BAC Information

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BAC

Clone NameB6Ng01-188J20
Chromosome1 (Build37)
Map Location 94,576,966 - 94,742,272
singlet/doubletdoublet
Overlap geneGpc1
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneAnkmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J20.bB6Ng01-188J20.g
ACCGA012871GA012872
length7051,112
definitionB6Ng01-188J20.b B6Ng01-188J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,741,574 - 94,742,272)(94,576,966 - 94,578,070)
sequence
gaattctgacatgctgtgagatggctgtcatgctcaatgaaagaagccaa
gtgaggtccttaggactgacagaaccaaaagagacagagagtgaaactgt
gcatgtcagaagctgaggagagaaatggagtgtgtgtatgtgtgtatgtg
tattagttttgactttcaagttgacataatctagactcatctggaaagag
agccctagtgagttcttatctagatcatggtctcctgtggccatgtctgt
gggatcctgtctgtgggatcatgtctgtgtcactgtaggtgacaccatcc
gctaggcttgagcctgacctgtggaagagtgaagaaagctagctgacagc
aaacaaggctgtcagcataggagtatctgcctctctctgctctttactat
gggtgtgatgtgtccagatgtctcaacttcctgcttctgacttccctgga
acgatggacatgtaagtcaaacaaacctgatccttccctaagttgctttg
agtcagggtcttttacgaagcaacaaaaataaaactataactgggatcag
tgtttaatggggacagaggttcaggtggtgacaacggccattctgagagc
ccagtcattgtctacccactggggtggccttgctttatcctggctgtgtc
ttgcgttactctgtgacggtgggctggttattcttatgtctactagaccc
tgcca
gaattccagactacagcccatgagtaagtctaggtgagcctgtggggtcc
acagtctagagtctgatatttagggaaggcagagaaccccaatctaggat
tgctcaactgggatccaaaaatctcactcctgtttgggaagcaggcagtg
tttgtatctgtgatcgatttcaggcccagtttggatctgtgatcaatttc
ccggctccttcttggctcttaagcatttacttcccagagtgctaccttgt
gccccaaatggattcttgttgctagatcccagctgggtgagtattccacg
gatgtcttctgcccccccgtgataccccgttttacacaaagaggctgcag
ctgcaagtccccccttcagccccagcatcaccatctaaaaatagttcccg
ccggggcatttccattcagaagccaccagaagctgcaccccccccaaacc
cctccccaccctccctccaccccggctcaaagagcatctggtggatcctg
agtcttcactgacctaatcaaaatgtggaggagagatggaaaccggagag
gacagtgggcggggccagctctgtcaggcagggcaaagggtaggagaaat
acaccttcagctggtgcccataaacaccacttaagcggaaggtccttaac
atgcagacaccgaaaactcggatccatcatcttgctgctgtcctccccaa
ggccgggccatcaagctctgagtgtgactgccttttcatctgaatttact
ccctgacaatacaagattacagcaggcttcccccgaacaaaagagattgc
ttgacaaacaaccttccctccctaccccatgggcagctgccacactccac
tgggtctcctgggcggaggccagctcgcccaacctcctcacatggacaag
accttgtgaatagcattggcagtgacttgttgcatgccatcagatgggca
gtggagtttcctcttcctcctcccttcttgactgggggcatttcctctag
gtgccacccctgccagggtactgagcaagggtgtttggtcacatgctagg
ttcttacagtgggctacgggttcttacactggacagtagtactcatcttg
gtctgttttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94741574_94742272
seq2: B6Ng01-188J20.b_49_746 (reverse)

seq1  GTCTAGTAGACATAAAACTAGCCAGTGCACCCCCACAAAGAACTGCAAGA  50
      ||||||||||||||| | || ||||  ||||  |||| || |  ||||||
seq2  GTCTAGTAGACATAAGAATAACCAGCCCACCGTCACAGAGTAACGCAAGA  50

seq1  CACAGCCATGAAAAAGC-AGGCCACCCCAGTGGGTAGACAATGACTGGCT  99
      |||||||| || ||||| ||||||||||||||||||||||||||||||  
seq2  CACAGCCAGGATAAAGCAAGGCCACCCCAGTGGGTAGACAATGACTGGGC  100

