BAC Information

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BAC

Clone NameB6Ng01-200N03
Chromosome1 (Build37)
Map Location 64,928,405 - 65,168,693
singlet/doubletdoublet
Overlap gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik
Upstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5
Downstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N03.bB6Ng01-200N03.g
ACCGA021773GA021774
length1,1531,046
definitionB6Ng01-200N03.b B6Ng01-200N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,167,545 - 65,168,693)(64,928,405 - 64,929,425)
sequence
gaattctggaatagccatgactcatagagaccctatctcaaaaaaaaaaa
aaaaaaaaaaaaaaaaaagaatgaatggataacatgtaaataagtgagta
agtaagtaaataaatgaataaatgagtgaataaatattttcttgctgcac
atgctatcttctgtgtgtgtatgttagtgactaatgctagtgtgttctgt
gggaaattttacaaaaaaatgtacgctttattgtcatggcctgttcttag
agtacaaatacccgtaagagatgtgactgcttctatctcctgagtgtttg
gattaaaggtgtgcaccaccatgcctggcaggaaatcttttattttatgc
aatggcttttagccctcctcttgcaaaaatcttttctgtatgttggcatt
ttgaatccttcctttttttttaaactgtaaattattctaacaatgtgtct
aattttaagataaatgtgatttaagttcattgtgattactgtattttaaa
cctgcagcctttggagatcactatgtaagccaaatttggatgttaatagc
aactaggccatgagtgacttctgttgcatttttgtcttgggggtgtgcag
gggcagcaggaagaaagcctctttctgaggatggaaccctatgtcgcccc
caagagtttaatgctgctctcttgcttttcaggggagagtatatcggaat
cagacttcgggaaaatgaatttgatcctaaaggaagaggccaactcacct
ttctagatgatatggtaaaccaagtcacgctggtgcgattcccattgcat
tctgtatgtaataaggggagaggataggtatcaaatgtatatgtaactga
catacacacacaaacacacagacacacagacacacagacacacacacact
gcgtgagcgcgtgcacatgcatgcatgcatacacacaccctgtccccttc
caatgcttttctcatcctgtggttgtctctatgatcatctcacccactaa
atagacacacgaaattgagaatggagaaaaatagcatagtttcagaaaag
attttaaaccaaacgactgccagaataaaaattaattccaaatggtaagg
cccttggaaaaattagacaatatgggagtttctcaacctctagacttacc
atc
gaattcaactgtccttcaaggacagtcctgagaaatttttgagatgtatt
tattttttaattaatgagtatggatgttttgcatgcatggacaccatgtg
cgtgaacagcccatcagaagagggcataggatggcctggaagtggggtta
cagaaagttgtcagctgccatgttggatgagtcaaaccctctggaacaca
agtaagtgcttttgactgctgagccacccttaggcccccaggaaagttct
gagcttctaaattaaaatctgtctagcttctatgaaggaaagtctctact
gctttcaagaaaaacatctaggtgactgggtggaaagcactctgctccat
gatctgcttcttcattattatttcataagagctcatttgcatagcatgta
cctttcactacctatagttaatgctttctagaatgtcttcttcagatgcc
tggggtcatgtcagtttctttggatctaactgaatttgaagttgtaaact
ctattgttttgattctttccaaaggctcttatccaggtgggcttccagaa
acatttactatgattaatatatgctgatggtcatttctattaaaatgaaa
aaaaatcaaaaggtatttcagggacttatgcaagccaccaacaattactt
caagtataaactggttcgtatatgccaaaggtgagaatttaactgctcat
aataaacaactgtaaaataaggaattttgtaagagcgagcacatttgaac
tgcattttaaggatctgagtttggcttggtttttgtgtgttctgtgaact
atgaactgacttcagttacaggaagagagcagccctgcaccaagcgcaag
gtgaaaggcaaacgcctggggctgtgtgcttttagttgccatgcttttct
ctctgcagctagttaatcaagtttagtaatattgtttttggtttacagaa
aaagaaaaaggatttggaatagtcaatttgcattttttttccccattaaa
gtaacttttcagttgggaaatattcaggcctgcctcctgtgcttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65167545_65168693
seq2: B6Ng01-200N03.b_47_1199 (reverse)

seq1  GATGGTAAGTGCTTAGA-GTTGAG-AACTACACTATTG-CTAATTTTGTC  47
      ||||||||||   |||| |||||| |||| |  ||||| ||||||||  |
seq2  GATGGTAAGT--CTAGAGGTTGAGAAACTCCCATATTGTCTAATTTTTCC  48

seq1  AAGGG-CTTACCATTTTGAATTAATTTTTTATCTTGCAGTCGTTGGTTTT  96
      ||||| |||||||||| ||||||||||||  ||| ||||||||| | |||
seq2  AAGGGCCTTACCATTTGGAATTAATTTTTATTCTGGCAGTCGTTTGGTTT  98

