BAC Information

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BAC

Clone NameB6Ng01-188F20
Chromosome1 (Build37)14 (Build37)
Map Location 81,101,478 - 81,101,52081,858,831 - 81,860,005
singlet/doubletsingletsinglet
Overlap gene9430031J16Rik
Upstream geneA830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream geneEG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188F20.bB6Ng01-188F20.g
ACCGA012682GA012683
length1,1111,172
definitionB6Ng01-188F20.b B6Ng01-188F20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,101,478 - 81,101,520)(81,858,831 - 81,860,005)
sequence
gaattcttaattgaggaataacaaaagactgagaaacacctaaataagtg
ttcaacatctttattcttcagggaaatgcaaatcaaagaaccctgagatt
acacctcacaccagtcaaatggagaagaccaaaaactcaggtgatagcag
atactggtgagaatgggaacactcctccattgctggtgggatggcaagct
ggtacaatcactctgtaaatcaatttggtggttcctcagcaaattggaca
tagtactaactgaggaccccctaataccactcctgggtctatgcccagaa
gatactctaacaggtaagaaggacacatgctccactctgttcatcacaac
attatttataatacccagaagctggaaagaacccacatgtccttcaacag
aggaatggatacagaaaatgtggtacatttataccttggactactactta
gctattagaaacaaggacttcaagtaattcttaggcaaatggatggatct
ggggcatatcatcctgggtgaggtaacccaataacaaaagtacacacata
atatgcactcactgataagtgaatattatgccaggaactctgaataccca
atatacaattcacaaaccacatggaactgattaggaaggaagaacaagtg
tggatactttgatctttcttagaagtgggaacaaaatgcccactgaagga
gttacagagactgtgtggagctgagactgaaggagtgaccatccagagat
gccccacctggggatccataccatattcaatcaccaaacccagacacttt
tatggatgccagcaagtgcttgctgacagaaacctgttatagctatcacc
ggagaggctccttcacttcctgccaattagaggtggatgctcatagccta
cctttggattgagaacggggtgcccaatgaaaggatctagaggaaggacc
caaaaagctgaagggtttagcagccccataggaggaacagcatataaact
aaccagtacccccaagctcccagggactaatcaccatgaaagattacaca
tggtggacttatggctccagctgcatatgtagcagaggataggcctagtc
atcatcaatgg

gaattcattagacaacagcctagatgaatttatgaaatccaggttcactg
agggactttgtttttaataacatcagaaaatattttcagaatagtcagag
tattaacttagcttctggcttctacatcacagacacgcagacacacacac
acacacacacacacacacacacacacacatacacacattcattcaatgat
aacaggaacacatgtttatacataaaaataaacaaatgaatgaaaaatac
aatgcaccatgaatcagttgtacctgtattctttcaaatatctctcttaa
tgtattcaagtccaaaataaaatagtattgtgttttgtttctagtctttg
gtagaataattattgaatgccacagattcatgaattgaatcacaatatct
ttaatttgcacatatttacaaaatgtctcactttagagtcacatacagtc
cacatgaaaacgtttattttcatgcttactttcgaataatatcttcatca
cagttattatgtaagtgcaaatataacacaaaaactaacataaaattcag
ctttacctcttaggcactaaggtaaaatgtattaccttgaaatatctaat
agttttcttcttggaaaaatgtttactaattcaaagctagattcctggtc
ctgatttaatatcacccacaaaatatatgtatgccagcttctgttactat
ataaaaatttacaaataaagttacaaaactttagaatgtagtccatacat
tatatatcgccaatatattgttctggatacgaatcaggagacaaacatgt
aagaatttaagtagagacattttaatgtaaaacagaattagtaagctgac
agagatatctaactataatggtgataaagaaaatattaaaatatgctata
gtccattcctctaattttgccttgtgataggatatattggttatgggact
ggaaagatgattcacttactgaatttacttccagaggatccaccaccagc
atgctagcttataaccttctctacctccagttctaggcatctgatgcctt
atcattcctcccaagcataagcacacacacaccacacactcacaacatgt
tatagactattataacaggcaaaaacatctatgcacgttcaaaaaatcgt
aatttcaatgaaaataggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81101478_81101520
seq2: B6Ng01-188F20.b_1113_1155 (reverse)

seq1  CCATTGATGATGGACTAGGCC-ATCCTCTGCTACATATGTAGCT  43
      ||||||||||| ||||||||| ||||||||||||||||| ||||
seq2  CCATTGATGAT-GACTAGGCCTATCCTCTGCTACATATGCAGCT  43


seq1: chr14_81858831_81860005
seq2: B6Ng01-188F20.g_64_1235 (reverse)

seq1  CTCTCTATTTTTAATTTAAATTACGATTTTTTAAACGTGCATAGATG-TT  49
      |||||   |||| ||| ||||||||||||||| |||||||||||||| ||
seq2  CTCTCCTATTTTCATTGAAATTACGATTTTTTGAACGTGCATAGATGTTT  50

