BAC Information

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BAC

Clone NameB6Ng01-200A06
Chromosome1 (Build37)
Map Location 189,107,925 - 189,253,877
singlet/doubletdoublet
Overlap geneGpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200A06.bB6Ng01-200A06.g
ACCGA021193GA021194
length1,054324
definitionB6Ng01-200A06.b B6Ng01-200A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,107,925 - 189,108,962)(189,253,554 - 189,253,877)
sequence
gaattcttctgtgatctccggtcccatacttatcactggctagaaccttg
ctctttagaaattgccaaacctgtgccttgttttcagcttccacacctgt
ttcacctctcagatcaggtcctcctggagagcttggatttttgtcattgt
tggtataacagcttgatgccagtctctaagaggagatttttatccagggt
tgttgttttgggtttttccttgcttgtgtagctctctacacactccctct
gtcagcagcatgcaggttttattctccttttgtctctactattttcccag
ccttcgaagtgaaaataggtgggaacatcagctgtttggcacttgagaat
aacagcctgttaatgcgctgagcccttgtagctgctctcagccctctcct
agcaagccgcaggctgccactgtcctagccacactctccatcttctgggc
ttgcacagttgggtggttctgcagaccctctgcctggccaagtccttgaa
ctcagcactgtgtctgtgacggactggagcactaggactgccaggagtcg
gtcggtcagaggagtggacgcagcatctcagttctcaagccttaatgatg
ggaaagagctttcgcgtgccaaggacggggtcttcagctcctcagaggaa
ggagagttgccgttgcccaacaataacctgctcacagcaagattctcacc
ttgaattgtactttttgaccctgtcgtcatcagcgtctgtagcccacata
ctccacttacaaacttgtacccaaaagaaggttctgttatcatttaaaca
tcttctctctctctcttccttccttccttttctttgttcctttctttcct
tctttctttcttttgccctctccctctttctttctttctttcttccttct
ttctttcctttcttcttccttctttctttccttttttccttcctggtcca
ttctttccattataaataccatgattttccccctttccctctcctcctta
ggaaacccttccaatatacctctggttccttggttcttttttcaaatttc
atgg

caggtatgggactagaggatatctgatgtcttctggaaccctcaagtatg
aacaaatgcacacaatgtaaatgtacatgcccaccacacacacacacaca
cacacacacacacgcacatgcacacgcacacacacacgcacatgcacacg
cacatgcacatgcacacaccaaagcaataaaatcttgttgtcctttttcc
aacattccctagtcatgttcctgtctttagttttattcagaaaactgtta
tctttgtgtcacaacagaaggtaaatacacaatgacgaagacacacacag
ggaatgagggggaggggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189107925_189108962
seq2: B6Ng01-200A06.b_47_1100

seq1  GAATTCTTCTGTGATCTCCGGTCCCATACTTATCACTGGCTAGAACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGATCTCCGGTCCCATACTTATCACTGGCTAGAACCTTG  50

seq1  CTCTTTAGAAATTGCCAAACCTGTGCCTTGTTTTCAGCTTCCACACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGAAATTGCCAAACCTGTGCCTTGTTTTCAGCTTCCACACCTGT  100

seq1  TTCACCTCTCAGATCAGGTCCTCCTGGAGAGCTTGGATTTTTGTCATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTCAGATCAGGTCCTCCTGGAGAGCTTGGATTTTTGTCATTGT  150

seq1  TGGTATAACAGCTTGATGCCAGTCTCTAAGAGGAGATTTTTATCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAACAGCTTGATGCCAGTCTCTAAGAGGAGATTTTTATCCAGGGT  200

seq1  TGTTGTTTTGGGTTTTTCCTTGCTTGTGTAGCTCTCTACACACTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGGGTTTTTCCTTGCTTGTGTAGCTCTCTACACACTCCCTCT  250

seq1  GTCAGCAGCATGCAGGTTTTATTCTCCTTTTGTCTCTACTATTTTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGCATGCAGGTTTTATTCTCCTTTTGTCTCTACTATTTTCCCAG  300

seq1  CCTTCGAAGTGAAAATAGGTGGGAACATCAGCTGTTTGGCACTTGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAAGTGAAAATAGGTGGGAACATCAGCTGTTTGGCACTTGAGAAT  350

seq1  AACAGCCTGTTAATGCGCTGAGCCCTTGTAGCTGCTCTCAGCCCTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTGTTAATGCGCTGAGCCCTTGTAGCTGCTCTCAGCCCTCTCCT  400

seq1  AGCAAGCCGCAGGCTGCCACTGTCCTAGCCACACTCTCCATCTTCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCGCAGGCTGCCACTGTCCTAGCCACACTCTCCATCTTCTGGGC  450

