BAC Information

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BAC

Clone NameB6Ng01-199H13
Chromosome1 (Build37)
Map Location 67,540,183 - 67,694,325
singlet/doubletdoublet
Overlap geneKif22-ps
Upstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H13.bB6Ng01-199H13.g
ACCGA020798GA020799
length5151,119
definitionB6Ng01-199H13.b B6Ng01-199H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,693,805 - 67,694,325)(67,540,183 - 67,541,292)
sequence
tctgtagtgaaattccctgtcctgaacttcacaacagtgttgagtaatag
aatgcattctaataatgaaataaataaataaaactaagatagtactttga
gcatgatcattgtgcacactggattgtgcatgtctgtggtctacaagcaa
ggcattttaaattactaatttcggctgttgtgagcagccagtcattgcac
atacacaatcttcattgttgttctgacctatgtcgcatcctctgatttat
gtactgctgttcttttaacttattaaattaaaggaaacacagcattatta
actggtatgcaatgtaccacagtcatggaagtacttccttggaattgttt
tggtttggttttaatacatcttcttgtctccagattttctaccttatccc
acctcagggccttcactctgttcttccctctggaattttcttcatcttaa
atatttgcttattttctatatatatatggtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtg

gaattctaatctctcttgtgcatcagaactgtttttagtttactgaacca
tctcactattctgtcttaaacacacctccatgccacatctcatctagggt
tatatggctattctgatgaaaccagctgtctattgtcctccatacaggaa
agccatgagttaatttgcttcctttactgtgctctccaaatgagcatttc
atcaaattgtcacatttcaataaattaacgtttcttttgagaacaattcc
tcttaaagctcctgtgcttattcccactcttgatgcattcttgctttatt
ttgtttctagacagcactgaattttctctttgctatcaaacctgtttctt
ataacatgtctgagcccctatctgtcatcattccaatcacatattttgtc
aggttaatattctcaggcaagctctataggtacaagcctagttctggtat
ttattagaatttttatctcaagaaaatttaatttatttctaatttctctt
tcataaaatgtactcagtcatttagggaatagatttttattaaggattaa
ttgattggcaatggttttgttcctgtaatgatggatccaaaccttttgtt
tttttcagagttggttttctagttgtggaaggaaaagatgaaacaagtac
aaaataacatcagaacaataattttagatgcttgttaagttctccggaga
aactatattgagatggaatggcataaaacgttcccatagcttgagaaaga
gaatttgtttaattattttagattcggtaagtagtcaaaaagctctcctc
atattttttgtgggatccactaaaagaatatgcttgtcacagtacagtca
tgagcagatgtgggaagaataatccaaggaggtatacagtaactacaaat
gtcttgatgtgtgaaagagtttggataggaagaaaagatcaattgtctct
gggaacagcaggtgaatgaagttacagagcagaagaatagccaagagctc
agggagcaacctctgattgccaagaccattctggaaaccggagtgtggct
tgtttgacagtttaaatgaaaccagcaaacaaatgggagaaatttagttt
ttggtgttaacctaatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67693805_67694325
seq2: B6Ng01-199H13.b_41_561 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACCATATATATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACCATATATATATAG  50

seq1  AAAATAAGCAAATATTTAAGATGAAGAAAATTCCAGAGGGAAGAACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGCAAATATTTAAGATGAAGAAAATTCCAGAGGGAAGAACAGAG  100

seq1  TGAAGGCCCTGAGGTGGGATAAGGTAGAAAATCTGGAGACAAGAAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCCTGAGGTGGGATAAGGTAGAAAATCTGGAGACAAGAAGATGT  150

seq1  ATTAAAACCAAACCAAAACAATTCCAAGGAAGTACTTCCATGACTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACCAAACCAAAACAATTCCAAGGAAGTACTTCCATGACTGTGGT  200

seq1  ACATTGCATACCAGTTAATAATGCTGTGTTTCCTTTAATTTAATAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCATACCAGTTAATAATGCTGTGTTTCCTTTAATTTAATAAGTTA  250

seq1  AAAGAACAGCAGTACATAAATCAGAGGATGCGACATAGGTCAGAACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGCAGTACATAAATCAGAGGATGCGACATAGGTCAGAACAACA  300

seq1  ATGAAGATTGTGTATGTGCAATGACTGGCTGCTCACAACAGCCGAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATTGTGTATGTGCAATGACTGGCTGCTCACAACAGCCGAAATTA  350

seq1  GTAATTTAAAATGCCTTGCTTGTAGACCACAGACATGCACAATCCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAAAATGCCTTGCTTGTAGACCACAGACATGCACAATCCAGTGT  400

seq1  GCACAATGATCATGCTCAAAGTACTATCTTAGTTTTATTTATTTATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGATCATGCTCAAAGTACTATCTTAGTTTTATTTATTTATTTCA  450

seq1  TTATTAGAATGCATTCTATTACTCAACACTGTTGTGAAGTTCAGGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAATGCATTCTATTACTCAACACTGTTGTGAAGTTCAGGACAGG  500

seq1  GAATTTCACTACAGAGAATTC  521
      |||||||||||||||||||||
seq2  GAATTTCACTACAGAGAATTC  521


seq1: chr1_67540183_67541292
seq2: B6Ng01-199H13.g_62_1180

seq1  GAATTCTAATCTCTCTTGTGCATCAGAACTGTTTTTAGTTTACTGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCTCTCTTGTGCATCAGAACTGTTTTTAGTTTACTGAACCA  50

