BAC Information

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BAC

Clone NameB6Ng01-191C21
Chromosome1 (Build37)
Map Location 42,161,531 - 42,323,941
singlet/doubletdoublet
Overlap geneLOC666582
Upstream geneLOC100041441, LOC383634
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191C21.bB6Ng01-191C21.g
ACCGA014742GA014743
length1,1141,105
definitionB6Ng01-191C21.b B6Ng01-191C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,161,531 - 42,162,637)(42,322,841 - 42,323,941)
sequence
gaattcaatccctagaacctacttaaaaaagataaagtaggtgatagaca
ctgcgagtttcagtgctgggtcgacagagaaaggccagtccatggactat
tcatagagctctgggtccgagtagcatacagtctcttggagaaacaaaga
tgagcaacaccagaggaacagcccacagttgacctctgacctaaacacac
ccacccatccaacccacccccacacacaaacacacaagtacacacataca
cacaaacatacagaaactgtaatgttttcaaggtcatcatttatagactt
gcttttccataaaaaataaatgaggaactacaacctggagcagtggttgg
tccttcaaggtgatttttcccagtacagaaaggtggatctcccagtggtt
ctcttaatagggtttgagtgccaaacaatgaaattcaatgaaccttgttg
ccagaaccacagatctggtaaacataagatttgccttttttctaactttc
ttctatatactcctggggtgtctcttcacaggccaatttcctttgggata
aactgccaattgtattgccaaataaaactacaaaatctttattaattgta
catctagttgtacatttaatttttgccaaaacagtaaaggggtaggtatt
gttccagaaattcatttaaattgtctgaagaggtcatgagcttcccttcc
agttgttttttttttttttttaattattagtcattttattcatttacatt
tcaaatgatatcccctttcctggttaccactccacaaccccacatcccat
ctggcctctgccccctcaactttgcctctgtgagggtgctcctccaccca
ctcacctactcctaccacaatcccctctttgctggggcatcaaacctcta
cagccctcccctcgcattgatgccagataaggccatcctctgctacatat
gtggctggaaccatgggtccctccattcgttctctttagttggtggttta
gtcctctgggaacctctgtgggaagtaagggtggttgaatatgggtgtct
ttcctatggggattgcaattcctttctgccttctcagtcctttccctaag
ctctttcattgggg
gaattcctgagagagacagtggctctatttgggcccccattgagcctggt
acataaactcgaccatggatttagacaccagacattggcaatacatttgg
tcccactttcgtgcactaaatagccctttcagagaaggggaacttgctgg
aagacatccatacagcagagacatctgattctctggacttaaagttacat
tacatggagctattgagaagtttaacttgtcttatgcaatcaatttttat
tcatgtttttcttttctttctgagattggcatattcactctttaactttt
ttttttttttttttttttttttgagtcttctagcaaagacagggaggtga
gaacctggaatctttcagatgtacctgaccttcaaattcgcagtcatggt
agtgcttgtccataagatgaaaatataattgactttttgtgttttagttg
cagcgcgtcgaggtttcttcccaagctcctcgtcagtcatgagtgaagac
agggagaaaaattaattaagtgtccaatcaagtttcgagctgtcatgcct
gataatttaaacagcctttctcagttggtgctcattcttacatttggata
aaatggccagactcatgtttccctcctatgctctgtctgctctttacgat
agtgttctgaagggtggggaacaaatgtgtgtgcggttagggatgttggt
ggctacaggaaccgatagggattccaccattctcttagtgccaccctcag
atcttgccactcaatggtatttgtcaacaaacaaacaaacaacaaaaaca
aaaaacccaacccaaccaaacaaatcaaaaacccagtacctatctctgca
ccacgcaccatgtacgtacttggtactgagaaggccagaagaaggtattg
gattccctaaggactgggattataaacaggctgtacaccaagccaccatg
ttggatgaacggagattgacccattgaacccaagttccggtgggagaagc
agcccagcagctagggcgcttaatctcctgagcctccagctgtctcctat
cctctatgtaacctaaattgcctagctcatagatgactccaaatgagtcc
attgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42161531_42162637
seq2: B6Ng01-191C21.b_46_1159

seq1  GAATTCAATCCCTAGAACCTACTTAAAAAAGATAAAGTAGGTGATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTAGAACCTACTTAAAAAAGATAAAGTAGGTGATAGACA  50

seq1  CTGCGAGTTTCAGTGCTGGGTCGACAGAGAAAGGCCAGTCCATGGACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGTTTCAGTGCTGGGTCGACAGAGAAAGGCCAGTCCATGGACTAT  100

seq1  TCATAGAGCTCTGGGTCCGAGTAGCATACAGTCTCTTGGAGAAACAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGCTCTGGGTCCGAGTAGCATACAGTCTCTTGGAGAAACAAAGA  150

seq1  TGAGCAACACCAGAGGAACAGCCCACAGTTGACCTCTGACCTAAACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACACCAGAGGAACAGCCCACAGTTGACCTCTGACCTAAACACAC  200