seq1  AAAATCTTTTCT-TGACTATGCTTATTTTCT-CATTCTC-ATTTCGTGT-  142
      ||||||||||||   ||||||||  |||||| ||||||| ||||||||| 
seq2  AAAATCTTTTCTGAAACTATGCTATTTTTCTCCATTCTCAATTTCGTGTG  148

seq1  CCTATTTAGTGGGTGAAGATGATCATAGAGACAACCACAGGATGAGAAAA  192
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTATTTAGTGGGTG-AGATGATCATAGAGACAACCACAGGATGAGAAAA  197

seq1  GCATTAGGAAGGGGACAGGGTGTGTGTATGCATGCATGCATGTGCACGCG  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATT-GGAAGGGGACAGGGTGTGTGTATGCATGCATGCATGTGCACGCG  246

seq1  CTCACGCATGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTTTGTG  292
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCA-GTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTTTGTG  295

seq1  TGTGTATGTCAGTTACATATACATTTGATACCTATCCTCTCCCCTTATTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTCAGTTACATATACATTTGATACCTATCCTCTCCCCTTATTA  345

seq1  CATACAGAATGCAATGGGAATCGCACCAGCGTGACTTGGTTTACCATATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAATGCAATGGGAATCGCACCAGCGTGACTTGGTTTACCATATC  395

seq1  ATCTAGAAAGGTGAGTTGGCCTCTTCCTTTAGGATCAAATTCATTTTCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAGGTGAGTTGGCCTCTTCCTTTAGGATCAAATTCATTTTCCC  445

seq1  GAAGTCTGATTCCGATATACTCTCCCCTGAAAAGCAAGAGAGCAGCATTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGATTCCGATATACTCTCCCCTGAAAAGCAAGAGAGCAGCATTA  495

seq1  AACTCTTGGGGGCGACATAGGGTTCCATCCTCAGAAAGAGGCTTTCTTCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGGGGGCGACATAGGGTTCCATCCTCAGAAAGAGGCTTTCTTCC  545

seq1  TGCTGCCCCTGCACACCCCCAAGACAAAAATGCAACAGAAGTCACTCATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCCTGCACACCCCCAAGACAAAAATGCAACAGAAGTCACTCATG  595

seq1  GCCTAGTTGCTATTAACATCCAAATTTGGCTTACATAGTGATCTCCAAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTGCTATTAACATCCAAATTTGGCTTACATAGTGATCTCCAAAG  645

seq1  GCTGCAGGTTTAAAATA-TCTAATCACAATGAACTTAAATCACATTTATC  691
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  GCTGCAGGTTTAAAATACAGTAATCACAATGAACTTAAATCACATTTATC  695

seq1  TTAAAATTAGACACATTGTTAGAATAATTTACAGTTTAAAAAAAAAGGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAGACACATTGTTAGAATAATTTACAGTTTAAAAAAAAAGGAA  745

seq1  GGATTCAAAATGCCAACATACAGAAAAGATTTTTGCAAGAGGAGGGCTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAAATGCCAACATACAGAAAAGATTTTTGCAAGAGGAGGGCTAA  795

seq1  AAGCCATTGCATAAAATAAAAGATTTCCTGCCAGGCATGGTGGTGCACAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGCATAAAATAAAAGATTTCCTGCCAGGCATGGTGGTGCACAC  845

seq1  CTTTAATCCAAACACTCAGGAGATAGAAGCAGTCACATCTCTTACGGGTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCAAACACTCAGGAGATAGAAGCAGTCACATCTCTTACGGGTA  895

seq1  TTTGTACTCTAAGAACAGGCCATGACAATAAAGCGTACATTTTTTTGTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTCTAAGAACAGGCCATGACAATAAAGCGTACATTTTTTTGTAA  945

seq1  AATTTCCCACAGAACACACTAGCATTAGTCACTAACATACACACACAGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCACAGAACACACTAGCATTAGTCACTAACATACACACACAGAA  995

seq1  GATAGCATGTGCAGCAAGAAAATATTTATTCACTCATTTATTCATTTATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATGTGCAGCAAGAAAATATTTATTCACTCATTTATTCATTTATT  1045

seq1  TACTTACTTACTCACTTATTTACATGTTATCCATTCATTCTTTTTTTTTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTACTCACTTATTTACATGTTATCCATTCATTCTTTTTTTTTT  1095

seq1  TTTTTTTTTTTTTTTTTTTGAGATAGGGTCTCTATGAGTCATGGCTATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGAGATAGGGTCTCTATGAGTCATGGCTATTC  1145

seq1  CAGAATTC  1149
      ||||||||
seq2  CAGAATTC  1153

seq1: chr1_64928405_64929425
seq2: B6Ng01-200N03.g_69_1114

seq1  GAATTCAACTGTCCTTCAAGGACAGTCCTGAGAAATTTTTGAGATGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTCCTTCAAGGACAGTCCTGAGAAATTTTTGAGATGTATT  50

