BAC Information

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BAC

Clone NameB6Ng01-200M19
Chromosome1 (Build37)
Map Location 65,747,874 - 65,871,684
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200M19.bB6Ng01-200M19.g
ACCGA021758GA021759
length6351,074
definitionB6Ng01-200M19.b B6Ng01-200M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,747,874 - 65,748,508)(65,870,630 - 65,871,684)
sequence
gaattctcatgatccaatcacatcctaaagattgcacctgttaaaaactt
acaaaggatttttaaacaccagctcttttttaaaaaaatttttattaggt
attttcctcatttacatttccaatgctatccaaaaagtcccccataccct
ccccaccattcccctacccacccactcccactttttggccctggcgttcc
cctgtactagggcatataaagtttgcaagtccaatgggcctctctttgca
gtgatggccgactaggccatcttttgatacatatgcagctaaagacaaga
gctcccgggtactggttagttcatattgttgttccacctatagggttgca
gatccctttagctccttgggtactttctctagttcctccactgggagcct
tgtgatccatccaatagctgactgtgaggatccacttctgtaaacacagg
ctcttaaatcacattggacacaaatgcatgcatagtaccatatacaaata
tatgtaaaaagcatatcttcctggaaaaataattccatttatatagtata
aatggaaggagacatccatcataagataatttataggaagataaggctat
atacataaaattaaataactctaatttttacttac
gaattctttaaacaaatgtgaatacagaaacaagacaacttgttaggata
gctgattccagtatatctgggccagaaatttacagttatgtcagaaatgg
cttaattctcaaaaactaaggctgttctggaagatacccaaaatggtctg
aaaaagagctaattggaaatagagaagccagtaattctatagaggaaata
tatcacgtgtgcttaaagcccacaaatcacaaagagctgaatcaaatatt
cattgtcacctttaaacagctgaagagtagacttgttactttgaaaatta
agataggcagcagtgagcacaggcattctccttgcttttcctgttcacac
agtgctcagggatagttggtacaagcttttatttttaactatgtatggga
aagaatggatacaatttggatatgtcaccttacagggacaaaggaaacat
agatctaggctcattgattactaagaaaaaatgacaaaggaattcatcat
agattggccaagcttataacatccaacacaatgtcaatcatagcacttat
aaagatagctgtgttgggtatgaaataatacttgttggaagtatacaaca
ctgcctacaaaatagtaatgcaaagagtaacactggaatctagacaaacc
tctacattgatcattgttcactagaatcttctgtgataatgcacatgcca
tatccctatgatactcaaagcagcaaccctgaccacattcactattctca
cttgttaaagtagtagggtgcctatgaaccaaggacttttcttagattta
tttattaataatatattatgattgtttcaccctacatatatttatatgta
gtatgtggtgaaccctcatattcattggaggtcattggaggtcacaataa
tccattgggtctccttggaaactggagtaacatggtttgagttacctttc
ttgggtgctaggaaccaggtctatgtcttcttgcaagggcaaccaggtgt
tcttcaactacctgaagtactctcttccaggtctcggggcacccatgcac
tttttgaaatatgatttactcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65747874_65748508
seq2: B6Ng01-200M19.b_48_682

seq1  GAATTCTCATGATCCAATCACATCCTAAAGATTGCACCTGTTAAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGATCCAATCACATCCTAAAGATTGCACCTGTTAAAAACTT  50

seq1  ACAAAGGATTTTTAAACACCAGCTCTTTTTTAAAAAAATTTTTATTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATTTTTAAACACCAGCTCTTTTTTAAAAAAATTTTTATTAGGT  100

seq1  ATTTTCCTCATTTACATTTCCAATGCTATCCAAAAAGTCCCCCATACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCATTTACATTTCCAATGCTATCCAAAAAGTCCCCCATACCCT  150

seq1  CCCCACCATTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCATTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCC  200

seq1  CCTGTACTAGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTAGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  250

seq1  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGA  300

seq1  GCTCCCGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCA  350

seq1  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGTTCCTCCACTGGGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGTTCCTCCACTGGGAGCCT  400

seq1  TGTGATCCATCCAATAGCTGACTGTGAGGATCCACTTCTGTAAACACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCATCCAATAGCTGACTGTGAGGATCCACTTCTGTAAACACAGG  450

seq1  CTCTTAAATCACATTGGACACAAATGCATGCATAGTACCATATACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAATCACATTGGACACAAATGCATGCATAGTACCATATACAAATA  500

seq1  TATGTAAAAAGCATATCTTCCTGGAAAAATAATTCCATTTATATAGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAAAGCATATCTTCCTGGAAAAATAATTCCATTTATATAGTATA  550

seq1  AATGGAAGGAGACATCCATCATAAGATAATTTATAGGAAGAAAAGGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATGGAAGGAGACATCCATCATAAGATAATTTATAGGAAGATAAGGCTAT  600

seq1  ATACAT-AAATTAAATAACTTCTAATTTTTACTTAC  635
      |||||| |||||||||||| ||||||||||||||||
seq2  ATACATAAAATTAAATAAC-TCTAATTTTTACTTAC  635

seq1: chr1_65870630_65871684
seq2: B6Ng01-200M19.g_68_1141 (reverse)