seq1  TCTCAGAATGGTGTGTTGTCACCAACTGAACCTCTGTCCCCATTAAACAC  149
      |||||||||||   |||||||||| |||||||||||||||||||||||||
seq2  TCTCAGAATGG-CCGTTGTCACCACCTGAACCTCTGTCCCCATTAAACAC  149

seq1  TGATCCCTGTTCTAGTTTTATTTTTGTTGCTGTTGTAAAAGACCCTGACT  199
      ||||||| ||| ||||||||||||||||||| | ||||||||||||||||
seq2  TGATCCCAGTTATAGTTTTATTTTTGTTGCT-TCGTAAAAGACCCTGACT  198

seq1  CAAAGCAACTTAGGGAAGGATCAGGTTTGTTTGACTTACATGTCCATCGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACTTAGGGAAGGATCAGGTTTGTTTGACTTACATGTCCATCGT  248

seq1  TACAGGGAAGTCAGAAGCAGGAAGTTGAGACATCTGGACACATCACACCC  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAAGTCAGAAGCAGGAAGTTGAGACATCTGGACACATCACACCC  298

seq1  ATAGTAAAGAGCAGAGAGAGGCAGATACTCCTATGCTGACAGCCTTGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAGAGCAGAGAGAGGCAGATACTCCTATGCTGACAGCCTTGTTT  348

seq1  GCTGTCAGCTAGCTTTCTTCACTCTTCCACAGGTCAGGCTCAAGCCTAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGCTAGCTTTCTTCACTCTTCCACAGGTCAGGCTCAAGCCTAGC  398

seq1  GGATGGTGTCACCTACAGTGACACAGACATGATCCCACAGACAGGATCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGTCACCTACAGTGACACAGACATGATCCCACAGACAGGATCCC  448

seq1  ACAGACATGGCCACAGGAGACCATGATCTAGATAAGAACTCACTAGGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGGCCACAGGAGACCATGATCTAGATAAGAACTCACTAGGGCT  498

seq1  CTCTTTCCAGATGAGTCTAGATTATGTCAACTTGAAAGTCAAAACTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGATGAGTCTAGATTATGTCAACTTGAAAGTCAAAACTAATA  548

seq1  CACATACACACATACACACACTCCATTTCTCTCCTCAGCTTCTGACATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACATACACACACTCCATTTCTCTCCTCAGCTTCTGACATGC  598

seq1  ACAGTTTCACTCTCTGTCTCTTTTGGTTCTGTCAGTCCTAAGGACCTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCACTCTCTGTCTCTTTTGGTTCTGTCAGTCCTAAGGACCTCAC  648

seq1  TTGGCTTCTTTCATTGAGCATGACAGCCATCTCACAGCATGTCAGAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCTTTCATTGAGCATGACAGCCATCTCACAGCATGTCAGAATTC  698

seq1: chr1_94576966_94578070
seq2: B6Ng01-188J20.g_68_1179

seq1  GAATTCCAGACTACAGCCCATGAGTAAGTCTAGGTGAGCCTGTGGGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTACAGCCCATGAGTAAGTCTAGGTGAGCCTGTGGGGTCC  50

seq1  ACAGTCTAGAGTCTGATATTTAGGGAAGGCAGAGAACCCCAATCTAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTAGAGTCTGATATTTAGGGAAGGCAGAGAACCCCAATCTAGGAT  100

seq1  TGCTCAACTGGGATCCAAAAATCTCACTCCTGTTTGGGAAGCAGGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACTGGGATCCAAAAATCTCACTCCTGTTTGGGAAGCAGGCAGTG  150

seq1  TTTGTATCTGTGATCGATTTCAGGCCCAGTTTGGATCTGTGATCAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTGTGATCGATTTCAGGCCCAGTTTGGATCTGTGATCAATTTC  200

seq1  CCGGCTCCTTCTTGGCTCTTAAGCATTTACTTCCCAGAGTGCTACCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCCTTCTTGGCTCTTAAGCATTTACTTCCCAGAGTGCTACCTTGT  250

seq1  GCCCCAAATGGATTCTTGTTGCTAGATCCCAGCTGGGTGAGTATTCCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAATGGATTCTTGTTGCTAGATCCCAGCTGGGTGAGTATTCCACG  300