seq1  TATTTTTTAATTAATGAGTATGGATGTTTTGCATGCATGGACACCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAATTAATGAGTATGGATGTTTTGCATGCATGGACACCATGTG  100

seq1  CGTGAACAGCCCATCAGAAGAGGGCATAGGATGGCCTGGAAGTGGGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACAGCCCATCAGAAGAGGGCATAGGATGGCCTGGAAGTGGGGTTA  150

seq1  CAGAAAGTTGTCAGCTGCCATGTTGGATGAGTCAAACCCTCTGGAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTGTCAGCTGCCATGTTGGATGAGTCAAACCCTCTGGAACACA  200

seq1  AGTAAGTGCTTTTGACTGCTGAGCCACCCTTAGGCCCCCAGGAAAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGCTTTTGACTGCTGAGCCACCCTTAGGCCCCCAGGAAAGTTCT  250

seq1  GAGCTTCTAAATTAAAATCTGTCTAGCTTCTATGAAGGAAAGTCTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTAAATTAAAATCTGTCTAGCTTCTATGAAGGAAAGTCTCTACT  300

seq1  GCTTTCAAGAAAAACATCTAGGTGACTGGGTGGAAAGCACTCTGCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGAAAAACATCTAGGTGACTGGGTGGAAAGCACTCTGCTCCAT  350

seq1  GATCTGCTTCTTCATTATTATTTCATAAGAGCTCATTTGCATAGCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTCTTCATTATTATTTCATAAGAGCTCATTTGCATAGCATGTA  400

seq1  CCTTTCACTACCTATAGTTAATGCTTTCTAGAATGTCTTCTTCAGATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACTACCTATAGTTAATGCTTTCTAGAATGTCTTCTTCAGATGCC  450

seq1  TGGGGTCATGTCAGTTTCTTTGGATCTAACTGAATTTGAAGTTGTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCATGTCAGTTTCTTTGGATCTAACTGAATTTGAAGTTGTAAACT  500

seq1  CTATTGTTTTGATTCTTTCCAAAGGCTCTTATCCAGGTGGGCTTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTTGATTCTTTCCAAAGGCTCTTATCCAGGTGGGCTTCCAGAA  550

seq1  ACATTTACTATGATTAATATATGCTGATGGTCATTTCTATTAAAATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACTATGATTAATATATGCTGATGGTCATTTCTATTAAAATGAAA  600

seq1  AAAAATCAAAAGGTATTTCAGGGACTTATGCAAGCCACCAACAATTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAAGGTATTTCAGGGACTTATGCAAGCCACCAACAATTACTT  650

seq1  CAAGTATAAACTGGTTCGTATATGCCAAAGGTGAGAATTTAACTGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAAACTGGTTCGTATATGCCAAAGGTGAGAATTTAACTGCTCAT  700

seq1  AATAAACAACTGTAAAATAAGGAATTTTGTAAGAGCGAGCACATTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAACTGTAAAATAAGGAATTTTGTAAGAGCGAGCACATTTGAAC  750

seq1  TGCATTTTAAGGATCTGAGTTTGGCTTGG-TTTTGTGTGTTCTGTGAACT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCATTTTAAGGATCTGAGTTTGGCTTGGTTTTTGTGTGTTCTGTGAACT  800

seq1  ATGAACTGAC-TCAGTTACAGGAAGAGAGCAG-CCTGCACCAAGCGCAAG  847
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  ATGAACTGACTTCAGTTACAGGAAGAGAGCAGCCCTGCACCAAGCGCAAG  850

seq1  GTGAAAGGCAAACGCCT-GGGCTGTGTGC-TTTAG-TGCCATGCTTTCCT  894
      ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
seq2  GTGAAAGGCAAACGCCTGGGGCTGTGTGCTTTTAGTTGCCATGCTTTTCT  900

seq1  C-CTGCAGC-AGTT-ATCAAG-TTAGT-ATAT--GTTTTGG--TACAGAA  935
      | ||||||| |||| |||||| ||||| ||||   ||||||  |||||||
seq2  CTCTGCAGCTAGTTAATCAAGTTTAGTAATATTGTTTTTGGTTTACAGAA  950

seq1  AAAGAAAA--GATTT-GAATAGTC-ATTTGCATTTTTT---CCCATTAAA  978
      ||||||||  ||||| |||||||| |||||||||||||   |||||||||
seq2  AAAGAAAAAGGATTTGGAATAGTCAATTTGCATTTTTTTTCCCCATTAAA  1000

seq1  GT-ACTTTTCAGTTGTGAAATATTTCAGGCCTG-CTCC--TGCTTAC  1021
      || |||||||||||| |||||| |||||||||| ||||  |||||||
seq2  GTAACTTTTCAGTTGGGAAATA-TTCAGGCCTGCCTCCTGTGCTTAC  1046