BAC Information

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BAC

Clone NameB6Ng01-200H11
Chromosome1 (Build37)
Map Location 50,815,213 - 50,816,317
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H11.bB6Ng01-200H11.g
ACCGA021518GA021519
length1,1161,184
definitionB6Ng01-200H11.b B6Ng01-200H11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggtatgatttatggaataaatagagagcaagtatacaagtca
gtatgtcattgaatgacgtaaattttaatgtgtatgtgtgttttacctgc
atgtatgtctgtgtatcacatgtaaacctggtgttcaaagacatcagaaa
tggtaatgtgatacactactactgaagttatagatggttgtgagttgcca
tatgggtgctgggaatcaaatctaggtcgtctggaatattagctagtgct
cttagtcactgaatcctttctctagacttaactaagcagtggaatttcag
tattactaaaaaattcacagaacaacttaaatatataatacaatatcact
tcttataaataggaaaatataaatataatatgaaggtaattactactaat
ctggctttttacatgtgtacaccatatgtgcagcatttataaaatctaag
ttgatattcagaattaacaataaatgcatttgataaaataaattcttaaa
agatttttaaataagccataaaagtaaattttaaatgtatactttcatta
caagtgagtattcacaaatattggggtattagagttatatcccaggcatg
aaaatatattatatcaatgaaaagataaacaaaaatgaatgctagatgaa
gaagcaatatgtgaaagcttgggaaatggcactaaatggatataggaaga
ttgagacattcccagcatacattcctagtggggacattattgccctcaag
aggccaaaattgatttgcaataagacgtgagaaaagtaaaatgtctctga
tctttcaatgatttatggtccttcaaagttgaactataactgatacgtct
cttgttaattaatatttaattctttttatttaagtaggtaatatatttta
aactagttaaaattaaagtggattgtcccagtaggaaaatgataatggaa
acagatgagaaattaagagtttaaagatgcaaaagaatcttgaaaaaaaa
atgccagaactatgcttttccctattttgttaccaatttagtagttaatg
gatttcaggcaaaacatttatttagcttattccttgaaagatgaaacaat
cgatattgaaatgtac
gaattcctgatatctccaatacttttgacatgaagggggattgtattttg
tcaaaatttttttctgcatctaaggagatgatcatgtgatttttttttct
ttaagtttgttcatatagtggactattttaattattggattttcagatat
tgtaccaatcttgcattactgaagcctacttgatcatgctgaatgatgat
tttgatgtgttcttgaattcagtttgcaagaattttgttgagtatttttt
gcatcgatattcataagcaagattgttctgaagttctctttctttgctgg
gtctttgtgttgtttaggtgtcagagtaattttggcttcacagaatgaat
tatgtaatgttccttctgtttctaattttatagatagtttgagaaatatt
tgtgtcagtccttctttgaaggtctggtagaattctgcactaaattcatc
tgatcctggacttttttggttgggagttttttaataactttttctatttc
cttgtggaatatggacctgtttatatactttaaagaatggctgggggaat
caccattcctggcctcaagctctactacagagcaatagtgatttaaaaat
gaaaaaacaaacaaacaaaccaaaactgcatggtattggtacagagagag
acatgttgatcaatggaatagaattgaagacacagaaataaaaccacatt
tgatctttgacaaagtgctaaaaatatacaatggaaaaaaaagcatcttc
actaaatggagctactctaactggctggctgtagtagacaaatgaaaata
gacccatatttgtgatctttgtacaatgctcaagtgctagtgaatccatg
acttccaacataaaaccagataaactgaatataatagaaaagaaagtggg
aaagagccttgagctcattgtaacaagggggatattcctaacagaatgct
cagtgactcatgctctagatacatggacctcataaaactggaagtttctg
ttattcaaggatagtgtcataagaacaatcagaacctacaaattggaaaa
aacttacttaccccacacctgattgaggctatatcccaaaaattaagact
ccagagctaatcctaaaaaagtccaaatcgagttagtaccttatcagatt
cccacaagatctgggaatttctgagatgagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50815213_50816317
seq2: B6Ng01-200H11.b_45_1160 (reverse)

seq1  GTACATT--CATATCGA-TGTTTCATCTTTCAAGGA--TAGCTAAATAAA  45
      |||||||   ||||||| ||||||||||||||||||   |||||||||||
seq2  GTACATTTCAATATCGATTGTTTCATCTTTCAAGGAATAAGCTAAATAAA  50

seq1  TGTTTTTGCCTTGAATTCATT-ACTACTAGATTTGTAACAA---ATGGGA  91
      || ||||||||  ||| |||| ||||||| ||| |||||||   | || |
seq2  TG-TTTTGCCTGAAATCCATTAACTACTAAATTGGTAACAAAATAGGGAA  99

