BAC Information

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BAC

Clone NameB6Ng01-188J14
Chromosome13 (Build37)1 (Build37)
Map Location 84,033,098 - 84,033,32094,577,122 - 94,577,884
singlet/doubletsingletsinglet
Overlap gene2810049E08Rik
Upstream geneLOC667018, Mef2c, LOC100043111, LOC623241, LOC432789
Downstream geneLOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J14.bB6Ng01-188J14.g
ACCGA012859GA012860
length439934
definitionB6Ng01-188J14.b B6Ng01-188J14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,033,098 - 84,033,320)(94,577,122 - 94,577,884)
sequence
ctatctcctatcattcgaaagacaggcctcaatcaaaaaacaggaagcac
agttgaatacacacacctccccaaaagatggacaaatatccaaaatgtta
attttcagaatttgtatactgctcaatagtagatttctggttatcatgaa
gagggccctgggtttgatgtttgatctcttgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtatcatggtctcctgtggccatgtctgtgggatcc
tgtctgtgggatcatgtctgtgtcactgtaggtgacaccatccgctaggc
ttgagcctgacctgtggaagagtgaagaaagctagctgacagcaaacaag
gctgtcagcataggagtatctgcctctctctgctctttactatgggtgtg
atgtgtccagatgtctcaacttcctgcttctgactttcc
gaattcacacactacctgtccttcgactttgaaattgaaataaacaaggg
gttcaaaatctagcttcacgggaaccgctcgcaaaaaaagttttaatatc
cttatctcaaaggacaaggaaagacggaggaagataaggagggagggaag
ggggagagtctgtgatcgatttcaggcccagtttggatctgtgatcaatt
tcccggctccttcttggctcttaagcatttacttcccagagtgctacctt
gtgccccaaatggattcttgttgctagatcccagctgggtgagtattcca
cggatgtcttctgcccccccgtgataccccgttttacacaaagaggctgc
agctgcaagtccccccttcagccccagcatcaccatctaaaaatagttcc
cgccggggcatttccattcagaagccaccagaagctgcaccccccccaaa
cccctccccaccctccctccaccccggctcaaagagcatctggtggatcc
tgagtcttcactgacctaatcaaaatgtggaggagagatggaaaccggag
aggacagtgggcggggccagctctgtcaggcagggcaaagggtaggagaa
atacaccttcagctggtgcccataaacaccacttaagcggaaggtcctta
acatgcagacaccgaaactcggatccatcatctttgctgctgtcctcccc
aaggccgggccatcaagctctgagtgtgactgcctttcatcctgaattta
ctccctgacaatactaagattacagcaggctttccccccgaacaaaagag
attgccttgacaaacaaccctttccctccctaccccatgggtatctgcca
cactctaactgggtctcctgggcggaggccatctcttccaaccttctttc
acatgggacaagaacctgtgaataagcaatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84033098_84033320
seq2: B6Ng01-188J14.b_41_262 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACAAGAGATCAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAAGAGATCAAACAT  50

seq1  CAAACCCAGGGCCCTCTTCATGATAACCAGAAATCTACTATTGAGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGGGCCCTCTTCATGATAACCAGAAATCTACTATTGAGCAGTA  100

seq1  TACAAATTCTGAAAATTAACATTTTGGATATTTGTCCATCTTCTGGGGAG  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACAAATTCTGAAAATTAACATTTTGGATATTTGTCCATCTTTTGGGGAG  150

seq1  GTGTGTTTATTCAACTGTGCTTCCTGTTTTTTGATTGAGGGCTGTTTTTC  200
      |||||| ||||||||||||||||||||||||||||||||| |||| ||||
seq2  GTGTGTGTATTCAACTGTGCTTCCTGTTTTTTGATTGAGGCCTGTCTTTC  200