seq1  TTGCACAGTTGGGTGGTTCTGCAGACCCTCTGCCTGGCCAAGTCCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTTGGGTGGTTCTGCAGACCCTCTGCCTGGCCAAGTCCTTGAA  500

seq1  CTCAGCACTGTGTCTGTGACGGACTGGAGCACTAGGACTGCCAGGAGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACTGTGTCTGTGACGGACTGGAGCACTAGGACTGCCAGGAGTCG  550

seq1  GTCGGTCAGAGGAGTGGACGCAGCATCTCAGTTCTCAAGCCTTAATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCAGAGGAGTGGACGCAGCATCTCAGTTCTCAAGCCTTAATGATG  600

seq1  GGAAAGAGCTTTCGCGTGCCAAGGACGGGGTCTTCAGCTCCTCAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGCTTTCGCGTGCCAAGGACGGGGTCTTCAGCTCCTCAGAGGAA  650

seq1  GGAGAGTTGCCGTTGCCCAACAATAACCTGCTCACAGCAAGATTCTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTGCCGTTGCCCAACAATAACCTGCTCACAGCAAGATTCTCACC  700

seq1  TTGAATTGTAC-TTTTGACCCTGTCGTCATCAGCGTCTGTAGCCCACATA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGTACTTTTTGACCCTGTCGTCATCAGCGTCTGTAGCCCACATA  750

seq1  CTCCACTTACAAACTTGTACCCAAAAGAAGGTTCTGTTATCATTTAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTACAAACTTGTACCCAAAAGAAGGTTCTGTTATCATTTAAACA  800

seq1  TCTTCTCTCTCTCTCTTCCTTCCTTCC-TTTCTTTGTTCCTTTCTTTCCT  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTCTCTCTCTCTCTTCCTTCCTTCCTTTTCTTTGTTCCTTTCTTTCCT  850

seq1  TCTTTCTTTCTTTTGCCCTCTCCCTCTTTCTTTCTTTCTTTCTTCCTTTC  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTTCTTTCTTTTGCCCTCTCCCTCTTTCTTTCTTTCTTTCTTCC-TTC  899

seq1  TTTCTTT-CTTTCT--TTCTTTCTTTCTTT-CTTTTTTCTTTCTCTTGTT  944
      ||||||| ||||||  ||| |||||||||| |||||||| ||| || || 
seq2  TTTCTTTCCTTTCTTCTTCCTTCTTTCTTTCCTTTTTTCCTTC-CTGGTC  948

seq1  CATTCTTTCCATTATAAATA-CATGATTT--CCCCCTTCCCTCTCCTCCC  991
      |||||||||||||||||||| ||||||||  |||| ||||||||||||| 
seq2  CATTCTTTCCATTATAAATACCATGATTTTCCCCCTTTCCCTCTCCTCCT  998

seq1  TA-GAAACCC-TCCAATATACCT---GTTC--TTGTTC-TTTTTCAAA-T  1032
      || ||||||| ||||||||||||   ||||  | |||| ||||||||| |
seq2  TAGGAAACCCTTCCAATATACCTCTGGTTCCTTGGTTCTTTTTTCAAATT  1048

seq1  TCATGG  1038
      ||||||
seq2  TCATGG  1054


seq1: chr1_189253554_189253877
seq2: B6Ng01-200A06.g_72_395 (reverse)

seq1  TCTCTCTCCCCTCCCCCTCATTCCCTGTGTGTGTCTTCGTCATTGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCCTCCCCCTCATTCCCTGTGTGTGTCTTCGTCATTGTGTAT  50

seq1  TTACCTTCTGTTGTGACACAAAGATAACAGTTTTCTGAATAAAACTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTGTTGTGACACAAAGATAACAGTTTTCTGAATAAAACTAAAG  100

seq1  ACAGGAACATGACTAGGGAATGTTGGAAAAAGGACAACAAGATTTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACATGACTAGGGAATGTTGGAAAAAGGACAACAAGATTTTATTG  150

seq1  CTTTGGTGTGTGCATGTGCATGTGCGTGTGCATGTGCGTGTGTGTGTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTGTGCATGTGCATGTGCGTGTGCATGTGCGTGTGTGTGTGCG  200

seq1  TGTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGCATGT  250

seq1  ACATTTACATTGTGTGCATTTGTTCATACTTGAGGGTTCCAGAAGACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACATTGTGTGCATTTGTTCATACTTGAGGGTTCCAGAAGACATC  300

seq1  AGATATCCTCTAGTCCCATACCTG  324
      ||||||||||||||||||||||||
seq2  AGATATCCTCTAGTCCCATACCTG  324


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