BAC Information

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BAC

Clone NameB6Ng01-198G05
Chromosome1 (Build37)
Map Location 187,885,387 - 188,001,434
singlet/doubletdoublet
Overlap geneLyplal1
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198G05.bB6Ng01-198G05.g
ACCGA019998GA019999
length1,1561,167
definitionB6Ng01-198G05.b B6Ng01-198G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,999,985 - 188,001,434)(187,885,387 - 187,886,547)
sequence
gaattccctccctgtggaaaaatttgttttgaattatttgctttttaagt
tatgtgaagtctccaggaaaaacacttgtctcataggaaaggcaaaagcc
ctgtactaaaattgtattcccacaactctaccttatggtccggagggttt
agtcagaaagagctctttattactctacacatcctctgccaaagaaacgg
gattatttctctcactctgtcttttattatgcctctcttcctgtcttaaa
tatcttccctcttcctaccactaatccaaacacacggcctggcttcaaag
acccactcaagagccactccagggccaaaggggcacctgccttagaggag
ggtgtgtttgaactggagcttgaagattatctagctcaaatattttccaa
ctgtgcagagtaggccccttggagcctttggaaagagcattaaaatggga
aggggtgggaagagcatccatggcctgggagaggagggaggctcacctta
cttaccattcccagagagacaatgcttggtaaaaaggggtttccagagct
ttggggtataagacctgtaagttttgtaagataaattaccagttcaagcc
tgacgcatagagtgcttcacccagcttgacaaagaattaggaaagtaggg
tatgcttgctaacatcttcaactctggggcctcccaacctaggtacatta
gacgtcagagaacaactggaaactggtttttctccttcttccatctcttt
gccactatgtaagacagtgaatttccagattcccccgtcattgttttcct
tctgctggtgtagctgcattggggttaagaatcctcactactgcatcaga
ctttgatgtgaattctggggatcggaaattgtgttgcccggcttgtggca
taggcacggattcatacgtgccattagatagaacagcactcagaagccca
ctcaaggcactggctgaaacaacacaagccgtagattattagaaacttgt
taaattccaccagtggttgtgagcacagcctgtgtttttgtgtaggaaaa
attaattcgatctttcctgggcctcccccttgttctttttgacctcttgt
catgtttaaaagtgacattaatgactaggtaattgcctgtctgcatgatc
tctctg
gaattctttccttagaacttgaatagatgattactcttgggtattagcta
tcaattggcttatcaaagccaactcagcttactcaaagtacagagttcaa
taaatattgttcagacaaagggagggacattctgatggcaggaccactct
gagagatcaatagaggtgcagtaaaaacttgacattttaagtgttttgga
gatcatatttcccaccctctcatttgaacttgagaagatgaaggcagagt
tttgttgcaatggcaaggtccagacatcagatgtccagagtccccgtgcc
ttcatgttcatccacttaaagttttatccacccagggtccacccagcatc
ccataagtgtcagggactgtgctagatgttgaggacaaagtagcagaggc
tgctgttctgcccctggggagagcacactgtgaggtgcaagccaaatagg
caagggaataatgaagaaggaattatgaactacaagccttgaaagagcac
cccaggaatctatgagaaggcctgggagccccactcagcctgggtgccct
caaaaagctccctaactctaaccctgaccctgaccctcaaggtaacagat
ctctttatctaaaaccagttcccaacaaccactctcaggtcaataacacg
ttgccaataagatgtggtgatgaaattattggtagctgttgaaaacttct
ttgtgccatttctttcttccacggagtcagagattttgctgagtcttaga
ttggtcaacaatgataatgtcatttgtgaggaaaccgggacctttgttgt
acttcaaaacaacacatgtttaaacaatgacatttgaagcttgtagtgat
ttgtgttttattcttctaatgatgtgttcagcaaatagctcactgggcgt
ttttctgaatgtcatgttgaatggcagagaatttcccaagactatgaata
tccactagcactgggcttggactttttaatgtatttaaccccatcgtttc
tggaatgacactacttcagccaggcatggtggggagttaagacacctgac
cttttctttagccatttcctaaggagtcaaagaatacgtctattcaatta
caaaatggaagtcacacttcgggtttatgcatgattacacctgccttgaa
cctataattgagcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187999985_188001434
seq2: B6Ng01-198G05.b_46_1201 (reverse)

