BAC Information

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BAC

Clone NameB6Ng01-198F07
Chromosome1 (Build37)
Map Location 88,217,011 - 88,393,269
singlet/doubletdoublet
Overlap geneEG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7
Downstream genePtma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F07.bB6Ng01-198F07.g
ACCGA019955GA019956
length1,154768
definitionB6Ng01-198F07.b B6Ng01-198F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,217,011 - 88,217,564)(88,392,509 - 88,393,269)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccaccattccccag
ctgaagagttctgaattcacgcagttgaatccttctcaacagtctgtttt
acgggaacacttcattaccaccgttccccagctgaagagttctgaatcca
ggatggatccttctcaacagtctgttttatgggaacacttcattaccatg
acccgcagttctggttccggaatgagggatcttccttgcgccggtgatgg
ttaactcccgtcccgagttttcttgtcccgggttttttcgtcccgggttc
tttcttcccggattttctcgtcccgtcccgtcccgtcccgggttttctcg
tcctgtcccgggtttcggcaccaactcttaacacgcgttcacgcgactgg
ccaggaagaacacagcaaaccagaatcttctgcggcaaaactttattgct
tacatcttcaggagcaagagtgcaaaccccccattgcttacatctttagg
agccagagcgccagagctttattgcttacatctttaggagcatgaagcaa
gagccagagcaagagcaagaagaagaacaagagcaagagagagaaaaaga
aagcaagaaaaagaacaagaacaagaaagcaagagtgcaagagcaaaagc
cagagcaagagagaaaaagaacaagaacaagaaagcaagagaaagaacaa
gaaagcaagaaagcgagagcaagaacaagaaagcaagagagagaaaaagc
aagaacaagagagagaaaaagaatgggcaaaaccccgtcccttttaagga
gaattatcctccgcctaggacgtattactccctgattggctgcagcccat
cggctcagttgtcatcacgagaaaggcagtaacacatggcggggaaactg
cccctgcacgtgtgcagattatgttgacaacttacgaacacagcttgtca
gcgccaatctataattgccaatgtgagggcgggcttcccacaggcactga
agctattcagttgggacaaccctgtcatctgatcacccaggagtgggtat
caag
gaattccaggacagccccggctacacagagaaacccttgtctgaaaaaaa
aaaaaagttgggggtgggaagggttgggaatggtgacacacaatttaaat
cccagcaatcaggaggcaaggcaagcagatcgctgagttcaaggccagct
tcatctacatagtgagttccaggacagccaaggctacactaatagacaag
agcttggaagttaagagcacgcactgttcttgcagaggacttccagttcc
agagggtttcctatgccctctgacttttgtgggcacctgcacacacacag
ggcacatagactcataacaatacacatgcacatagaaataataaatcttg
aaagaaaaacaaaaaataaaatctaagagaccggcagttaaatcgcagct
gtgcccatggccagaacaaccacaatggactactgtgaacgagtgtcctg
gggcaggcagcctgtggggaacaagcataggctcctcacttaacctcagt
gttgctcaaaacacacctgagaacatgtcttggaagatataccacagcct
ctttgtgactgctggtggaaggatgaagacagtgtcacagtgggctgcta
gggaagctggtggccactagccctgactatacggcttcacgtttcctagc
ccaacattctatatcacttcatcttcatgataggcaccggccaccatgtt
tttacccagtcttttgaggatgttttctcatttcccctcctccgaatggt
cccttattacactttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88217011_88217564
seq2: B6Ng01-198F07.b_641_1202

seq1  TCTTTAGGAGCCAGAGCGCCAGAGCTTTATTGCTTACATCTTTAGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGAGCCAGAGCGCCAGAGCTTTATTGCTTACATCTTTAGGAGCA  50

seq1  TGAAGCAAGAGCCAGAGCAAGAGCAAGAAGAAGAACAAGAGCAAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGAGCCAGAGCAAGAGCAAGAAGAAGAACAAGAGCAAGAGAGA  100

seq1  GAAAAAGAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGTGCAAGA  150

seq1  GCAAAAGCCAGAGCAAGAGAGAAAAAGAACAAGAACAAGAAAGCAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCCAGAGCAAGAGAGAAAAAGAACAAGAACAAGAAAGCAAGAGA  200

seq1  AAGAACAAGAAAGCAAGAAAGCAAGAGCAAGAACAAGAAAGCAAGAGAGA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAACAAGAAAGCAAGAAAGCGAGAGCAAGAACAAGAAAGCAAGAGAGA  250

seq1  GAAAAAGCAAGAACAAGAGAGAGAAAAAGAAT-GGCAAAACCCCGTCCCT  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAAAGCAAGAACAAGAGAGAGAAAAAGAATGGGCAAAACCCCGTCCCT  300

seq1  TTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTG  350

seq1  CAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAG-AACACATGGCGG  398
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAGTAACACATGGCGG  400

