BAC Information

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BAC

Clone NameB6Ng01-201G24
Chromosome1 (Build37)
Map Location 155,310,119 - 155,311,116
singlet/doubletsinglet
Overlap geneDhx9
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik
Downstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201G24.bB6Ng01-201G24.g
ACCGA022211GA022212
length1,0151,074
definitionB6Ng01-201G24.b B6Ng01-201G24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaacataataaacttaaaagactagcctagtggtgcaatctta
tagaccaagctacttagtaggctgaggcagcaggaccacaagttaaaaca
ggatgtgtaatctacagattgacttctagactgtccaaccttgacacccc
ccacccaaaaaatgtacagaaaggactctgtcccaccagaactgtaagct
taaaaacaaaacacacccaaaccaaaatctttactttagcactgttggga
ctatacttcaataattagggacctaattagaatgtgaagactggttttca
aggtggaagtcatccaggtcaaatctgacatcaggaatgatcaatctcac
ggccacttaaaattcacaaataaccttaaaagtagctatagatacttact
actacataactgagattaaaagttaaacttattagggaatcaaatttcac
caacacaaatactaatattgagaaaatgtgtacaacagttataaccaggc
tctttattgtcccctctacaacatttctgtgcactcatttatataatagg
tatatagtcaatgcaacagctcagctcacataggtttacgtcctttgctc
caggctgagttgcactacatgatcaaagctggaagatctcataacactag
gttgtagggttttatcttctgaaagtagtaccctcatgtcaactgtctca
tgctaagtaagaattgtatttatacaaaaaacagcatgaaaaatttcagg
tagcaaacaaccaatgggatgaccaaataaaagatcccatgataatgaga
agtcagaagttagaagtaaattttggcttatatactaaacctggtaaata
tttcttaatcttaaaatcagtgtattacaaacacattggtgcctgtatgg
gcatataaaagtaaaatttgaccattgaagtttaaaaacctaagtgttga
gagttatgtagggtggttgaaacttattagtatttgagaaagaatagaac
aagttcttgaagggg
gaattctatcccaggtggttcctgttagaccttctgtgttcacattcctc
tgttttatgtaagaatccagtaacctctttgtaccttgctggtgtgtcgc
ccaacttccttatcgtcttctgcataaaaagtctgatgctcgatttgaca
aaatacattcagatccaacacaaaaaataaaaaaagagagatacttgcca
caggtcagaaactccatcgaaccatttgccagatacgtctctcaagtgaa
aacttccagtttctatggaaagttagctatgtcaaatgttgtttcgctgg
ggcacacaggtgaaggatgtcttgctaaagcagacacatgaaagaatgtt
ttcctgaagcagacacgggtgaaaagatattttgatatagcaaatatgtg
aaaagatgcttgatgaaggagtataaatatgaccccacagacagtgggag
atgagcactgagctttggtctggtttgctctgcctcactattctttgcta
acacaacatacggattggttcaccttacatagcgttgttgagttcaactc
gtggtagtgcaccattgagagaaactcacccaagaactgcttgtgaggtt
cctgtggcagcttgctgcttctgtggcctcagctcaggctggttggcaaa
cctagcagttacttcaggactggactgtagctgctggttcatgtctggtg
tctgtctgcctaaaggactggtctgcagctgctgagatcatacatatttg
gtgttttgctatgagactgaactgctaagaatattgagcttgccccccaa
ggaactattgctaaacaggtccatgtcccccatatcctcataaactgttc
tcctctaccacctctgctgggtggtgggcctagcgaggagattgaatcct
tatttaaagtaggtgtcaaaagatgtgtggccttacatgtctccttggaa
gaggtcaccatcacagtagatcatgggttcaattcctgcttcccaatgga
cctttgtttaaattaaaatattcttggcactcctccatccgaaggattgc
cgccatccacggtaagaattgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155310119_155311116
seq2: B6Ng01-201G24.b_46_1060

seq1  GAATTCACAACATAATAAACTTAAAAGACTAGCCTAGTGGTGCAATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACATAATAAACTTAAAAGACTAGCCTAGTGGTGCAATCTTA  50

seq1  TAGACCAAGCTACTTAGTAGGCTGAGGCAGCAGGACCACAAGTTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAGCTACTTAGTAGGCTGAGGCAGCAGGACCACAAGTTAAAACA  100