seq1  CAGAGAGAGAAGGCAGTAGTGGATACTCCACAGAACAAGCTGAAACAGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAAGGATGGACATGCAGACAAACAAAACAAAAACAAACAAACAAACAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAACCAAAGACAGAAAATGCAGCACACTGTTCCCTATGTTTGTTAAAAGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGGGCAGCCAGATGAGATGTTTCCAAAGGATCAGAACCAATGAGAGAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAGTTCTGAAGGAGGAGTAGACACTCAGATTATCTTGTTGAAATACCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGATGCATTCTTGAATACTCTCTCCCCAAAGGAGAGTTGATGCCTAAAAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGA-TTCATTGCAGACAGGGAAATTAACTAGTCATTAAATGTCAACT  349
      ||||||  ||| |||||||| || ||||| ||||||||| |||||| |||
seq2  CAGAGAGATCA-TGCAGACA-GGCAATTACCTAGTCATT-AATGTC-ACT  46

seq1  TGTAAACATGACAAGA-GTTAAAAAG-ACAA-GTGGAG--CCA-GAAAGA  393
      | |||||||||||||| || |||||| |||| | ||||  ||| ||||||
seq2  TTTAAACATGACAAGAGGTCAAAAAGAACAAGGGGGAGGCCCAGGAAAGA  96

seq1  TCGATTTA--TTTTTCTACAC-AAAACACA-GCTGTGCTCACAACCACTG  439
      |||| |||  |||| |||||| |||||||| |||||||||||||||||||
seq2  TCGAATTAATTTTTCCTACACAAAAACACAGGCTGTGCTCACAACCACTG  146

seq1  GTGAATTTTAAC-AGTTTCTAATAATCTACGGCTTGTGTTGTTTTCAGCC  488
      ||| | |||||| |||||||||||||||||||||||||||| ||||||||
seq2  GTGGAATTTAACAAGTTTCTAATAATCTACGGCTTGTGTTG-TTTCAGCC  195

seq1  AGTGCCTTGAGTGGGCTTTCTGAGTGCTGTTCTATCTAATGGCACGTATG  538
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGCCTTGAGTGGGC-TTCTGAGTGCTGTTCTATCTAATGGCACGTATG  244

seq1  AATCCGTGCCTATGCCACAAGCCGGGCAACACAATTTCCGATCCCCAGAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGTGCCTATGCCACAAGCCGGGCAACACAATTTCCGATCCCCAGAA  294

seq1  TTCACATCAAAGTCTGATGCAGTAGTGAGGATTCTTAACCCCAATGCAGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCAAAGTCTGATGCAGTAGTGAGGATTCTTAACCCCAATGCAGC  344

seq1  TACACCAGCAGAAGGAAAACAATGACGGGGGAATCTGGAAATTCACTGTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGCAGAAGGAAAACAATGACGGGGGAATCTGGAAATTCACTGTC  394

seq1  TTACATAGTGGCAAAGAGATGGAAGAAGGAGAAAAACCAGTTTCCAGTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTGGCAAAGAGATGGAAGAAGGAGAAAAACCAGTTTCCAGTTG  444

seq1  TTCTCTGACGTCTAATGTACCTAGGTTGGGAGGCCCCAGAGTTGAAGATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGACGTCTAATGTACCTAGGTTGGGAGGCCCCAGAGTTGAAGATG  494

seq1  TTAGCAAGCATACCCTACTTTCCTAATTCTTTGTCAAGCTGGGTGAAGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGCATACCCTACTTTCCTAATTCTTTGTCAAGCTGGGTGAAGCA  544

seq1  CTCTATGCGTCAGGCTTGAACTGGTAATTTATCTTACAAAACTTACAGGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCGTCAGGCTTGAACTGGTAATTTATCTTACAAAACTTACAGGT  594

seq1  CTTATACCCCAAAGCTCTGGAAACCCCTTTTTACCAAGCATTGTCTCTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCCCAAAGCTCTGGAAACCCCTTTTTACCAAGCATTGTCTCTCT  644