seq1  CCACCCATCCAACCCACCCCCACACACAAACACACAAGTACACACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATCCAACCCACCCCCACACACAAACACACAAGTACACACATACA  250

seq1  CACAAACATACAGAAACTGTAATGTTTTCAAGGTCATCATTTATAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATACAGAAACTGTAATGTTTTCAAGGTCATCATTTATAGACTT  300

seq1  GCTTTTCCATAAAAAATAAATGAGGAACTACAACCTGGAGCAGTGGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCATAAAAAATAAATGAGGAACTACAACCTGGAGCAGTGGTTGG  350

seq1  TCCTTCAAGGTGATTTTTCCCAGTACAGAAAGGTGGATCTCCCAGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGGTGATTTTTCCCAGTACAGAAAGGTGGATCTCCCAGTGGTT  400

seq1  CTCTTAATAGGGTTTGAGTGCCAAACAATGAAATTCAATGAACCTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATAGGGTTTGAGTGCCAAACAATGAAATTCAATGAACCTTGTTG  450

seq1  CCAGAACCACAGATCTGGTAAACATAAGATTTGCCTTTTTTCTAACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCACAGATCTGGTAAACATAAGATTTGCCTTTTTTCTAACTTTC  500

seq1  TTCTATATACTCCTGGGGTGTCTCTTCACAGGCCAATTTCCTTTGGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATACTCCTGGGGTGTCTCTTCACAGGCCAATTTCCTTTGGGATA  550

seq1  AACTGCCAATTGTATTGCCAAATAAAACTACAAAATCTTTATTAATTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAATTGTATTGCCAAATAAAACTACAAAATCTTTATTAATTGTA  600

seq1  CATCTAGTTGTACATTTAATTTTTGCCAAAACAGTAAAGGGGTAGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTGTACATTTAATTTTTGCCAAAACAGTAAAGGGGTAGGTATT  650

seq1  GTTCCAGAAATTCATTTAAATTGTCTGAAGAGGTCATGAGCTTCCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAAATTCATTTAAATTGTCTGAAGAGGTCATGAGCTTCCCTTCC  700

seq1  AGTTGTTTTTTTTTTTTTTTTAATTATTAGTCATTTTATTCATTTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTTTTTTTTTTTTTTAATTATTAGTCATTTTATTCATTTACATT  750

seq1  TCAAATGATATCCCCTTTCCTGGTTACCACTCCACAACCCCACATCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGATATCCCCTTTCCTGGTTACCACTCCACAACCCCACATCCCAT  800

seq1  CTGGCCTCTGCCCCCTCAACTTTGCCTCTGTGAGGGTGCTCCTCCACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGCCCCCTCAACTTTGCCTCTGTGAGGGTGCTCCTCCACCCA  850

seq1  CTCACCTACTCCTACCACAATCCCCTCTTTGCTGGGGCATCAAACCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTACTCCTACCACAATCCCCTCTTTGCTGGGGCATCAAACCTCTA  900

seq1  CAGCCCTCCCCTCGCATTGATGCCAGATAAGGCCATCCTCTGCTACATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCCCCTCGCATTGATGCCAGATAAGGCCATCCTCTGCTACATAT  950

seq1  GTGGCTGGAACCATGGGTCCCTCCATTCGTTCTCTTTAGTTGGTGGTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGAACCATGGGTCCCTCCATTCGTTCTCTTTAGTTGGTGGTTTA  1000

seq1  GT-CTCTGGGAA-CTCTGTGG--AGTAGGGTTGGTTG-ATATTGGTGTTC  1045
      || ||||||||| ||||||||  |||| || |||||| |||| |||||  
seq2  GTCCTCTGGGAACCTCTGTGGGAAGTAAGGGTGGTTGAATATGGGTGTCT  1050

seq1  TTCCTAT-GGGATTGCAATCCCTTTCTGCTTCTTCAGT-CTTTCCCCTAG  1093
      ||||||| ||||||||||| ||||||||| |  ||||| |||||||  ||
seq2  TTCCTATGGGGATTGCAATTCCTTTCTGCCTTCTCAGTCCTTTCCCTAAG  1100

seq1  CTCTTTCATTGGGG  1107
      ||||||||||||||
seq2  CTCTTTCATTGGGG  1114

seq1: chr1_42322841_42323941
seq2: B6Ng01-191C21.g_65_1169 (reverse)

seq1  ACAATGACCTTCATTTGGAGTCATCTTATGA-CTA-GCCATTTAGGTTAC  48
      ||||||  | ||||||||||||||| ||||| ||| || |||||||||||
seq2  ACAATGGAC-TCATTTGGAGTCATC-TATGAGCTAGGCAATTTAGGTTAC  48

seq1  ATAGA-GATGGGGGACAGCTGGA-GCTCA-GAGATTAAGCGCCCTAGCTG  95
      ||||| ||| || |||||||||| ||||| ||||||||||||||||||||
seq2  ATAGAGGATAGGAGACAGCTGGAGGCTCAGGAGATTAAGCGCCCTAGCTG  98

