BAC Information

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BAC

Clone NameB6Ng01-201J11
Chromosome1 (Build37)
Map Location 81,635,804 - 81,789,398
singlet/doubletdoublet
Overlap geneEG621020, LOC433328
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneEG665145, Irs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201J11.bB6Ng01-201J11.g
ACCGA022323GA022324
length1,1121,026
definitionB6Ng01-201J11.b B6Ng01-201J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,635,804 - 81,636,902)(81,788,366 - 81,789,398)
sequence
gaattctcataaattcctttttctgatgttttattatgttttcttgagac
taggtcttgatacacagcctttggtagccttcaatttgcaatcccctgcc
tctgctccctgaagacagtgatcaaggacatgtgaatccttgtcttctta
catttaaacgcttcataaaatatgtacatttcactgtctgtattacaaag
ctattcatgtgtctgttttaaatatgactggaaaaatgatttgttttact
aaaactctttagtaaatgtatagaaagaagagtaaagagacttcctgtac
aaagcttaaacaaatgggtttcagagcctgtgagataatgagaaagagat
aattagaatgataaatgatctctggtcataacttgtattgacatctctaa
ctatacaaaactatatatagatatagatagatactgatatcaccacataa
caactaacaaagttacttatttccattctcagataaactagatgccctgc
acaatactataacacataaggggacacacacacacacacacacacacaca
caccagctgctcctccccacatgcatgagcaatgttcaagaacagtttac
ctttctgttcctgccttcttattttcccatctactttttgcccactcttc
agttttctcccaatatcctttgttttgtcattaagttatacatggctctg
atctgaacactttcactttttttcttatactttccgttgttggtcttatc
tgacctcatttataatgggtgattattctcacacctatgaagccaatgga
gtactgctccagcccttccaactgcaaagtcctcttggcttctgactcta
ttcttgtcctgagctgagttcaccctgctctgtatatagtctctattttt
tgattgctttaaggagatgctccactgtccagtgaccccagcacagaaat
ctatgcttctattatttgggattggatgtctccccacactaacatttttc
tacatttaaatcccatcaaggtggtgattactgcatgaactttccaatac
aactgcatttgatctattcctgctcctcctgtctgactctgactgactct
ggtctctctctc

gaattcttctggtgatggacagaaatgtgaaggtgtaaggtgagtaagcc
ctttcctccccaacttgcttcttggtcatgatgttttttcaggaatagaa
accctgactaagacaacatgtgtgctatcatgtgtatgaataggggcatg
cctatgtcatagtatatgtgtggaagtcaagggatcagggaacagaggat
aaccttgcgtgttggttcttgccttcctccttgtttagggatgggtctct
tgttctggtttttctttttgtacaccaggctagagggcctgctaacttag
gagctttctcttgtctcttcctcccacctgctctggagatactcatgttc
gacattaggcttatgtgggagctggggatttaaactttggtattcatatt
tagtatggtgagtgcccactgagctatctaccaagtctgctaatttttgt
ttcctaaagtccttttattcatgttgtaaatgaatccaaaaatattgctc
tatttttaaaaatttttcaagaaggaattaaacattggtattcctatccc
atatcttcgattgaggaagagtggtccctgctgtgcatctggaatgaaaa
cattcttactggcagtttggtaaatgccctgacctcggtatttgcatttt
acagatgaagacaaggagtccttttatggacagtttgtgctgtgtctcca
acacatttattttcaactgattgcatagtagatattgggatattcaattt
atactcctctggtaaaatgtgtgatgtccaggcagacctcaaagaaatat
gtcacaattgcttgacttgtaccatgtgccctttcttcttgacaaatgtc
agaatgtaaatttgggaacgtttaaactaggtttttccaaggtaagggaa
ttctcctggtgcttagtattagttgggtttttagccatggtcagacatta
caaaatggtcttttctctagatgtcaactatggggaaagaagatctctaa
tgcttgtagtttccaactgggttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81635804_81636902
seq2: B6Ng01-201J11.b_45_1156

seq1  GAATTCTCATAAATTCCTTTTTCTGATGTTTTATTATGTTTTCTTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAATTCCTTTTTCTGATGTTTTATTATGTTTTCTTGAGAC  50

seq1  TAGGTCTTGATACACAGCCTTTGGTAGCCTTCAATTTGCAATCCCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTGATACACAGCCTTTGGTAGCCTTCAATTTGCAATCCCCTGCC  100

seq1  TCTGCTCCCTGAAGACAGTGATCAAGGACATGTGAATCCTTGTCTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCTGAAGACAGTGATCAAGGACATGTGAATCCTTGTCTTCTTA  150