seq1  GGATGTGTAATCTACAGATTGACTTCTAGACTGTCCAACCTTGACACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTAATCTACAGATTGACTTCTAGACTGTCCAACCTTGACACCCC  150

seq1  CCACCCAAAAAATGTACAGAAAGGACTCTGTCCCACCAGAACTGTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAAAAATGTACAGAAAGGACTCTGTCCCACCAGAACTGTAAGCT  200

seq1  TAAAAACAAAACACACCCAAACCAAAATCTTTACTTTAGCACTGTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACACACCCAAACCAAAATCTTTACTTTAGCACTGTTGGGA  250

seq1  CTATACTTCAATAATTAGGGACCTAATTAGAATGTGAAGACTGGTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTTCAATAATTAGGGACCTAATTAGAATGTGAAGACTGGTTTTCA  300

seq1  AGGTGGAAGTCATCCAGGTCAAATCTGACATCAGGAATGATCAATCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGTCATCCAGGTCAAATCTGACATCAGGAATGATCAATCTCAC  350

seq1  GGCCACTTAAAATTCACAAATAACCTTAAAAGTAGCTATAGATACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTAAAATTCACAAATAACCTTAAAAGTAGCTATAGATACTTACT  400

seq1  ACTACATAACTGAGATTAAAAGTTAAACTTATTAGGGAATCAAATTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAACTGAGATTAAAAGTTAAACTTATTAGGGAATCAAATTTCAC  450

seq1  CAACACAAATACTAATATTGAGAAAATGTGTACAACAGTTATAACCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAATACTAATATTGAGAAAATGTGTACAACAGTTATAACCAGGC  500

seq1  TCTTTATTGTCCCCTCTACAACATTTCTGTGCACTCATTTATATAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGTCCCCTCTACAACATTTCTGTGCACTCATTTATATAATAGG  550

seq1  TATATAGTCAATGCAACAGCTCAGCTCACATAGGTTTACGTCCTTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTCAATGCAACAGCTCAGCTCACATAGGTTTACGTCCTTTGCTC  600

seq1  CAGGCTGAGTTGCACTACATGATCAAAGCTGGAAGATCTCATAACACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGTTGCACTACATGATCAAAGCTGGAAGATCTCATAACACTAG  650

seq1  GTTGTAGGGTTTTATCTTCTGAAAGTAGTACCCTCATGTCAACTGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGGTTTTATCTTCTGAAAGTAGTACCCTCATGTCAACTGTCTCA  700

seq1  TGCTAAGTAAGAATTGTATTTATACAAAAAACAGCATGAAAAA-TTCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTAAGTAAGAATTGTATTTATACAAAAAACAGCATGAAAAATTTCAGG  750

seq1  TAGCAAACAACCAATGGGATGACCAAATAAAAGATCCCATGATAATGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACAACCAATGGGATGACCAAATAAAAGATCCCATGATAATGAGA  800

seq1  AGTCAGAAGTTAGAAGTAAATTTTGGC-TATATACTAAACCTGGTAAATA  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTCAGAAGTTAGAAGTAAATTTTGGCTTATATACTAAACCTGGTAAATA  850

seq1  -TTCTTAATC-TAAAATCAGTGTA-TACAAACACA-TGGTGCCTGTAT-G  893
       ||||||||| ||||||||||||| |||||||||| |||||||||||| |
seq2  TTTCTTAATCTTAAAATCAGTGTATTACAAACACATTGGTGCCTGTATGG  900

seq1  GCATATAAAAGTAAAATTTGA-CAATGAAGTTTAAAAA-CTAGGTG-TGA  940
      ||||||||||||||||||||| || ||||||||||||| ||| ||| |||
seq2  GCATATAAAAGTAAAATTTGACCATTGAAGTTTAAAAACCTAAGTGTTGA  950

seq1  GAG-TATGTA-GGTGTGTGAAACT--ATAGTATTTGAGAAAGAAAAG-AC  985
      ||| |||||| ||||  |||||||   ||||||||||||||||| || ||
seq2  GAGTTATGTAGGGTGGTTGAAACTTATTAGTATTTGAGAAAGAATAGAAC  1000

seq1  AAGT--CTGAAGGGG  998
      ||||   ||||||||
seq2  AAGTTCTTGAAGGGG  1015