seq1  GGGAATGGTAAGTAAGGTGAGCCTCCCTCCTCTCCCAGGCCATGGATGCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGTAAGTAAGGTGAGCCTCCCTCCTCTCCCAGGCCATGGATGCT  694

seq1  CTTCCCACCCCTTCCCATTTTAATGCTCTTTCCAAAGGCTCCAAGGGGCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACCCCTTCCCATTTTAATGCTCTTTCCAAAGGCTCCAAGGGGCC  744

seq1  TACTCTGCACAGTTGGAAAATATTTGAGCTAGATAATCTTCAAGCTCCAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGCACAGTTGGAAAATATTTGAGCTAGATAATCTTCAAGCTCCAG  794

seq1  TTCAAACACACCCTCCTCTAAGGCAGGTGCCCCTTTGGCCCTGGAGTGGC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACACACCCTCCTCTAAGGCAGGTGCCCCTTTGGCCCTGGAGTGGC  844

seq1  TCTTGAGTGGGTCTTTGAAGCCAGGCCGTGTGTTTGGATTAGTGGTAGGA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGGGTCTTTGAAGCCAGGCCGTGTGTTTGGATTAGTGGTAGGA  894

seq1  AGAGGGAAGATATTTAAGACAGGAAGAGAGGCATAATAAAAGACAGAGTG  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGATATTTAAGACAGGAAGAGAGGCATAATAAAAGACAGAGTG  944

seq1  AGAGAAATAATCCCGTTTCTTTGGCAGAGGATGTGTAGAGTAATAAAGAG  1288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAATCCCGTTTCTTTGGCAGAGGATGTGTAGAGTAATAAAGAG  994

seq1  CTCTTTCTGACTAAACCCTCCGGACCATAAGGTAGAGTTGTGGGAATACA  1338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGACTAAACCCTCCGGACCATAAGGTAGAGTTGTGGGAATACA  1044

seq1  ATTTTAGTACAGGGCTTTTGCCTTTCCTATGAGACAAGTGTTTTTCCTGG  1388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTACAGGGCTTTTGCCTTTCCTATGAGACAAGTGTTTTTCCTGG  1094

seq1  AGACTTCACATAACTTAAAAAGCAAATAATTCAAAACAAATTTTTCCACA  1438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCACATAACTTAAAAAGCAAATAATTCAAAACAAATTTTTCCACA  1144

seq1  GGGAGGGAATTC  1450
      ||||||||||||
seq2  GGGAGGGAATTC  1156

seq1: chr1_187885387_187886547
seq2: B6Ng01-198G05.g_65_1231

seq1  GAATTCTTTCCTTAGAACTTGAATAGATGATTACTCTTGGGTATTAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTAGAACTTGAATAGATGATTACTCTTGGGTATTAGCTA  50

seq1  TCAATTGGCTTATCAAAGCCAACTCAGCTTACTCAAAGTACAGAGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGCTTATCAAAGCCAACTCAGCTTACTCAAAGTACAGAGTTCAA  100

seq1  TAAATATTGTTCAGACAAAGGGAGGGACATTCTGATGGCAGGACCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGTTCAGACAAAGGGAGGGACATTCTGATGGCAGGACCACTCT  150

seq1  GAGAGATCAATAGAGGTGCAGTAAAAACTTGACATTTTAAGTGTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCAATAGAGGTGCAGTAAAAACTTGACATTTTAAGTGTTTTGGA  200

seq1  GATCATATTTCCCACCCTCTCATTTGAACTTGAGAAGATGAAGGCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATTTCCCACCCTCTCATTTGAACTTGAGAAGATGAAGGCAGAGT  250

seq1  TTTGTTGCAATGGCAAGGTCCAGACATCAGATGTCCAGAGTCCCCGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCAATGGCAAGGTCCAGACATCAGATGTCCAGAGTCCCCGTGCC  300

seq1  TTCATGTTCATCCACTTAAAGTTTTATCCACCCAGGGTCCACCCAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCATCCACTTAAAGTTTTATCCACCCAGGGTCCACCCAGCATC  350