seq1  TCTCACTATTCTGTCTTAAACACACCTCCATGCCACATCTCATCTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATTCTGTCTTAAACACACCTCCATGCCACATCTCATCTAGGGT  100

seq1  TATATGGCTATTCTGATGAAACCAGCTGTCTATTGTCCTCCATACAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCTATTCTGATGAAACCAGCTGTCTATTGTCCTCCATACAGGAA  150

seq1  AGCCATGAGTTAATTTGCTTCCTTTACTGTGCTCTCCAAATGAGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGAGTTAATTTGCTTCCTTTACTGTGCTCTCCAAATGAGCATTTC  200

seq1  ATCAAATTGTCACATTTCAATAAATTAACGTTTCTTTTGAGAACAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGTCACATTTCAATAAATTAACGTTTCTTTTGAGAACAATTCC  250

seq1  TCTTAAAGCTCCTGTGCTTATTCCCACTCTTGATGCATTCTTGCTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCTCCTGTGCTTATTCCCACTCTTGATGCATTCTTGCTTTATT  300

seq1  TTGTTTCTAGACAGCACTGAATTTTCTCTTTGCTATCAAACCTGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAGACAGCACTGAATTTTCTCTTTGCTATCAAACCTGTTTCTT  350

seq1  ATAACATGTCTGAGCCCCTATCTGTCATCATTCCAATCACATATTTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGTCTGAGCCCCTATCTGTCATCATTCCAATCACATATTTTGTC  400

seq1  AGGTTAATATTCTCAGGCAAGCTCTATAGGTACAAGCCTAGTTCTGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATATTCTCAGGCAAGCTCTATAGGTACAAGCCTAGTTCTGGTAT  450

seq1  TTATTAGAATTTTTATCTCAAGAAAATTTAATTTATTTCTAATTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAATTTTTATCTCAAGAAAATTTAATTTATTTCTAATTTCTCTT  500

seq1  TCATAAAATGTACTCAGTCATTTAGGGAATAGATTTTTATTAAGGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATGTACTCAGTCATTTAGGGAATAGATTTTTATTAAGGATTAA  550

seq1  TTGATTGGCAATGGTTTTGTTCCTGTAATGATGGATCCAAACCTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGCAATGGTTTTGTTCCTGTAATGATGGATCCAAACCTTTTGTT  600

seq1  TTTTTCAGAGTTGGTTTTCTAGTTGTGGAAGGAAAAGATGAAACAAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAGTTGGTTTTCTAGTTGTGGAAGGAAAAGATGAAACAAGTAC  650

seq1  AAAATAACATCAGAACAATAATTTTAGATGCTTGTTAAGTTCTCCGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACATCAGAACAATAATTTTAGATGCTTGTTAAGTTCTCCGGAGA  700

seq1  AACTATATTGAGATGGAATGGCATAAAACGTTCCCATAGCTTGAGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTATATTGAGATGGAATGGCATAAAACGTTCCCATAGCTTGAG-AAAG  749

seq1  AGAATTTGTTTAATTATTTTAGATTCGGTAAGTAGTCAAAAAGCTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTTTAATTATTTTAGATTCGGTAAGTAGTCAAAAAGCTCTCCT  799

seq1  CATATTTTTTGTGGGATCCACTAAAAGAATATGCTTGTCACAGTACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTTGTGGGATCCACTAAAAGAATATGCTTGTCACAGTACAGTC  849

seq1  ATGAGCAGATGTGGGAAGAATAATCCAAGGAGGTATACAGTAACTACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGATGTGGGAAGAATAATCCAAGGAGGTATACAGTAACTACAAA  899

seq1  TGTCTTGATGTGTGAAAGAGTTT-GATAGGAAG-AAAGATCAA-TGTCTC  947
      ||||||||||||||||||||||| ||||||||| ||||||||| ||||||
seq2  TGTCTTGATGTGTGAAAGAGTTTGGATAGGAAGAAAAGATCAATTGTCTC  949

seq1  T-GGAACAGCAGGTGAATGAAGTTACAGAGCAGAAG-ATAGCCAAGAGCT  995
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGAACAGCAGGTGAATGAAGTTACAGAGCAGAAGAATAGCCAAGAGCT  999

seq1  CAGGGAGCAACCTCTGATTGCCCAAGACCA-TCTGGAACCGGAAGTGTGG  1044
      |||||||||||||||||||| ||||||||| ||||||| | | |||||||
seq2  CAGGGAGCAACCTCTGATTG-CCAAGACCATTCTGGAAACCGGAGTGTGG  1048

seq1  C-TGTTTGACAG-TTAAATGAAA-CAGCAAACAAAT-GGAGAAATTTAAG  1090
      | |||||||||| |||||||||| |||||||||||| |||||||||||  
seq2  CTTGTTTGACAGTTTAAATGAAACCAGCAAACAAATGGGAGAAATTTAGT  1098

seq1  TTTT-GTGTTTAACTAATCTA  1110
      |||| ||||| | ||||||||
seq2  TTTTGGTGTTAACCTAATCTA  1119


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