seq1  GATGTCTTCTGCCCCCCCGTGATACCCCGTTTTACACAAAGAGGCTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTCTGCCCCCCCGTGATACCCCGTTTTACACAAAGAGGCTGCAG  350

seq1  CTGCAAGTCCCCCCTTCAGCCCCAGCATCACCATCTAAAAATAGTTCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTCCCCCCTTCAGCCCCAGCATCACCATCTAAAAATAGTTCCCG  400

seq1  CCGGGGCATTTCCATTCAGAAGCCACCAGAAGCTGCACCCCCCCCAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCATTTCCATTCAGAAGCCACCAGAAGCTGCACCCCCCCCAAACC  450

seq1  CCTCCCCACCCTCCCTCCACCCCGGCTCAAAGAGCATCTGGTGGATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCTCCCTCCACCCCGGCTCAAAGAGCATCTGGTGGATCCTG  500

seq1  AGTCTTCACTGACCTAATCAAAATGTGGAGGAGAGATGGAAACCGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCACTGACCTAATCAAAATGTGGAGGAGAGATGGAAACCGGAGAG  550

seq1  GACAGTGGGCGGGGCCAGCTCTGTCAGGCAGGGCAAAGGGTAGGAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGCGGGGCCAGCTCTGTCAGGCAGGGCAAAGGGTAGGAGAAAT  600

seq1  ACACCTTCAGCTGGTGCCCATAAACACCACTTAAGCGGAAGGTCCTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCAGCTGGTGCCCATAAACACCACTTAAGCGGAAGGTCCTTAAC  650

seq1  ATGCAGACACCG-AAACTCGGATCCATCATCTTGCTGCTGTCCTCCCCAA  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACACCGAAAACTCGGATCCATCATCTTGCTGCTGTCCTCCCCAA  700

seq1  GGCCGGGCCATCAAGCTCTGAGTGTGACTGCC-TTTCATCTGAATTTACT  748
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCCGGGCCATCAAGCTCTGAGTGTGACTGCCTTTTCATCTGAATTTACT  750

seq1  CCCTGACAATACAAGATTACAGCAGGCTTCCCCCGAACAAAAGAGATTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAATACAAGATTACAGCAGGCTTCCCCCGAACAAAAGAGATTGC  800

seq1  TTGACAAACAACCTTCCCTCCCTACCCCATGGGCAGCTGCCACACTCCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACAACCTTCCCTCCCTACCCCATGGGCAGCTGCCACACTCCAC  850

seq1  TGGGTCTCCTGGGCGGAGGCCAGCTCGCCCAACCTCCTCACATGGACAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCTGGGCGGAGGCCAGCTCGCCCAACCTCCTCACATGGACAAG  900

seq1  ACCTTGTGAATAGCAATGGCAGTGAC-TGTTGCATGCCATCAGAT-GGCA  946
      ||||||||||||||| |||||||||| |||||||||||||||||| ||||
seq2  ACCTTGTGAATAGCATTGGCAGTGACTTGTTGCATGCCATCAGATGGGCA  950

seq1  GT-GAGTTTCCTCTTCCTCCTCCCTTCTTGACTGGGGGCATTTCCTCTAG  995
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTTCCTCTTCCTCCTCCCTTCTTGACTGGGGGCATTTCCTCTAG  1000

seq1  GTGC--ACCCTGGCAGGGTACTGAGCAAGGGTGTTTTGGTCACATGCAAG  1043
      ||||   ||||| |||||||||||||||||||| ||||||||||||| ||
seq2  GTGCCACCCCTGCCAGGGTACTGAGCAAGGGTG-TTTGGTCACATGCTAG  1049

seq1  G-TCCTACAGTGGGCTACAGTGTTC-TACACTGGCCAGTAGTACTCATCT  1091
      | || ||||||||||||| | |||| |||||||| |||||||||||||||
seq2  GTTCTTACAGTGGGCTAC-GGGTTCTTACACTGGACAGTAGTACTCATCT  1098

seq1  TGGCCTGTTTTGGA  1105
      ||| ||||||||||
seq2  TGGTCTGTTTTGGA  1112