seq1  AAGCATAGTTCTGGCATTTTTTTTTCAAGATTTCTTTTGCATCTTT-AAC  140
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AAGCATAGTTCTGGCATTTTTTTTTCAAGA-TTCTTTTGCATCTTTAAAC  148

seq1  TCTT-ATTTCTCAATCTGTTTTCATTATCATTTTCCTACTGGGACAATCC  189
      |||| ||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TCTTAATTTCTC-ATCTGTTTCCATTATCATTTTCCTACTGGGACAATCC  197

seq1  ACTTTAA-TTTAACTAG-TTAAAATATATTACCTACTT-AATTAAAAGAA  236
      ||||||| ||||||||| |||||||||||||||||||| ||| |||||||
seq2  ACTTTAATTTTAACTAGTTTAAAATATATTACCTACTTAAATAAAAAGAA  247

seq1  TTAAATATTAATTAACAAGAGACGTATCAGTTATAGTTCAACTTTGAAGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTAATTAACAAGAGACGTATCAGTTATAGTTCAACTTTGAAGG  297

seq1  ACCATAAATCATTGAAAGATCAGAGACATTTTACTTTTCTCACGTCTTAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAATCATTGAAAGATCAGAGACATTTTACTTTTCTCACGTCTTAT  347

seq1  TGCAAATCAATTTTGGCCTCTTGAGGGCAATAATGTCCCCACTAGGAATG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCAATTTTGGCCTCTTGAGGGCAATAATGTCCCCACTAGGAATG  397

seq1  TATGCTGGGAATGTCTCAATCTTCCTATATCCATTTAGTGCCATTTCCCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGGAATGTCTCAATCTTCCTATATCCATTTAGTGCCATTTCCCA  447

seq1  AGCTTTCACATATTGCTTCTTCATCTAGCATTCATTTTTGTTTATCTTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCACATATTGCTTCTTCATCTAGCATTCATTTTTGTTTATCTTTT  497

seq1  CATTGATATAATATATTTTCATGCCTGGGATATAACTCTAATACCCCAAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATAATATATTTTCATGCCTGGGATATAACTCTAATACCCCAAT  547

seq1  ATTTGTGAATACTCACTTGTAATGAAAGTATACATTTAAAATTTACTTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAATACTCACTTGTAATGAAAGTATACATTTAAAATTTACTTTT  597

seq1  ATGGCTTATTTAAAAATCTTTTAAGAATTTATTTTATCAAATGCATTTAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTATTTAAAAATCTTTTAAGAATTTATTTTATCAAATGCATTTAT  647

seq1  TGTTAATTCTGAATATCAACTTAGATTTTATAAATGCTGCACATATGGTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTCTGAATATCAACTTAGATTTTATAAATGCTGCACATATGGTG  697

seq1  TACACATGTAAAAAGCCAGATTAGTAGTAATTACCTTCATATTATATTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTAAAAAGCCAGATTAGTAGTAATTACCTTCATATTATATTTA  747

seq1  TATTTTCCTATTTATAAGAAGTGATATTGTATTATATATTTAAGTTGTTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTATTTATAAGAAGTGATATTGTATTATATATTTAAGTTGTTC  797

seq1  TGTGAATTTTTTAGTAATACTGAAATTCCACTGCTTAGTTAAGTCTAGAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTTTTAGTAATACTGAAATTCCACTGCTTAGTTAAGTCTAGAG  847

seq1  AAAGGATTCAGTGACTAAGAGCACTAGCTAATATTCCAGACGACCTAGAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTCAGTGACTAAGAGCACTAGCTAATATTCCAGACGACCTAGAT  897

seq1  TTGATTCCCAGCACCCATATGGCAACTCACAACCATCTATAACTTCAGTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCCAGCACCCATATGGCAACTCACAACCATCTATAACTTCAGTA  947

seq1  GTAGTGTATCACATTACCATTTCTGATGTCTTTGAACACCAGGTTTACAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTATCACATTACCATTTCTGATGTCTTTGAACACCAGGTTTACAT  997

seq1  GTGATACACAGACATACATGCAGGTAAAACACACATACACATTAAAATTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACACAGACATACATGCAGGTAAAACACACATACACATTAAAATTT  1047

seq1  ACGTCATTCAATGACATACTGACTTGTATACTTGCTCTCTATTTATTCCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCATTCAATGACATACTGACTTGTATACTTGCTCTCTATTTATTCCA  1097

seq1  TAAATCATACCAAGAATTC  1105
      |||||||||||||||||||
seq2  TAAATCATACCAAGAATTC  1116