seq1  CT-GGCTGC-TCTCCCA-CGGGACTTGGGTTCAATGGGTTCAATCTCCG-  141
      || |||||| ||||||| ||| |||||||||||||||| |||||||||| 
seq2  CTGGGCTGCTTCTCCCACCGGAACTTGGGTTCAATGGG-TCAATCTCCGT  147

seq1  TCATCC-ACATGGTGGCTT-GTGTACAGCCTGTTTATAATCCCAGTCC-T  188
      |||||| |||||||||||| |||||||||||||||||||||||||||| |
seq2  TCATCCAACATGGTGGCTTGGTGTACAGCCTGTTTATAATCCCAGTCCTT  197

seq1  AGGGAATCCAATACCCTCTTCTGGCCTTCTCAGTTACCAAGTACGTACAT  238
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AGGGAATCCAATACCTTCTTCTGGCCTTCTCAG-TACCAAGTACGTACAT  246

seq1  GGTGCGTGGTGCAGAGATAGGTACTGGGTTTTTGATTTGTTTTGGTTTGG  288
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  GGTGCGTGGTGCAGAGATAGGTACTGGGTTTTTGATTTG-TTTGGTTGGG  295

seq1  TTTGGTTTTTTGTTTTTTGTTTGTTTGTTTGTTTGTTTGACAAATACCAT  338
      || ||||||||||||||   ||||||||||||||| ||||||||||||||
seq2  TTGGGTTTTTTGTTTTT--GTTGTTTGTTTGTTTG-TTGACAAATACCAT  342

seq1  TGAGTGGCAAGATCTGAGGGTGGCACTAAGAGAATGGTGGAATCCCTATC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCAAGATCTGAGGGTGGCACTAAGAGAATGGTGGAATCCCTATC  392

seq1  GGTTCCTGTAGCCACCAACATCCCTAACCGCACACACATTTGTTCCCCAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGTAGCCACCAACATCCCTAACCGCACACACATTTGTTCCCCAC  442

seq1  CCTTCAGAACACTATCGTAAAGAGCAGACAGAGCATAGGAGGGAAACATG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAACACTATCGTAAAGAGCAGACAGAGCATAGGAGGGAAACATG  492

seq1  AGTCTGGCCATTTTATCCAAATGTAAGAATGAGCACCAACTGAGAAAGGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCCATTTTATCCAAATGTAAGAATGAGCACCAACTGAGAAAGGC  542

seq1  TGTTTAAATTATCAGGCATGACAGCTCGAAACTTGATTGGACACTTAATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTATCAGGCATGACAGCTCGAAACTTGATTGGACACTTAATT  592

seq1  AATTTTTCTCCCTGTCTTCACTCATGACTGACGAGGAGCTTGGGAAGAAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTCCCTGTCTTCACTCATGACTGACGAGGAGCTTGGGAAGAAA  642

seq1  CCTCGACGCGCTGCAACTAAAACACAAAAAGTCAATTATATTTTCATCTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGACGCGCTGCAACTAAAACACAAAAAGTCAATTATATTTTCATCTT  692

seq1  ATGGACAAGCACTACCATGACTGCGAATTTGAAGGTCAGGTACATCTGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAGCACTACCATGACTGCGAATTTGAAGGTCAGGTACATCTGAA  742

seq1  AGATTCCAGGTTCTCACCTCCCTGTCTTTGCTAGAAGACTCAAAAAAAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGGTTCTCACCTCCCTGTCTTTGCTAGAAGACTCAAAAAAAAA  792

seq1  AAAAAAAAAAAAAAAAAGTTAAAGAGTGAATATGCCAATCTCAGAAAGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGTTAAAGAGTGAATATGCCAATCTCAGAAAGAA  842

seq1  AAGAAAAACATGAATAAAAATTGATTGCATAAGACAAGTTAAACTTCTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACATGAATAAAAATTGATTGCATAAGACAAGTTAAACTTCTCA  892

seq1  ATAGCTCCATGTAATGTAACTTTAAGTCCAGAGAATCAGATGTCTCTGCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCATGTAATGTAACTTTAAGTCCAGAGAATCAGATGTCTCTGCT  942

seq1  GTATGGATGTCTTCCAGCAAGTTCCCCTTCTCTGAAAGGGCTATTTAGTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATGTCTTCCAGCAAGTTCCCCTTCTCTGAAAGGGCTATTTAGTG  992

seq1  CACGAAAGTGGGACCAAATGTATTGCCAATGTCTGGTGTCTAAATCCATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAGTGGGACCAAATGTATTGCCAATGTCTGGTGTCTAAATCCATG  1042

seq1  GTCGAGTTTATGTACCAGGCTCAATGGGGGCCCAAATAGAGCCACTGTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGTTTATGTACCAGGCTCAATGGGGGCCCAAATAGAGCCACTGTCT  1092

seq1  CTCTCAGGAATTC  1101
      |||||||||||||
seq2  CTCTCAGGAATTC  1105