BAC Information

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BAC

Clone NameB6Ng01-187B05
Chromosome1 (Build37)
Map Location 48,961,691 - 49,061,290
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187B05.bB6Ng01-187B05.g
ACCGA011751GA011752
length1,137738
definitionB6Ng01-187B05.b B6Ng01-187B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,060,139 - 49,061,290)(48,961,691 - 48,962,428)
sequence
gaattcatataggagaaaaaccctacaagtgtgaaatatgtaacaaggcc
tttaaatatccatcaagtctttcaaaacataaggtaattcataaaggaga
gaagctatataaatgtggagtattagggaaggccttccactatccatcca
tacattcaaattcaaaataattcatacagaagaaaatccctataagtata
aagcatgtggcaaagcctttgattatccattatgacttttcaagcataag
aaagttcatacagaaatgtcatcataccagtgtgaagtttgtgacaaagc
cttccattatccatccatactttctaaacctaagataatttatacaggag
aaaaaaccctgtaagtgtgaaatatatggcaaggacttatcaatcaagac
tttccaaccatagaaaattcatcaggagagaaaccatacaagtgtgaagt
atgtggaaatgtcttccagtatccttcatcactttctaagcatacgaaaa
tccataatggagaaaacctatgtaattgtgaagtatgtggcaaggccttt
cattatccttcattactttctaaacacataatttatacaggagaaaaacc
agacaagagtgaagtatgtggcacattcttccattatccatcaatatatt
caaaacacaaaataatccatacatatcaaaaaatctgggactaaagactg
gagtttcaattttttaattaattaattaattttttatactccatatttat
tcctgccctgagcaccccctgtctgttccatatctcagacctccttccca
ccaccctatcttcatgtggttgttcccacctccactccatatgacatcta
aacgccctggagtctccagtctcttgagggttaggtgcatcatctctgaa
tgagcacagacccagcagtcctcaactgtatgtgtgttgggggcctcata
tcagctggtgtgtgctgcctatttgatgggtccaatgtttgagagatctt
gtgggaccagattattgaaacttctgtctgtcagggaaccattatctcat
ctctttcagcttctatcaaatgggggacagctgctctgttcatggttgtg
tgcaaatatctggcactgaacctttcagttgccttgt

gaattctcaatgaggatgcaaaccagtgttaaggccaggccctatgcctg
gtagtagatgacaaatacaaagtgaactcattggcttttttcaaggttct
ttgtcttattttttgccatgtttacattttatacttctttttcatatctt
atgatttcctgatttgggttttatgggatttctgtatttgagaacatgtg
catatcttcatctatatatgtttcttatgcttttattttggctcctttcc
ttccgtttgtttgcttgctttattctatctcaggatgtttggttttctat
cttattttaattttttataatatattttaggtacctgtttgttttttaag
aatagagaggaagaaatagtgcagatttatatgggatgagaggggagatt
ctcagaggagttgggggagtgaaaaccacaatcagaatacattgtattaa
gaaagtgtacttcgttgatagaaaaaataactagatactgaggagttata
aggatatgttcctttttctaaaagccctatgcttaatgaaaaatatattt
atttattttatgtattttaatacttagttattcaatgtgtatttgtgtgt
tgggcctttgtgtgtgtgtttgtgttttattgtctgaagtaaagaggtct
acattggtcactctgtcttgctgaagaatatgtttaaaaatatatgtatg
atatttcaaaatggtcagaaaattattgctttagttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49060139_49061290
seq2: B6Ng01-187B05.b_44_1180 (reverse)

seq1  ACAA-GCAACTGAAAGGGTCAGGTGCAGATATTTGCACACAACCAATGGA  49
      |||| |||||||||||| ||||   ||||||||||||||||||| ||| |
seq2  ACAAGGCAACTGAAAGGTTCAGTGCCAGATATTTGCACACAACC-ATGAA  49

seq1  CAGAAGCAGCTGTCCCCCATTTTTGAATTAGGAAAGGCTGAAAGAAGATG  99
      ||| |||||||||||||||  |||||  |||   | |||||||| |||||
seq2  CAG-AGCAGCTGTCCCCCA--TTTGA--TAG---AAGCTGAAAG-AGATG  90

