BAC Information

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BAC

Clone NameB6Ng01-196L06
Chromosome1 (Build37)11 (Build37)
Map Location 137,249,873 - 137,250,04857,239,187 - 57,240,212
singlet/doubletsingletsinglet
Overlap geneLmod1
Upstream geneTmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a
Downstream geneTmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196L06.bB6Ng01-196L06.g
ACCGA018769GA018770
length2251,003
definitionB6Ng01-196L06.b B6Ng01-196L06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(137,249,873 - 137,250,048)(57,239,187 - 57,240,212)
sequence
aatcttaaaaggcacttatagggctggtgataaaaggagggggtgggtaa
gaatacccgactgctcttccaaaggtctggaattaaaatcccagcaacca
catggtggctcacaaccatctgtaatgagacctgatgtcctcttctggtg
tgtctgaagttagctactgtgtacttacatataataaataaataaatctt
taaaaaaaaatagattttaaaaaat
gaattccttcctctggaagtgatgggctgtcttctgaaactaaaaaaaaa
aaaaaaaaaaaaaaaaaaaactcttcgtctctaggttttatcacagcaac
agaaatgaaactagaccagtcgctgaggaacaaccaccaagattgacctc
tgacctccacacacatccttgtgcaagacccatacgtgcaggaacatgca
cacagaaaatgatgggcccccaattgtctgctctcatattggagagcaag
cccataagtagacaggggagccaggagatgagcaaaaccaagcagtcctc
atagcaccttgccggctctaacctcctcccatcccgggacttcaagtgtg
tctgtgtcttcattattcggagttctctgagtcctgaataagccactgaa
cctgtgtgaaaagtcatgggacatcttcagcaatggcaacagcgctgcct
ccccactgttatttctcccaggcttattttgtccttgccttgctgagcag
ctgcaagggaggcatcatgggaccttcacgagaaacgaggggaagtgaca
gatgtgcggatggagaccgtccacagctgcagggcagctaaggtttatgg
gaagtgttaaatcactgaagtcttccgggttctttaataacatatattga
tttgcttgtgcttccctgagggaggaaggatttgactaacagccagtgtt
cccctgagagcaagcaccagagggtctgactaaacacagaagagtgagaa
gctaagaaaagaaaaaaaaagaaggtagatgatggtctgtgaaattggaa
aataatatgtacttcacaggggctgacacagctcaaaacagaggtaaaga
agagatcaatcgcctcctctctgcactttaaaagcactgtaacctctccc
tgcttgcgatcctctcccccagggggcgcatctagtacccatagtcaagc
atcaggagcagcgcatgtcagccttgggctatatcatgtctgtcatctgt
cta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_137249873_137250048
seq2: B6Ng01-196L06.b_93_273 (reverse)

seq1  ATTTATTTAA----ACTTTTTTTTAAAGATTTATTTATTTATTATATGTA  46
      |||| || ||    | ||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAATCTATTTTTTTTTAAAGATTTATTTATTTATTATATGTA  50

seq1  AGTACACTGTAGCTGTCTTCAAACGCACCAGAAGAGGGCATCAGATCTCA  96
      ||||||| ||||||  ||||| || |||||||||||| |||||| |||||
seq2  AGTACACAGTAGCTAACTTCAGACACACCAGAAGAGGACATCAGGTCTCA  100

seq1  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGA  146
      |||| ||||||||||||||||||||||||||||||||||| || ||  ||
seq2  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTTAATTCCAGA  150

seq1  CCTTCGGAAGAGCAGTC-AGTGTTCTTACCC  176
      |||| ||||||||||||  || |||||||||
seq2  CCTTTGGAAGAGCAGTCGGGTATTCTTACCC  181

seq1: chr11_57239187_57240212
seq2: B6Ng01-196L06.g_64_1066

seq1  GAATTCCTTCCTCTGGAAGTGATGGGCTGTCTTCTGAAACTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCTGGAAGTGATGGGCTGTCTTCTGAAACTAAAAAAAAA  50

seq1  AAAAAAAAAAAAAAAAAAAACTCTTCGTCTCTAGGTTTTATCACAGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAACTCTTCGTCTCTAGGTTTTATCACAGCAAC  100

seq1  AGAAATGAAACTAGACCAGTCGCTGAGGAACAACCACCAAGATTGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAACTAGACCAGTCGCTGAGGAACAACCACCAAGATTGACCTC  150

