BAC Information

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BAC

Clone NameB6Ng01-194L07
Chromosome1 (Build37)
Map Location 89,798,427 - 89,799,539
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194L07.bB6Ng01-194L07.g
ACCGA017328GA017329
length1,1861,130
definitionB6Ng01-194L07.b B6Ng01-194L07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaacagctattgaacactttcagtaaaatatctggatataaaat
taacccagaaaatcagtagccttcctatatatagatgacaaataggctag
aaataatcagggaaacatcatctttcacgatagcctcaaacaatataaaa
tctcttggtaaatctaatagagggaattctaaaagaggttacctcttaaa
gacataactaatcaagcaagtgaaagccttgtaaaataaaaacttcaagt
ctttgaagaaagaaatgtatgaagatatcagaagatggaacagtctccca
agctcatagatctttaggattaatctagtaaaaatggctatctttgcaga
agcaatctacagagtcaatgtgattgccatcaaaattccaacacagtagt
tcacacaccctgaaaggacaattctcaagttctaattgaaacctcaaaaa
aatctcaggacagctaaaacaatcctgaagaataatagagctaccggagt
tctcaccatcctgatctcaaattctactataatgctatagtaataaaaac
agcatgtttctggcattaaaaacagacatatttatactacgcttgggcat
atacccaaagaacacatcccaccacagtgacacttttccaccatattcaa
tactccattcataatagtcaagaaattggaaacaacctagatgtccctca
aaagaagaagagataaagaaaatgtgttacatttacacaatcgattctta
ctcaggtcttttttttttttttttaatgacatctgtaggcaaatgtatgg
aactaggaaaaatcatcctgggtgaagtaacccaggctcagaaagataaa
tatggtatggatttgcttatatttggatagtgagaaaggctgggctgatt
ccatgacaggcttcaattggcagttaggagactaggcctaagaactggaa
agtccaggcaagtcagttaccagaaaaccaccacccaccaacaagcccca
ggcttcagcagctagtgagaaactgccctgatctctctcttacctatgcc
tcatatagagctagaacaccctatacttaagtgcccccccgctttgagat
tccatatgaagccccctcatgctgctactccattagatctagctaattga
accactaatttttgactccatcgagcctcccattag
gaattctctgactgcatgtttggggtaaggtgttctcttggtctcttctg
aaggcttcctatggagagggttaggtagtcttcccccccctcactcccca
aagctgtacttttttttttttttttataagatgatgataattttttttta
aagatttatttatttatttattatatgtaagtacactgtagctatcttca
gacactccagaagagggcgtcagatcttgttacagatggttgtgagccac
catgtggttgctgggatttgaactccggaccttcggaagagcagtcgggt
gcacttacccactgagccatctcaccagcccaaagctgtacttttgagac
ctcagcaactcagagaattcaggcagctacacaatagaatggcatccaag
aggctttctgaaaatggttgtctgctctgaccacaggagacccttcccat
tttatcagctagagcaggctactggtgtagttgccacctggcctcttaca
ttttatgttcctaagctttgagtatgaactgtggttgtgttgttatctct
gtggtacatctctgtttccatgctgaaacataaaaggccttgaaaactca
ctatgcttcccagactaagacatgtgggtatcattgaaggaagctcttgg
gatagtcttccccttcctagtctcatttctgttttgccagtggtctgact
tggtgtttttcatgctctgcttgctgttctctatctctacttacatatgt
aggtagagcactaggtagtgctgcctagctggttcaaggattgaatcagc
agtattctacttatatagctctgtttttccaagattgattacggtgcatg
cattgacctgtaaatagctttgggttaaagaccacagagctggttttcat
agctttctgtaatgcttccaggataatatggaaagctccaacgcactgac
agaagtagtttccctagattttactacttatgaactacagttgccatggg
acgtgcttaatcttattgttctgggcacatagtaaacgtcttctagccat
gtggtttcctaaggatgaaattagcacgtctgcattatcttcacgctaga
ccaaaaccctgtcaccatggtttcacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89798427_89799539
seq2: B6Ng01-194L07.g_67_1196

seq1  GAATTCTCTGACTGCATGTTTGGGGTAAGGTGTTCTCTTGGTCTCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACTGCATGTTTGGGGTAAGGTGTTCTCTTGGTCTCTTCTG  50

seq1  AAGGCTTCCTATGGAGAGGGTTAGGTAGTCTTCCCCCCCCTCACTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCCTATGGAGAGGGTTAGGTAGTCTTCCCCCCCCTCACTCCCCA  100

