BAC Information

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BAC

Clone NameB6Ng01-200P17
Chromosome1 (Build37)
Map Location 88,982,273 - 89,159,844
singlet/doubletdoublet
Overlap geneAkp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2
Upstream genePsmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256
Downstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P17.bB6Ng01-200P17.g
ACCGA021883GA021884
length110118
definitionB6Ng01-200P17.b B6Ng01-200P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,982,273 - 88,982,382)(89,159,727 - 89,159,844)
sequence
caggctctaaccactccgtgcagtgcccccacagggttttctatgagtcc
ctgcaatcagggaactccccactccagggtagagtattgtggaaggacac
ccttcccccc
cagggtaggaagccagcctggggttcacagcaagacccgctgcttcgctg
cttcggaacaaagcaaacaagaaattaacacaagaaattaacgggggaag
ggttagggggaaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88982273_88982382
seq2: B6Ng01-200P17.b_51_160

seq1  CAGGCTCTAACCACTCCGTGCAGTGCCCCCACAGGGTTTTCTATGAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTAACCACTCCGTGCAGTGCCCCCACAGGGTTTTCTATGAGTCC  50

seq1  CTGCAATCAGGGAACTCCCCACTCCAGGGTAGAGTATTGTGGAAGGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATCAGGGAACTCCCCACTCCAGGGTAGAGTATTGTGGAAGGACAC  100

seq1  CCTTCCCCCC  110
      ||||||||||
seq2  CCTTCCCCCC  110

seq1: chr1_89159727_89159844
seq2: B6Ng01-200P17.g_70_187 (reverse)

seq1  TCCCCCTTCCCCCTAACCCTTCCCCCGTTAATTTCTTGTGTTAATTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCCCCCTAACCCTTCCCCCGTTAATTTCTTGTGTTAATTTCTT  50

seq1  GTTTGCTTTGTTCCGAAGCAGCGAAGCAGCGGGTCTTGCTGTGAACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTGTTCCGAAGCAGCGAAGCAGCGGGTCTTGCTGTGAACCCCA  100

seq1  GGCTGGCTTCCTACCCTG  118
      ||||||||||||||||||
seq2  GGCTGGCTTCCTACCCTG  118