg
gaggaagctgttcaagaaattatcagttcatctgctggagggggttacct
cggaggtcctaaattgcttttgtttaattatgtgtgggatggtataagaa
ctagcctacttatgatctaggctaagggataaaagcactcttaaaactat
ctcacatgcccagaacttggttgtttaaggtataaagacagaaataaaat
aaaataaaataaaataaaataaaataaaataaaataaaataaaatgaagg
tctactgattttttctgacctcaatgatgatttaaatgacgatttgagtt
tctgactttctttttcattttgggtttccccctgacattaaaatgtacag
ttctctgtgaaaatcttgaccattatttctaccaccttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82453538_82454616
seq2: B6Ng01-186J22.b_45_1121 (reverse)

seq1  CCTCCCCCCCCCCCCCATGA-CATTGGA-TCTACTCATTTGGTTTGCACA  48
      || ||||||||||||||||| ||||||| ||||||||||| |||||||| 
seq2  CCCCCCCCCCCCCCCCATGACCATTGGATTCTACTCATTT-GTTTGCAC-  48

seq1  AGTACATGGCATTGGCTTATGACCTCCACGAAGCAACTGGGGCGATGGAG  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTACATGGCATTGGCTTATGACCTCCACGAAGCAACT-GGGCGATGGAG  97

seq1  GTCCTG-AGAAGTACAACAAATTGACCTAGATTATGACATGGTCTAGTAA  147
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAGAAGTACAACAAATTGACCTAGATTATGACATGGTCTAGTAA  147

seq1  AGGGCTAGATCATCTCTGTAGCTCTAGACCAGGGAGGGTTGAGAGGGAGC  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGCTAGATCATCTCTGTAGCTCTAGACCA-GGAGGGTTGAGAGGGAGC  196

seq1  CTATCCCATTTTCTTCAATATTGGTTGGTTGGTTGGTTTTTGGCTTTTTG  247
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CTATCCCA-TTTCTTCAATATTGGTTGGTTGGTTGG-TTTTGGCTTTTTG  244

seq1  CTTTTAGAAAACATTGAACATGCAATGCCTTTATGTTCAAATATTCTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAAAACATTGAACATGCAATGCCTTTATGTTCAAATATTCTTTC  294

seq1  ATGATGAGTAGAGGAATGAGATAAATTTATTAGGATTCATTTTGTTGGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTAGAGGAATGAGATAAATTTATTAGGATTCATTTTGTTGGTA  344

seq1  GTGTCTGCTGCTGTTGGGTTTTTGGTTTTTTGG-TTTTTTTTCTTTTGAG  396
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTCTGCTGCTGTTGGGTTTTTGGTTTTTTGGTTTTTTTTTCTTTTGAG  394

seq1  ACACACTCTCTCTGTACCCCTGGCTGTCCCAGAACTTGCTCGTAGACCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTCTCTGTACCCCTGGCTGTCCCAGAACTTGCTCGTAGACCAG  444

seq1  GCTGGCCTTGGACTCAGAGATCCACCTGCCTCTCACTCCCAAATGCTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGGACTCAGAGATCCACCTGCCTCTCACTCCCAAATGCTGGG  494

seq1  ATTAAAGGTGTGTGCCACCACTGCCTGGCTTAGGATTTGGTTTCCAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGTGCCACCACTGCCTGGCTTAGGATTTGGTTTCCAAGAA  544

seq1  TGGATTGTTATCAAGGGTTTATGATGTACTCATTTCAAGCTAACCAACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGTTATCAAGGGTTTATGATGTACTCATTTCAAGCTAACCAACCC  594

seq1  CTTCATAAAAGTTATCAACTGAGTCTTCATAGCAGCCACATATGGCCCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAAAGTTATCAACTGAGTCTTCATAGCAGCCACATATGGCCCAG  644

seq1  ACTACACTTACTCCGAGAGAGAAACTTCAACAGGCATGGAGAGCACACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTTACTCCGAGAGAGAAACTTCAACAGGCATGGAGAGCACACAT  694