seq1  AGGATAATGGTTTCCCTTGACAAGGACCAGAAGTTTCAATTAATCTGGTC  149
      | ||||||||||  || |||||  || |||||||||||| ||||||||||
seq2  A-GATAATGGTT--CCCTGACA--GA-CAGAAGTTTCAA-TAATCTGGTC  133

seq1  CCACAAGATCTCTCAAACATTGGA-CCATCAAATAGGCAGCACACACCAG  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACAAGATCTCTCAAACATTGGACCCATCAAATAGGCAGCACACACCAG  183

seq1  CTGATATGAGGCCCCCAACACACATACAGTTGAGGACTGCTGGGTCTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGAGGCCCCCAACACACATACAGTTGAGGACTGCTGGGTCTGTG  233

seq1  CTCATTCAGAGATGATGCACCTAACCCTCAAGAGACTGGAGACTCCAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAGAGATGATGCACCTAACCCTCAAGAGACTGGAGACTCCAGGG  283

seq1  CGTTTAGATGTCATATGGAGTGGAGGTGGGAACAACCACATGAAGATAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGATGTCATATGGAGTGGAGGTGGGAACAACCACATGAAGATAGG  333

seq1  GTGGTGGGAAGGAGGTCTGAGATATGGAACAGACAGGGGGTGCTCAGGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGAAGGAGGTCTGAGATATGGAACAGACAGGGGGTGCTCAGGGC  383

seq1  AGGAATAAATATGGAGTATAAAAAATTAATTAATTAATTAAAAAATTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAATATGGAGTATAAAAAATTAATTAATTAATTAAAAAATTGAA  433

seq1  ACTCCAGTCTTTAGTCCCAGATTTTTTGATATGTATGGATTATTTTGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCTTTAGTCCCAGATTTTTTGATATGTATGGATTATTTTGTGT  483

seq1  TTTGAATATATTGATGGATAATGGAAGAATGTGCCACATACTTCACTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATATTGATGGATAATGGAAGAATGTGCCACATACTTCACTCTT  533

seq1  GTCTGGTTTTTCTCCTGTATAAATTATGTGTTTAGAAAGTAATGAAGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTTTCTCCTGTATAAATTATGTGTTTAGAAAGTAATGAAGGAT  583

seq1  AATGAAAGGCCTTGCCACATACTTCACAATTACATAGGTTTTCTCCATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGCCTTGCCACATACTTCACAATTACATAGGTTTTCTCCATTA  633

seq1  TGGATTTTCGTATGCTTAGAAAGTGATGAAGGATACTGGAAGACATTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTCGTATGCTTAGAAAGTGATGAAGGATACTGGAAGACATTTCC  683

seq1  ACATACTTCACACTTGTATGGTTTCTCTCCTGATGAATTTTCTATGGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCACACTTGTATGGTTTCTCTCCTGATGAATTTTCTATGGTTG  733

seq1  GAAAGTCTTGATTGATAAGTCCTTGCCATATATTTCACACTTACAGGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTGATTGATAAGTCCTTGCCATATATTTCACACTTACAGGGTT  783

seq1  TTTTCTCCTGTATAAATTATCTTAGGTTTAGAAAGTATGGATGGATAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTGTATAAATTATCTTAGGTTTAGAAAGTATGGATGGATAATG  833

seq1  GAAGGCTTTGTCACAAACTTCACACTGGTATGATGACATTTCTGTATGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTTGTCACAAACTTCACACTGGTATGATGACATTTCTGTATGAA  883

seq1  CTTTCTTATGCTTGAAAAGTCATAATGGATAATCAAAGGCTTTGCCACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATGCTTGAAAAGTCATAATGGATAATCAAAGGCTTTGCCACAT  933

seq1  GCTTTATACTTATAGGGATTTTCTTCTGTATGAATTATTTTGAATTTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATACTTATAGGGATTTTCTTCTGTATGAATTATTTTGAATTTGAA  983