seq1  AAAGAGTAAATCATATTT--AAAAATGCAT-GATTCACCGAGACTAG--A  45
      ||||||||||||||||||  |||| ||||| | | | |||||||  |  |
seq2  AAAGAGTAAATCATATTTCAAAAAGTGCATGGGTGCCCCGAGACCTGGAA  50

seq1  GAGA-TACCTCA-GTAGTTG-AGAACA-CTTGTTGCCCTTGC-AGAAGAC  90
      |||| ||| ||| ||||||| |||||| || ||||||||||| |||||||
seq2  GAGAGTACTTCAGGTAGTTGAAGAACACCTGGTTGCCCTTGCAAGAAGAC  100

seq1  ATGGACTTGGTTCCTAGCA-CCAAG-AAGGTAACTCAAAACCATGTTACT  138
      || ||| |||||||||||| ||||| |||||||||| |||||||||||||
seq2  ATAGACCTGGTTCCTAGCACCCAAGAAAGGTAACTC-AAACCATGTTACT  149

seq1  CCAG-TTCCAAGG-GACCCAGTGGATTCTTGTGACCTCCAATGACCTCCA  186
      |||| |||||||| |||||| |||||| ||||||||||||||||||||||
seq2  CCAGTTTCCAAGGAGACCCAATGGATTATTGTGACCTCCAATGACCTCCA  199

seq1  ATG-ATATGA-GGTTCA-CACATACTACATATAAATATATGTA-GGTGAA  232
      ||| |||||| |||||| ||||||||||||||||||||||||| ||||||
seq2  ATGAATATGAGGGTTCACCACATACTACATATAAATATATGTAGGGTGAA  249

seq1  ACAATCAT-ATATATTAATTAAATAAATAAATCTAAGAAAAGTCCTT-GT  280
      |||||||| ||||||||  | |||||||||||||||||||||||||| ||
seq2  ACAATCATAATATATTA--TTAATAAATAAATCTAAGAAAAGTCCTTGGT  297

seq1  TCATAGGCA-CCTACTACTTT-ACAAGTGAGAATAGTGAATGTGGTCAGG  328
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TCATAGGCACCCTACTACTTTAACAAGTGAGAATAGTGAATGTGGTCAGG  347

seq1  GTTGCTGCTTTGAGTATCATAGGGATATGGCATGTGCATTATCACAGAAG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGCTTTGAGTATCATAGGGATATGGCATGTGCATTATCACAGAAG  397

seq1  ATTCTAGTGAACAATGATCAATGTAGAGGTTTGTCTAGATTCCAGTGTTA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTGAACAATGATCAATGTAGAGGTTTGTCTAGATTCCAGTGTTA  447

seq1  CTCTTTGCATTACTATTTTGTAGGCAGTGTTGTATACTTCCAACAAGTAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCATTACTATTTTGTAGGCAGTGTTGTATACTTCCAACAAGTAT  497

seq1  TATTTCATACCCAACACAGCTATCTTTATAAGTGCTATGATTGACATTGT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATACCCAACACAGCTATCTTTATAAGTGCTATGATTGACATTGT  547

seq1  GTTGGATGTTATAAGCTTGGCCAATCTATGATGAATTCCTTTGTCATTTT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGTTATAAGCTTGGCCAATCTATGATGAATTCCTTTGTCATTTT  597

seq1  TTCTTAGTAATCAATGAGCCTAGATCTATGTTTCCTTTGTCCCTGTAAGG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTAATCAATGAGCCTAGATCTATGTTTCCTTTGTCCCTGTAAGG  647

seq1  TGACATATCCAAATTGTATCCATTCTTTCCCATACATAGTTAAAAATAAA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCCAAATTGTATCCATTCTTTCCCATACATAGTTAAAAATAAA  697

seq1  AGCTTGTACCAACTATCCCTGAGCACTGTGTGAACAGGAAAAGCAAGGAG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTACCAACTATCCCTGAGCACTGTGTGAACAGGAAAAGCAAGGAG  747

seq1  AATGCCTGTGCTCACTGCTGCCTATCTTAATTTTCAAAGTAACAAGTCTA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGTGCTCACTGCTGCCTATCTTAATTTTCAAAGTAACAAGTCTA  797

seq1  CTCTTCAGCTGTTTAAAGGTGACAATGAATATTTGATTCAGCTCTTTGTG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGCTGTTTAAAGGTGACAATGAATATTTGATTCAGCTCTTTGTG  847

seq1  ATTTGTGGGCTTTAAGCACACGTGATATATTTCCTCTATAGAATTACTGG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGGCTTTAAGCACACGTGATATATTTCCTCTATAGAATTACTGG  897

seq1  CTTCTCTATTTCCAATTAGCTCTTTTTCAGACCATTTTGGGTATCTTCCA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATTTCCAATTAGCTCTTTTTCAGACCATTTTGGGTATCTTCCA  947

seq1  GAACAGCCTTAGTTTTTGAGAATTAAGCCATTTCTGACATAACTGTAAAT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCTTAGTTTTTGAGAATTAAGCCATTTCTGACATAACTGTAAAT  997

seq1  TTCTGGCCCAGATATACTGGAATCAGCTATCCTAACAAGTTGTCTTGTTT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCCAGATATACTGGAATCAGCTATCCTAACAAGTTGTCTTGTTT  1047

seq1  CTGTATTCACATTTGTTTAAAGAATTC  1055
      |||||||||||||||||||||||||||
seq2  CTGTATTCACATTTGTTTAAAGAATTC  1074