BAC Information

Click to search

BAC

Clone NameB6Ng01-201K09
Chromosome1 (Build37)
Map Location 182,629,673 - 182,774,259
singlet/doubletdoublet
Overlap geneLOC666431, Acbd3, H3f3a
Upstream geneGm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1
Downstream geneBC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K09.bB6Ng01-201K09.g
ACCGA022365GA022366
length3931,095
definitionB6Ng01-201K09.b B6Ng01-201K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(182,629,673 - 182,630,071)(182,773,184 - 182,774,259)
sequence
ttcaacctgctacgtggaaatcctcccgggtcctttgtccatcactgtcc
tctgccaccttctgtctgccccagaagaaccctacagggcagggaaacgg
actgagggaaataatggcaggctgtgtacacagctggggctgtgtgtggc
cagaaatcatagtgcaatttgtgatctgagaatcctctaatccaaccaac
aggcatcatttttaaaaaccatttccttcagatttgtcccatattgtaat
atgtattgaacaagagctcagaaactctcatcctctcttccttttgccct
aaatttagcttttcttattctaccccctctctgtctctatatctctgtct
gtttgtgggtctcttcctccaccccatctgtgtgtgtgtgtgt
gaattctctatgtagaccaggctggcctcaaactgggaataaagggtgtg
ctccaccacacctggcatccttagaggttctatgttttgtctttggtatc
tcacgtaaggacttaatagtccatttgcttctctagtttgaggtaaagat
tcaactttggagggataggagtgggtttgctgctgtctttttttttttgt
tttggtttttttttgttgttgtttttgtttttcgagacagggtttctctt
tatagccctggctgtcctggaactcactttgtagaccaggctggcctcaa
actcagaaatccgcctgcctctgtctctgcctcccgagtgctgggattaa
aggcgtgtgccaccacgcccggcttgctgttgtcttttgagacagggttt
ctgtgtagccccagtcattctggaacttgtgctgtagaccaggctgacct
cgaactcacagagatccacttgcctctgcatccgctctgcatcctgagtg
gtgggattaaaggcatgcaacaccatcacctggcttgatagtctactttt
ttccccctaagatttatttattgttatttgtaagtacactgtatctgtct
tcagatagactctatctgaagacacaccagaagagaacatcagatctcat
tatggatgtttgtgaaccaccatgtggttgctggggatttgaactcagga
cctttggaagagcagtcagtgctcttaaaccgctgagccatgtctccagc
cctgacatttctagtcttgtactttttcacatagacattgatgttctctt
acagtactctctttttcttcactggctctgatgctaccactgatgtaaat
gccagcaaggtccttctatggcactctgccccccaccccccaccccatca
gcttgcagctcagagaacaactttcagtgttttatcctccctctttttta
gtagattcagctagcaatgtcctttccttgggtctttacaagccgttctt
ctctcccttgaatctagcaataaacaaggtcatatactatcaatgaggtt
gaaagtgtgtgtggcttcgtggcagagtgaacccttactcccgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182629673_182630071
seq2: B6Ng01-201K09.b_43_441

seq1  GAATTCTTCAACCTGCTACGTGGAAATCCTCCCGGGTCCTTTGTCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACCTGCTACGTGGAAATCCTCCCGGGTCCTTTGTCCATCA  50

seq1  CTGTCCTCTGCCACCTTCTGTCTGCCCCAGAAGAACCCTACAGGGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTGCCACCTTCTGTCTGCCCCAGAAGAACCCTACAGGGCAGGG  100

seq1  AAACGGACTGAGGGAAATAATGGCAGGCTGTGTACACAGCTGGGGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGACTGAGGGAAATAATGGCAGGCTGTGTACACAGCTGGGGCTGTG  150

seq1  TGTGGCCAGAAATCATAGTGCAATTTGTGATCTGAGAATCCTCTAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAAATCATAGTGCAATTTGTGATCTGAGAATCCTCTAATCCA  200

seq1  ACCAACAGGCATCATTTTTAAAAACCATTTCCTTCAGATTTGTCCCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGGCATCATTTTTAAAAACCATTTCCTTCAGATTTGTCCCATAT  250

seq1  TGTAATATGTATTGAACAAGAGCTCAGAAACTCTCATCCTCTCTTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGTATTGAACAAGAGCTCAGAAACTCTCATCCTCTCTTCCTTT  300

seq1  TGCCCTAAATTTAGCTTTTCTTATTCTACCCCCTCTCTGTCTCTATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAAATTTAGCTTTTCTTATTCTACCCCCTCTCTGTCTCTATATCT  350

seq1  CTGTCTGTTTGTGGGTCTCTTCCTCCACCCCATCTGTGTGTGTGTGTGT  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTTTGTGGGTCTCTTCCTCCACCCCATCTGTGTGTGTGTGTGT  399

seq1: chr1_182773184_182774259
seq2: B6Ng01-201K09.g_64_1158 (reverse)