seq1  CATTTAAACGCTTCATAAAATATGTACATTTCACTGTCTGTATTACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACGCTTCATAAAATATGTACATTTCACTGTCTGTATTACAAAG  200

seq1  CTATTCATGTGTCTGTTTTAAATATGACTGGAAAAATGATTTGTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATGTGTCTGTTTTAAATATGACTGGAAAAATGATTTGTTTTACT  250

seq1  AAAACTCTTTAGTAAATGTATAGAAAGAAGAGTAAAGAGACTTCCTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTTAGTAAATGTATAGAAAGAAGAGTAAAGAGACTTCCTGTAC  300

seq1  AAAGCTTAAACAAATGGGTTTCAGAGCCTGTGAGATAATGAGAAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAAACAAATGGGTTTCAGAGCCTGTGAGATAATGAGAAAGAGAT  350

seq1  AATTAGAATGATAAATGATCTCTGGTCATAACTTGTATTGACATCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATGATAAATGATCTCTGGTCATAACTTGTATTGACATCTCTAA  400

seq1  CTATACAAAACTATATATAGATATAGATAGATACTGATATCACCACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAACTATATATAGATATAGATAGATACTGATATCACCACATAA  450

seq1  CAACTAACAAAGTTACTTATTTCCATTCTCAGATAAACTAGATGCCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACAAAGTTACTTATTTCCATTCTCAGATAAACTAGATGCCCTGC  500

seq1  ACAATACTATAACACATAAGGGGACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTATAACACATAAGGGGACACACACACACACACACACACACACA  550

seq1  CACCAGCTGCTCCTCCCCACATGCATGAGCAATGTTCAAGAACAGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTGCTCCTCCCCACATGCATGAGCAATGTTCAAGAACAGTTTAC  600

seq1  CTTTCTGTTCCTGCCTTCTTATTTTCCCATCTACTTTTTGCCCACTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTCCTGCCTTCTTATTTTCCCATCTACTTTTTGCCCACTCTTC  650

seq1  AGTTTTCTCCCAATATCCTTTGTTTTGTCATTAAGTTATACATGGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCCCAATATCCTTTGTTTTGTCATTAAGTTATACATGGCTCTG  700

seq1  ATCTGAACACTTTCACTTTTTTTCTTATACTTTCCGTTGTTGGTCTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACACTTTCACTTTTTTTCTTATACTTTCCGTTGTTGGTCTTATC  750

seq1  TGACCTCATTTATAATGGGTGATTATTCTCACACCTATGAAGCCAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTTATAATGGGTGATTATTCTCACACCTATGAAGCCAATGGA  800

seq1  GTACTGCTCCAGCCCTTCCAACTGCAAAGTCCTCTTGGCTTCTGACTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTCCAGCCCTTCCAACTGCAAAGTCCTCTTGGCTTCTGACTCTA  850

seq1  TTCTTGTCCTGAGCTGAGTTCACCCTGCTCTGTATATAGTCTCTA-TTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  TTCTTGTCCTGAGCTGAGTTCACCCTGCTCTGTATATAGTCTCTATTTTT  900

seq1  TGA-TGC-TTAAGGAGATGCTCCACTGTCCAGTGA-CCCAGCACAGAAAT  946
      ||| ||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TGATTGCTTTAAGGAGATGCTCCACTGTCCAGTGACCCCAGCACAGAAAT  950

seq1  CTATGC-TCTA-TATTTGG--ATGGATG-CT-CCCACACTAACA-TTTTC  989
      |||||| |||| |||||||   |||||| || |||||||||||| |||||
seq2  CTATGCTTCTATTATTTGGGATTGGATGTCTCCCCACACTAACATTTTTC  1000

seq1  TACA-TTAAAT-CCATC-AGGTGGTGATAACTGCATG-ACTTTCCAAATA  1035
      |||| |||||| ||||| |||||||||| |||||||| ||||||| ||||
seq2  TACATTTAAATCCCATCAAGGTGGTGATTACTGCATGAACTTTCC-AATA  1049

seq1  CAACTGCATTTGATCTATTTCCTTGCTCTCCCTGTCTGTCTCTGTCTGTC  1085
      |||||||||||||||||||  | |||||  |||||||| ||||| ||| |
seq2  CAACTGCATTTGATCTATT--CCTGCTCCTCCTGTCTGACTCTGACTGAC  1097

seq1  TCT-GTCTCTCTCTC  1099
      ||| |||||||||||
seq2  TCTGGTCTCTCTCTC  1112


seq1: chr1_81788366_81789398
seq2: B6Ng01-201J11.g_67_1092 (reverse)