seq1  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTA-GAACACA  447
      | ||||||||||||||||||||||||||||||| || ||||| |||||||
seq2  GGAAACTGCCCCTGCACGTGTGCAGATTATGTTGACAACTTACGAACACA  450

seq1  GC-TGTCAGCGCCATCTTATAATGGCAAATGTGAGGGC-GGCTTCCCACA  495
      || |||||||||||   |||||| || ||||||||||| |||||||||||
seq2  GCTTGTCAGCGCCAATCTATAATTGCCAATGTGAGGGCGGGCTTCCCACA  500

seq1  GGCACTGAAGCTA-TCAGTT-GGACAAACCTGTCATCTGATCACCCA-GA  542
      ||||||||||||| |||||| |||||| ||||||||||||||||||| ||
seq2  GGCACTGAAGCTATTCAGTTGGGACAACCCTGTCATCTGATCACCCAGGA  550

seq1  GTGTGTATCAAG  554
      ||| ||||||||
seq2  GTGGGTATCAAG  562

seq1: chr1_88392509_88393269
seq2: B6Ng01-198F07.g_64_831 (reverse)

seq1  GAAAAAGT-TTCTAAGGACCC--TCGGA-GAGGGG-AATGAGGAAACATC  45
      |||||||| |  |||||  ||  ||||| |||||| |||||| |||||||
seq2  GAAAAAGTGTAATAAGGGACCATTCGGAGGAGGGGAAATGAGAAAACATC  50

seq1  CTCAAAAGCCTGGGT-AAAACATGGTGGCCGGTGCCTATCATGAAGATGA  94
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGACTGGGTAAAAACATGGTGGCCGGTGCCTATCATGAAGATGA  100

seq1  AGTGATATAGAATGTT-GGCTAGGAAACGTGAAGCCGTATAGTCAGGGCT  143
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGATATAGAATGTTGGGCTAGGAAACGTGAAGCCGTATAGTCAGGGCT  150

seq1  AGTGGCCACCAGCTTCCCTAGCAGCCCACTGTGACACTGTCTTCATCCTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCACCAGCTTCCCTAGCAGCCCACTGTGACACTGTCTTCATCCTT  200

seq1  CCACCAGCTGTCACAAAGAGGCTGTGGTATATCTTCCAAGACATGTTCTC  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCAGTCACAAAGAGGCTGTGGTATATCTTCCAAGACATGTTCTC  250

seq1  AGGTGTGTTCTGAGCAACACTGAGGTTAAGTGAGGAGCCTATGCTTGTTC  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTTTTGAGCAACACTGAGGTTAAGTGAGGAGCCTATGCTTGTTC  300

seq1  CCCACAGGCTGCCTGCCCCAGGACACTCGTTCACAGTAGTCCATTGTGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCTGCCTGCCCCAGGACACTCGTTCACAGTAGTCCATTGTGGT  350

seq1  TGTTCTGGCCATGGGCACAGCTGCGATTTAACTGCCGGTCTCTTAGATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCCATGGGCACAGCTGCGATTTAACTGCCGGTCTCTTAGATTT  400

seq1  TATTTTTTGTTTTTCTTTCAAGATTTATTATTTCTATGTGCATGTGTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGTTTTTCTTTCAAGATTTATTATTTCTATGTGCATGTGTATT  450

seq1  GTTATGAGTCTATGTGCCCTGTGTGTGTGCAGGTGCCCACAAAAGTCAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGTCTATGTGCCCTGTGTGTGTGCAGGTGCCCACAAAAGTCAGA  500

seq1  GGGCATAGGAAACCCTCTGGAACTGGAAGTCCTCTGCAAGAACAGTGCGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGGAAACCCTCTGGAACTGGAAGTCCTCTGCAAGAACAGTGCGT  550

seq1  GCTCTTAACTTCCAAGCTCTTGTCTATTAGTGTAGCCTTGGCTGTCCTGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACTTCCAAGCTCTTGTCTATTAGTGTAGCCTTGGCTGTCCTGG  600

seq1  AACTCACTATGTAGATGAAGCTGGCCTTGAACTCAGCGATCTGCTTGCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATGTAGATGAAGCTGGCCTTGAACTCAGCGATCTGCTTGCCT  650

seq1  TGCCTCCTGATTGCTGGGATTTAAATTGTGTGTCACCATTCCCAACCCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGATTGCTGGGATTTAAATTGTGTGTCACCATTCCCAACCCTT  700

seq1  CCCACCCCCAACTTTTTTTTTTTTTCAGACAAGGGTTTCTCTGTGTAGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCAACTTTTTTTTTTTTTCAGACAAGGGTTTCTCTGTGTAGCC  750

seq1  GGGGCTGTCCTGGAATTC  761
      ||||||||||||||||||
seq2  GGGGCTGTCCTGGAATTC  768