seq1  TGACCTCCACACACATCCTTGTGCAAGACCCATACGTGCAGGAACATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCACACACATCCTTGTGCAAGACCCATACGTGCAGGAACATGCA  200

seq1  CACAGAAAATGATGGGCCCCCAATTGTCTGCTCTCATATTGGAGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAATGATGGGCCCCCAATTGTCTGCTCTCATATTGGAGAGCAAG  250

seq1  CCCATAAGTAGACAGGGGAGCCAGGAGATGAGCAAAACCAAGCAGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGTAGACAGGGGAGCCAGGAGATGAGCAAAACCAAGCAGTCCTC  300

seq1  ATAGCACCTTGCCGGCTCTAACCTCCTCCCATCCCGGGACTTCAAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACCTTGCCGGCTCTAACCTCCTCCCATCCCGGGACTTCAAGTGTG  350

seq1  TCTGTGTCTTCATTATTCGGAGTTCTCTGAGTCCTGAATAAGCCACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTTCATTATTCGGAGTTCTCTGAGTCCTGAATAAGCCACTGAA  400

seq1  CCTGTGTGAAAAGTCATGGGACATCTTCAGCAATGGCAACAGCGCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAAAAGTCATGGGACATCTTCAGCAATGGCAACAGCGCTGCCT  450

seq1  CCCCACTGTTATTTCTCCCAGGCTTATTTTGTCCTTGCCTTGCTGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGTTATTTCTCCCAGGCTTATTTTGTCCTTGCCTTGCTGAGCAG  500

seq1  CTGCAAGGGAGGCATCATGGGACCTTCACGAGAAACGAGGGGAAGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGGAGGCATCATGGGACCTTCACGAGAAACGAGGGGAAGTGACA  550

seq1  GATGTGCGGATGGAGACCGTCCACAGCTGCAGGGCAGCTAAGGTTTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCGGATGGAGACCGTCCACAGCTGCAGGGCAGCTAAGGTTTATGG  600

seq1  GAAGTGTTAAATCACTGAAGTCTTCCGGGTTCTTTAATAACATATATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTAAATCACTGAAGTCTTCCGGGTTCTTTAATAACATATATTGA  650

seq1  TTTGCTTGTGCTTCCCTGAGGGAGGAAGGATTTGACTAACAGCCAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTGCTTCCCTGAGGGAGGAAGGATTTGACTAACAGCCAGTGTT  700

seq1  CCCCTGAGAGCAAGCACCAGAGGGTCTGACTAAACACAGAAGAGTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAGAGCAAGCACCAGAGGGTCTGACTAAACACAGAAGAGTGAGAA  750

seq1  GCTAAGAAAAG-AAAAAAAAGAAGGTAAGAATGATGGTCTGTGAAATTGG  799
      ||||||||||| |||||||||||||||   ||||||||||||||||||||
seq2  GCTAAGAAAAGAAAAAAAAAGAAGGTA--GATGATGGTCTGTGAAATTGG  798

seq1  AAAATAATATGTACTTCACAGGGGCTGACACAGCTCAAAACAGAAGGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||  
seq2  AAAATAATATGTACTTCACAGGGGCTGACACAGCTCAAAACAG-AGGT--  845

seq1  AGAAAGAAGAATTCAATTCGCTCCTCTCTGCACTTTTAAAAGCACCTGTA  899
        ||||||||  |||||   ||||||||||||| |||||||||| |||||
seq2  --AAAGAAGAGATCAATCGCCTCCTCTCTGCAC-TTTAAAAGCA-CTGTA  891

seq1  ACCTCTTCCCTGCTTTGCCGATCCTCTCCCCCAGGGGGCGCCATCCTAGT  949
      ||||| |||||||||   |||||||||||||||||||||| ||| |||||
seq2  ACCTC-TCCCTGCTT--GCGATCCTCTCCCCCAGGGGGCG-CAT-CTAGT  936

seq1  ACCCATAGTCAAAGCCATTCCAAGAGCAGCGCATGTTCAGCCCTTGGGCT  999
      ||||||||||||   |||  || |||||||||||| |||| |||||||||
seq2  ACCCATAGTCAA--GCAT--CAGGAGCAGCGCATG-TCAG-CCTTGGGCT  980

seq1  ATATTCATGTTCTTGTTCATCTGTCTA  1026
      ||| ||||| |||   |||||||||||
seq2  ATA-TCATG-TCT--GTCATCTGTCTA  1003