seq1  TGTAACACAGTTTGAAACTAACAAAGCATAAGAGAATCTTCTTTCCCCAT  50
      |||||| ||||| |||||||   |||||| |||| |||||||||||||||
seq2  TGTAACCCAGTTGGAAACTA--CAAGCATTAGAG-ATCTTCTTTCCCCAT  47

seq1  GTTTGTACATCTTAGAGAAAAGAACATTTTGCTAATGTCTGACATTGCTT  100
        ||| ||||| ||||||||||| ||||||| |||||||||||  ||  |
seq2  AGTTG-ACATC-TAGAGAAAAGACCATTTTG-TAATGTCTGACCATGGCT  94

seq1  AAAAACCCAAAACTAATACTAAGCACCAGGAGAAATACCTTACCTTTGGA  150
      ||||||||  |||||||||||||||||||||||| | ||||||| |||||
seq2  AAAAACCC--AACTAATACTAAGCACCAGGAGAATTCCCTTACC-TTGGA  141

seq1  AAAACCTAGTTTAAACGTTTCC-AATTTACATTCTGACATTTGTCAAGAA  199
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  AAAACCTAGTTTAAACGTTCCCAAATTTACATTCTGACATTTGTCAAGAA  191

seq1  GAAAGGGCACATGGTACAAGTCAAGCAATTGTGACATATTTCTTTGAGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCACATGGTACAAGTCAAGCAATTGTGACATATTTCTTTGAGGT  241

seq1  CTGCCTGGACATCACACATTTTACCAGAGGAGTATAAATTGAATAT-CCA  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCCTGGACATCACACATTTTACCAGAGGAGTATAAATTGAATATCCCA  291

seq1  ATATCTACTATGCAATCAGTTGAAAATAAATGTGTTGGAGACACAGCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACTATGCAATCAGTTGAAAATAAATGTGTTGGAGACACAGCACA  341

seq1  AACTGTCCATAAAAGGACTCCTTGTCTTCATCTGTAAAATGCAAATACCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCATAAAAGGACTCCTTGTCTTCATCTGTAAAATGCAAATACCG  391

seq1  AGGTCAGGGCATTTACCAAACTGCCAGTAAGAATGTTTTCATTCCAGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGCATTTACCAAACTGCCAGTAAGAATGTTTTCATTCCAGATG  441

seq1  CACAGCAGGGACCACTCTTCCTCAATCGAAGATATGGGATAGGAATACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGGACCACTCTTCCTCAATCGAAGATATGGGATAGGAATACCA  491

seq1  ATGTTTAATTCCTTCTTGAAAAATTTTTAAAAATAGAGCAATATTTTTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATTCCTTCTTGAAAAATTTTTAAAAATAGAGCAATATTTTTGG  541

seq1  ATTCATTTACAACATGAATAAAAGGACTTTAGGAAACAAAAATTAGCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTACAACATGAATAAAAGGACTTTAGGAAACAAAAATTAGCAGA  591

seq1  CTTGGTAGATAGCTCAGTGGGCACTCACCATACTAAATATGAATACCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGATAGCTCAGTGGGCACTCACCATACTAAATATGAATACCAAA  641

seq1  GTTTAAATCCCCAGCTCCCACATAAGCCTAATGTCGAACATGAGTATCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCCCCAGCTCCCACATAAGCCTAATGTCGAACATGAGTATCTC  691

seq1  CAGAGCAGGTGGGAGGAAGAGACAAGAGAAAGCTCCTAAGTTAGCAGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGTGGGAGGAAGAGACAAGAGAAAGCTCCTAAGTTAGCAGGCC  741

seq1  CTCTAGCCTGGTGTACAAAAAGAAAAACCAGAACAAGAGACCCATCCCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCTGGTGTACAAAAAGAAAAACCAGAACAAGAGACCCATCCCTA  791

seq1  AACAAGGAGGAAGGCAAGAACCAACACGCAAGGTTATCCTCTGTTCCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAGGAAGGCAAGAACCAACACGCAAGGTTATCCTCTGTTCCCTG  841

seq1  ATCCCTTGACTTCCACACATATACTATGACATAGGCATGCCCCTATTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGACTTCCACACATATACTATGACATAGGCATGCCCCTATTCAT  891

seq1  ACACATGATAGCACACATGTTGTCTTAGTCAGGGTTTCTATTCCTGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGATAGCACACATGTTGTCTTAGTCAGGGTTTCTATTCCTGAAAA  941

seq1  AACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGCTTACTCACCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGCTTACTCACCTTA  991

seq1  CACCTTCACATTTCTGTCCATCACCAGAAGAATTC  1033
      |||||||||||||||||||||||||||||||||||
seq2  CACCTTCACATTTCTGTCCATCACCAGAAGAATTC  1026


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