seq1  TGTATGGATGGATAGTGGAAGGCCTTCCCTAATACTCCACATTTATATAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATGGATAGTGGAAGGCCTTCCCTAATACTCCACATTTATATAG  1033

seq1  CTTCTCTCCTTTATGAATTACCTTATGTTTTGAAAGACTTGATGGATATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTTTATGAATTACCTTATGTTTTGAAAGACTTGATGGATATT  1083

seq1  TAAAGGCCTTGTTACATATTTCACACTTGTAGGGTTTTTCTCCTATATGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTTGTTACATATTTCACACTTGTAGGGTTTTTCTCCTATATGA  1133

seq1  ATTC  1152
      ||||
seq2  ATTC  1137


seq1: chr1_48961691_48962428
seq2: B6Ng01-187B05.g_64_801

seq1  GAATTCTCAATGAGGATGCAAACCAGTGTTAAGGCCAGGCCCTATGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGAGGATGCAAACCAGTGTTAAGGCCAGGCCCTATGCCTG  50

seq1  GTAGTAGATGACAAATACAAAGTGAACTCATTGGCTTTTTTCAAGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGATGACAAATACAAAGTGAACTCATTGGCTTTTTTCAAGGTTCT  100

seq1  TTGTCTTATTTTTTGCCATGTTTACATTTTATACTTCTTTTTCATATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTTTTTGCCATGTTTACATTTTATACTTCTTTTTCATATCTT  150

seq1  ATGATTTCCTGATTTGGGTTTTATGGGATTTCTGTATTTGAGAACATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCCTGATTTGGGTTTTATGGGATTTCTGTATTTGAGAACATGTG  200

seq1  CATATCTTCATCTATATATGTTTCTTATGCTTTTATTTTGGCTCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCATCTATATATGTTTCTTATGCTTTTATTTTGGCTCCTTTCC  250

seq1  TTCCGTTTGTTTGCTTGCTTTATTCTATCTCAGGATGTTTGGTTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTTTGTTTGCTTGCTTTATTCTATCTCAGGATGTTTGGTTTTCTAT  300

seq1  CTTATTTTAATTTTTTATAATATATTTTAGGTACCTGTTTGTTTTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAATTTTTTATAATATATTTTAGGTACCTGTTTGTTTTTTAAG  350

seq1  AATAGAGAGGAAGAAATAGTGCAGATTTATATGGGATGAGAGGGGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAGGAAGAAATAGTGCAGATTTATATGGGATGAGAGGGGAGATT  400

seq1  CTCAGAGGAGTTGGGGGAGTGAAAACCACAATCAGAATACATTGTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGAGTTGGGGGAGTGAAAACCACAATCAGAATACATTGTATTAA  450

seq1  GAAAGTGTACTTCGTTGATAGAAAAAATAACTAGATACTGAGGAGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTACTTCGTTGATAGAAAAAATAACTAGATACTGAGGAGTTATA  500

seq1  AGGATATGTTCCTTTTTCTAAAAGCCCTATGCTTAATGAAAAATATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTTCCTTTTTCTAAAAGCCCTATGCTTAATGAAAAATATATTT  550

seq1  ATTTATTTTATGTATTTTAATACTTAGTTATTCAATGTGTATTTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATGTATTTTAATACTTAGTTATTCAATGTGTATTTGTGTGT  600

seq1  TGGGCCTTTGTGTGTGTGTTTGTGTTTTATTGTCTGAAGTAAAGAGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTTGTGTGTGTGTTTGTGTTTTATTGTCTGAAGTAAAGAGGTCT  650

seq1  ACATTGGTCACTCTGTCTTGCTGAAGAATATGTTTTAAAATATATGTATG  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATTGGTCACTCTGTCTTGCTGAAGAATATGTTTAAAAATATATGTATG  700

seq1  ATATTTCTAAAATGGTCAGAAAATTATTGC-TTAGTTCT  738
      ||||||| |||||||||||||||||||||| ||||||||
seq2  ATATTTC-AAAATGGTCAGAAAATTATTGCTTTAGTTCT  738


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