seq1  GGACTAACCTGGCTGGCAGCAAGGACAGAGGTGGTGTCACATGGACTAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAACCTGGCTGGCAGCAAGGACAGAGGTGGTGTCACATGGACTAAC  744

seq1  CTGGCTGGCAGCAAGGACAGAGGTGGTATCCATCAGCCCCCTGCCCCCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGCAGCAAGGACAGAGGTGGTATCCATCAGCCCCCTGCCCCCAC  794

seq1  CCTTGACAAGGCTCAGATACATCCTTATGGATCTTGGCACAGCCTCACTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACAAGGCTCAGATACATCCTTATGGATCTTGGCACAGCCTCACTA  844

seq1  GTCCTGCAGAGTATTTTAACTGCTTGGCATCCTTTTTCTTCCTTTTGTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAGAGTATTTTAACTGCTTGGCATCCTTTTTCTTCCTTTTGTTC  894

seq1  CTTAACTGAAGTTTCTATGGGGTCATGGCAGCACCCATGTCTGGCCGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGAAGTTTCTATGGGGTCATGGCAGCACCCATGTCTGGCCGTTT  944

seq1  ATACCATTAGACCCATTTAGCTGACTAATTTGCCCTCTCCATGTTTCTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTAGACCCATTTAGCTGACTAATTTGCCCTCTCCATGTTTCTAG  994

seq1  ATGCTACTTGTTAAACTCCTTCCTTGAATAAACTGATCACTGGCTGCTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTGTTAAACTCCTTCCTTGAATAAACTGATCACTGGCTGCTGT  1044

seq1  GTACCACCCTTCCTCCAAATTCATATTGAATTC  1079
      |||||||||||||||||||||||||||||||||
seq2  GTACCACCCTTCCTCCAAATTCATATTGAATTC  1077

seq1: chr1_82299143_82299639
seq2: B6Ng01-186J22.g_67_563

seq1  GAATTCAAGACCATCCCTGTGGCCCAAAAACCTGATCGGACGGCTGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCATCCCTGTGGCCCAAAAACCTGATCGGACGGCTGAGTA  50

seq1  TTCTGAACTGCAAGTCAGGTTGCATTTGATAGAGTTGTGTGGAAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTGCAAGTCAGGTTGCATTTGATAGAGTTGTGTGGAAATGATG  100

seq1  GGGGTGGAGGAAGCTGTTCAAGAAATTATCAGTTCATCTGCTGGAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGAGGAAGCTGTTCAAGAAATTATCAGTTCATCTGCTGGAGGGGG  150

seq1  TTACCTCGGAGGTCCTAAATTGCTTTTGTTTAATTATGTGTGGGATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCGGAGGTCCTAAATTGCTTTTGTTTAATTATGTGTGGGATGGTA  200

seq1  TAAGAACTAGCCTACTTATGATCTAGGCTAAGGGATAAAAGCACTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTAGCCTACTTATGATCTAGGCTAAGGGATAAAAGCACTCTTAA  250

seq1  AACTATCTCACATGCCCAGAACTTGGTTGTTTAAGGTATAAAGACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTCACATGCCCAGAACTTGGTTGTTTAAGGTATAAAGACAGAAA  300

seq1  TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA  350

seq1  TGAAGGTCTACTGATTTTTTCTGACCTCAATGATGATTTAAATGACGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCTACTGATTTTTTCTGACCTCAATGATGATTTAAATGACGATT  400

seq1  TGAGTTTCTGACTTTCTTTTTCAATTTGGGTTTCCCCCTGACATTAAAAT  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGTTTCTGACTTTCTTTTTCATTTTGGGTTTCCCCCTGACATTAAAAT  450

seq1  GTACAGTTCTCTGTGAAAATCTTGACCATTATTTCTACCACCTTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTACAGTTCTCTGTGAAAATCTTGACCATTATTTCTACCACCTTCTT  497