seq1  CCATAAGTGTCAGGGACTGTGCTAGATGTTGAGGACAAAGTAGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTGTCAGGGACTGTGCTAGATGTTGAGGACAAAGTAGCAGAGGC  400

seq1  TGCTGTTCTGCCCCTGGGGAGAGCACACTGTGAGGTGCAAGCCAAATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTGCCCCTGGGGAGAGCACACTGTGAGGTGCAAGCCAAATAGG  450

seq1  CAAGGGAATAATGAAGAAGGAATTATGAACTACAAGCCTTGAAAGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATAATGAAGAAGGAATTATGAACTACAAGCCTTGAAAGAGCAC  500

seq1  CCCAGGAATCTATGAGAAGGCCTGGGAGCCCCACTCAGCCTGGGTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAATCTATGAGAAGGCCTGGGAGCCCCACTCAGCCTGGGTGCCCT  550

seq1  CAAAAAGCTCCCTAACTCTAACCCTGACCCTGACCCTCAAGGTAACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCTCCCTAACTCTAACCCTGACCCTGACCCTCAAGGTAACAGAT  600

seq1  CTCTTTATCTAAAACCAGTTCCCAACAACCACTCTCAGGTCAATAACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCTAAAACCAGTTCCCAACAACCACTCTCAGGTCAATAACACG  650

seq1  TTGCCAATAAGATGTGGTGATGAAATTATTGGTAGCTGTTGAAAACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATAAGATGTGGTGATGAAATTATTGGTAGCTGTTGAAAACTTCT  700

seq1  TTGTGCCATTTCTTTCTTCCACGGAGTCAGAGATTTTGCTGAGTCTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATTTCTTTCTTCCACGGAGTCAGAGATTTTGCTGAGTCTTAGA  750

seq1  TTGGTCAACAATGATAATGTCATTTGTGAGGAAACCGGGACCTTTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAACAATGATAATGTCATTTGTGAGGAAACCGGGACCTTTGTTGT  800

seq1  ACTTCAAAACAACACATGTTTAAACAATGACATTTGAAGCTTGTAGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAACAACACATGTTTAAACAATGACATTTGAAGCTTGTAGTGAT  850

seq1  TTGTGTTTTATTCTTCTAATGATGTGTTCAGCAAATAGCTCACTGGGCG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTGTTTTATTCTTCTAATGATGTGTTCAGCAAATAGCTCACTGGGCGT  900

seq1  TTTTCTGAATGTCATG-TGAATGGCAGAGAATTTCCAAAGACTATGAATA  948
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TTTTCTGAATGTCATGTTGAATGGCAGAGAATTTCCCAAGACTATGAATA  950

seq1  TCCACTAGCACT-GGCTT-GACTTTTTAATGTTATTTTAACCCATCGTTT  996
      |||||||||||| ||||| |||||||||||| ||||| | ||||||||||
seq2  TCCACTAGCACTGGGCTTGGACTTTTTAATG-TATTTAACCCCATCGTTT  999

seq1  CCTGGAATGACACTAC-TCAGCCA-GCATG--TGGGAGTTAAGAACACTG  1042
       ||||||||||||||| ||||||| |||||   |||||||||||   |||
seq2  -CTGGAATGACACTACTTCAGCCAGGCATGGTGGGGAGTTAAGACACCTG  1048

seq1  A-CTTTTCTTTAG-CATTTCCTAAGGAGTCAAAG-ATACGTCTAT--CAT  1087
      | ||||||||||| |||||||||||||||||||| ||||||||||   ||
seq2  ACCTTTTCTTTAGCCATTTCCTAAGGAGTCAAAGAATACGTCTATTCAAT  1098

seq1  TACAAAAT-GAAATCACATATTCGTGTATATTTACATGGTTTTCCACTGC  1136
      |||||||| ||| |||||  |||| || ||  | ||| | || |  ||||
seq2  TACAAAATGGAAGTCACA-CTTCGGGTTTA--TGCAT-GATTACACCTGC  1144

seq1  CTTTGAAACTTATAATTGAGCATTT  1161
      |||   ||| |||||||||||||||
seq2  CTT--GAACCTATAATTGAGCATTT  1167