seq1  TGAATGATAGGTGATAGGAATTC  223
       |||||||||| |||||||||||
seq2  -GAATGATAGGAGATAGGAATTC  222

seq1: chr1_94577122_94577884
seq2: B6Ng01-188J14.g_223_998

seq1  TCTGTGATCGATTTCAGGCCCAGTTTGGATCTGTGATCAATTTCCCGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCGATTTCAGGCCCAGTTTGGATCTGTGATCAATTTCCCGGCT  50

seq1  CCTTCTTGGCTCTTAAGCATTTACTTCCCAGAGTGCTACCTTGTGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGCTCTTAAGCATTTACTTCCCAGAGTGCTACCTTGTGCCCCA  100

seq1  AATGGATTCTTGTTGCTAGATCCCAGCTGGGTGAGTATTCCACGGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTCTTGTTGCTAGATCCCAGCTGGGTGAGTATTCCACGGATGTC  150

seq1  TTCTGCCCCCCCGTGATACCCCGTTTTACACAAAGAGGCTGCAGCTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCCCCGTGATACCCCGTTTTACACAAAGAGGCTGCAGCTGCAA  200

seq1  GTCCCCCCTTCAGCCCCAGCATCACCATCTAAAAATAGTTCCCGCCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCTTCAGCCCCAGCATCACCATCTAAAAATAGTTCCCGCCGGGG  250

seq1  CATTTCCATTCAGAAGCCACCAGAAGCTGCACCCCCCCCAAACCCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTCAGAAGCCACCAGAAGCTGCACCCCCCCCAAACCCCTCCC  300

seq1  CACCCTCCCTCCACCCCGGCTCAAAGAGCATCTGGTGGATCCTGAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCTCCACCCCGGCTCAAAGAGCATCTGGTGGATCCTGAGTCTT  350

seq1  CACTGACCTAATCAAAATGTGGAGGAGAGATGGAAACCGGAGAGGACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCTAATCAAAATGTGGAGGAGAGATGGAAACCGGAGAGGACAGT  400

seq1  GGGCGGGGCCAGCTCTGTCAGGCAGGGCAAAGGGTAGGAGAAATACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGCCAGCTCTGTCAGGCAGGGCAAAGGGTAGGAGAAATACACCT  450

seq1  TCAGCTGGTGCCCATAAACACCACTTAAGCGGAAGGTCCTTAACATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGTGCCCATAAACACCACTTAAGCGGAAGGTCCTTAACATGCAG  500

seq1  ACACCGAAACTCGGATCCATCATC-TTGCTGCTGTCCTCCCCAAGGCCGG  549
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACCGAAACTCGGATCCATCATCTTTGCTGCTGTCCTCCCCAAGGCCGG  550

seq1  GCCATCAAGCTCTGAGTGTGACTGCCTTTCAT-CTGAATTTACTCCCTGA  598
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCATCAAGCTCTGAGTGTGACTGCCTTTCATCCTGAATTTACTCCCTGA  600

seq1  CAATAC-AAGATTACAGCAGGCTT--CCCCCGAACAAAAGAGATTG-CTT  644
      |||||| |||||||||||||||||  |||||||||||||||||||| |||
seq2  CAATACTAAGATTACAGCAGGCTTTCCCCCCGAACAAAAGAGATTGCCTT  650

seq1  GACAAACAACC--TTCCCTCCCTACCCCATGGGCAGCTGCCACACTC-CA  691
      |||||||||||  |||||||||||||||||||| | |||||||||||  |
seq2  GACAAACAACCCTTTCCCTCCCTACCCCATGGGTATCTGCCACACTCTAA  700

seq1  CTGGGTCTCCTGGGCGGAGGCCAGCTCGCCCAACCTCC--TCACAT-GGA  738
      ||||||||||||||||||||||| |||  ||||||| |  |||||| |||
seq2  CTGGGTCTCCTGGGCGGAGGCCATCTCTTCCAACCTTCTTTCACATGGGA  750

seq1  CAAGACCTTGTGAAT-AGCAATGGCA  763
      ||||| | ||||||| ||||||||||
seq2  CAAGAACCTGTGAATAAGCAATGGCA  776