seq1  AAGCTGTACTTTTTTTTTTTTTTTTATAAGATGATGATAATTTTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTACTTTTTTTTTTTTTTTTATAAGATGATGATAATTTTTTTTTA  150

seq1  AAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTATCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTATCTTCA  200

seq1  GACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCAC  250

seq1  CATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGT  300

seq1  GCACTTACCCACTGAGCCATCTCACCAGCCCAAAGCTGTACTTTTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACCCACTGAGCCATCTCACCAGCCCAAAGCTGTACTTTTGAGAC  350

seq1  CTCAGCAACTCAGAGAATTCAGGCAGCTACACAATAGAATGGCATCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAACTCAGAGAATTCAGGCAGCTACACAATAGAATGGCATCCAAG  400

seq1  AGGCTTTCTGAAAATGGTTGTCTGCTCTGACCACAGGAGACCCTTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTGAAAATGGTTGTCTGCTCTGACCACAGGAGACCCTTCCCAT  450

seq1  TTTATCAGCTAGAGCAGGCTACTGGTGTAGTTGCCACCTGGCCTCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGCTAGAGCAGGCTACTGGTGTAGTTGCCACCTGGCCTCTTACA  500

seq1  TTTTATGTTCCTAAGCTTTGAGTATGAACTGTGGTTGTGTTGTTATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTCCTAAGCTTTGAGTATGAACTGTGGTTGTGTTGTTATCTCT  550

seq1  GTGGTACATCTCTGTTTCCATGCTGAAACATAAAAGGCCTTGAAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACATCTCTGTTTCCATGCTGAAACATAAAAGGCCTTGAAAACTCA  600

seq1  CTATGCTTCCCAGACTAAGACATGTGGGTATCATTGAAGGAAGCTCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCCCAGACTAAGACATGTGGGTATCATTGAAGGAAGCTCTTGG  650

seq1  GATAGTCTTCCCCTTCCTAGTCTCATTTCTGTTTTGCCAGTGGTCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTCCCCTTCCTAGTCTCATTTCTGTTTTGCCAGTGGTCTGACT  700

seq1  TGGTGTTTTTCATGCTCTGCTTGCTGTTCTCTATCTCTACTTACATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTTCATGCTCTGCTTGCTGTTCTCTATCTCTACTTACATATGT  750

seq1  AGGTAGAGCACTAGGTAGTGCTGCCTAGCTGGTTCAAGGATTGAATCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGCACTAGGTAGTGCTGCCTAGCTGGTTCAAGGATTGAATCAGC  800

seq1  AGTATTCTACTTATATAGCTCTGTTTTTCCAAGATTGATTACGGTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTACTTATATAGCTCTGTTTTTCCAAGATTGATTACGGTGCATG  850

seq1  CATTGACCTGTAAATAGCTT--GGGTAAAGACCACAGAGCTGGTTTTCAT  898
      ||||||||||||||||||||  || |||||||||||||||||||||||||
seq2  CATTGACCTGTAAATAGCTTTGGGTTAAAGACCACAGAGCTGGTTTTCAT  900

seq1  AGC-TTCTGTAATGC-TCCAGGAT-ATATGGAAAGCTCCAACGCACTGAC  945
      ||| ||||||||||| |||||||| |||||||||||||||||||||||||
seq2  AGCTTTCTGTAATGCTTCCAGGATAATATGGAAAGCTCCAACGCACTGAC  950

seq1  AG-AGTAGGTTTCCCTAGATTTTACTAC-TATGAACTACAG-TGCCAT-G  991
      || |||| |||||||||||||||||||| |||||||||||| |||||| |
seq2  AGAAGTA-GTTTCCCTAGATTTTACTACTTATGAACTACAGTTGCCATGG  999

seq1  GACGTGCTT-ATCTTTATGTTCCTGGCACAAAGGTAGACGTC-TCTAG-C  1038
      ||||||||| |||||  |||||  |||||| | ||| ||||| ||||| |
seq2  GACGTGCTTAATCTTATTGTTCTGGGCACATA-GTAAACGTCTTCTAGCC  1048

seq1  ATGTG--TTTCTCAGGATAGAATTAGCAGGTCTGCA-TATCTTCA-GCTA  1084
      |||||  || || |||||  |||||||| ||||||| |||||||| ||||
seq2  ATGTGGTTTCCTAAGGATGAAATTAGCACGTCTGCATTATCTTCACGCTA  1098

seq1  GACC-AAACACTGTCACATTG--CTCACAAAG  1113
      |||| |||| |||||||  ||   ||||||||
seq2  GACCAAAACCCTGTCACCATGGTTTCACAAAG  1130