seq1  TTGCCTG-TATATATGTCTATACAGTGTGTGTGTGTGTGTGTGTGTGTGT  98
      ||||||| ||||   |||||||   ||| |||| ||||||| ||||||||
seq2  TTGCCTGTTATAATAGTCTATAACATGT-TGTGAGTGTGTG-GTGTGTGT  98

seq1  GTGCTTAATGCCTGGGGAGGATGGAATAAAGCATCAGATGCCTAGAACTG  148
      |||||| |||| ||||  | |||  |||| ||||||||||||||||||||
seq2  GTGCTT-ATGCTTGGGAGGAATG--ATAAGGCATCAGATGCCTAGAACTG  145

seq1  GAGGTAGAGAAGGTTATAAGCTAGCATGCTGGTGGTGGATCCTCTGGAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAGAAGGTTATAAGCTAGCATGCTGGTGGTGGATCCTCTGGAAG  195

seq1  TAAATTCAGTAAGTGAATCATCTTTCCAGTCCCATAACCAATATATCCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAGTAAGTGAATCATCTTTCCAGTCCCATAACCAATATATCCTA  245

seq1  TCACAAGGCAAAATTAGAGGAATGGACTATAGCATATTTTAATATTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGCAAAATTAGAGGAATGGACTATAGCATATTTTAATATTTTCT  295

seq1  TTATCACCATTATAGTTAGATATCTCTGTCAGCTTACTAATTCTGTTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCATTATAGTTAGATATCTCTGTCAGCTTACTAATTCTGTTTTA  345

seq1  CATTAAAATGTCTCTACTTAAATTCTTACATGTTTGTCTCCTGATTCGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATGTCTCTACTTAAATTCTTACATGTTTGTCTCCTGATTCGTA  395

seq1  TCCAGAACAATATATTGGCGATATATAATGTATGGACTACATTCTAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAATATATTGGCGATATATAATGTATGGACTACATTCTAAAGT  445

seq1  TTTGTAACTTTATTTGTAAATTTTTATATAGTAACAGAAGCTGGCATACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACTTTATTTGTAAATTTTTATATAGTAACAGAAGCTGGCATACA  495

seq1  TATATTTTGTGGGTGATATTAAATCAGGACCAGGAATCTAGCTTTGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTGGGTGATATTAAATCAGGACCAGGAATCTAGCTTTGAATT  545

seq1  AGTAAACATTTTTCCAAGAAGAAAACTATTAGATATTTCAAGGTAATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATTTTTCCAAGAAGAAAACTATTAGATATTTCAAGGTAATACA  595

seq1  TTTTACCTTAGTGCCTAAGAGGTAAAGCTGAATTTTATGTTAGTTTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTAGTGCCTAAGAGGTAAAGCTGAATTTTATGTTAGTTTTTGT  645

seq1  GTTATATTTGCACTTACATAATAACTGTGATGAAGATATTATTCGAAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTGCACTTACATAATAACTGTGATGAAGATATTATTCGAAAGT  695

seq1  AAGCATGAAAATAAACGTTTTCATGTGGACTGTATGTGACTCTAAAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAAAATAAACGTTTTCATGTGGACTGTATGTGACTCTAAAGTGA  745

seq1  GACATTTTGTAAATATGTGCAAATTAAAGATATTGTGATTCAATTCATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTGTAAATATGTGCAAATTAAAGATATTGTGATTCAATTCATGA  795

seq1  ATCTGTGGCATTCAATAATTATTCTACCAAAGACTAGAAACAAAACACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGCATTCAATAATTATTCTACCAAAGACTAGAAACAAAACACAA  845

seq1  TACTATTTTATTTTGGACTTGAATACATTAAGAGAGATATTTGAAAGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTATTTTGGACTTGAATACATTAAGAGAGATATTTGAAAGAAT  895

seq1  ACAGGTACAACTGATTCATGGTGCATTGTATTTTTCATTCATTTGTTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACAACTGATTCATGGTGCATTGTATTTTTCATTCATTTGTTTAT  945

seq1  TTTTATGTATAAACATGTGTTCCTGTTATCATTGAATGAATGTGTGTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATAAACATGTGTTCCTGTTATCATTGAATGAATGTGTGTATG  995

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCGTGTCTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCGTGTCTGTG  1045

seq1  ATGTAGAAGCCAGAAGCTAAGTTAATACTCTGACTATTCTGAAAATATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGCCAGAAGCTAAGTTAATACTCTGACTATTCTGAAAATATTT  1095

seq1  TCTGATGTTATTAAAAACAAAGTCCCTCAGTGAACCTGGATTTCATAAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTATTAAAAACAAAGTCCCTCAGTGAACCTGGATTTCATAAAT  1145

seq1  TCATCTAGGCTGTTGTCTAATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  TCATCTAGGCTGTTGTCTAATGAATTC  1172


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