seq1  CACGGGGGTA--GGGTCACTCTGCCACGGAGCCACACAC---TTCAGCCT  45
      |||||| |||  || ||||||||||||| ||||||||||   |||| |||
seq2  CACGGGAGTAAGGGTTCACTCTGCCACGAAGCCACACACACTTTCAACCT  50

seq1  CA-TGATAGT-TTTGACC-TGTTTATTGCTAAGATCAAGG--GAGGAGAA  90
      || ||||||| | ||||| ||||||||||||   ||||||  ||| ||||
seq2  CATTGATAGTATATGACCTTGTTTATTGCTAGATTCAAGGGAGAGAAGAA  100

seq1  C-GCTTGTAAAAGACCAAGG-AAGGACATTGCTAGCTGAATCTACTAAAA  138
      | |||||||||   |||||| |||||||||||||||||||||||||||||
seq2  CGGCTTGTAAAGACCCAAGGAAAGGACATTGCTAGCTGAATCTACTAAAA  150

seq1  AAGAGGGAGATTAAAACACTGAA--GTGTTCTCTGAGCTGCAAGCTGATG  186
      |||||||||  ||||||||||||   ||||||||||||||||||||||||
seq2  AAGAGGGAGGATAAAACACTGAAAGTTGTTCTCTGAGCTGCAAGCTGATG  200

seq1  GGGTGGGGGGTGGGGGGCAGAGTGCCATAGAAGGACCTTGCTGGCATTTA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGGTGGGGGGCAGAGTGCCATAGAAGGACCTTGCTGGCATTTA  250

seq1  CATCAGTGGTAGCATCAGAGCCAGTGAAGAAAAAGAGAGTACTGT-AGAG  285
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATCAGTGGTAGCATCAGAGCCAGTGAAGAAAAAGAGAGTACTGTAAGAG  300

seq1  AACATCATTGTCTATGTG-AAAAGTACAAGACTAG-AATGTCAGGGCTGG  333
      ||||||| |||||||||| |||||||||||||||| ||||||||||||||
seq2  AACATCAATGTCTATGTGAAAAAGTACAAGACTAGAAATGTCAGGGCTGG  350

seq1  AGACATGGCTCAGCGG-TTAAGAGCACTGACTGCTCTTCCAAAGGTCCTG  382
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGACATGGCTCAGCGGTTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTG  400

seq1  AGTTCAAAT-CCCAGCAACCACATGGTGGTTCACAAACATCCATAATGAG  431
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCCCAGCAACCACATGGTGGTTCACAAACATCCATAATGAG  450

seq1  ATCTGATGTTCTCTTCTGGTGTGTCTTCAGATAGAGTCTATCTGAAGACA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGTTCTCTTCTGGTGTGTCTTCAGATAGAGTCTATCTGAAGACA  500

seq1  GATACAGTGTACTTACAAATAACAATAAATAAATCTTAGGGGGAAAAAAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTGTACTTACAAATAACAATAAATAAATCTTAGGGGGAAAAAAG  550

seq1  TAGACTATCAAGCCAGGTGATGGTGTTGCATGCCTTTAATCCCACCACTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTATCAAGCCAGGTGATGGTGTTGCATGCCTTTAATCCCACCACTC  600

seq1  AGGATGCAGAGCGGATGCAGAGGCAAGTGGATCTCTGTGAGTTCGAGGTC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGAGCGGATGCAGAGGCAAGTGGATCTCTGTGAGTTCGAGGTC  650

seq1  AGCCTGGTCTACAGCACAAGTTCCAGAATGACTGGGGCTACACAGAAACC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGCACAAGTTCCAGAATGACTGGGGCTACACAGAAACC  700

seq1  CTGTCTCAAAAGACAACAGCAAGCCGGGCGTGGTGGCACACGCCTTTAAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAAGACAACAGCAAGCCGGGCGTGGTGGCACACGCCTTTAAT  750

seq1  CCCAGCACTCGGGAGGCAGAGACAGAGGCAGGCGGATTTCTGAGTTTGAG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCGGGAGGCAGAGACAGAGGCAGGCGGATTTCTGAGTTTGAG  800

seq1  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAAAGAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAAAGAG  850

seq1  AAACCCTGTCTCGAAAAACAAAAACAACAACAAAAAAAAACCAAAACAAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAACAAAAACAACAACAAAAAAAAACCAAAACAAA  900

seq1  AAAAAAAAGACAGCAGCAAACCCACTCCTATCCCTCCAAAGTTGAATCTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACAGCAGCAAACCCACTCCTATCCCTCCAAAGTTGAATCTT  950

seq1  TACCTCAAACTAGAGAAGCAAATGGACTATTAAGTCCTTACGTGAGATAC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAACTAGAGAAGCAAATGGACTATTAAGTCCTTACGTGAGATAC  1000

seq1  CAAAGACAAAACATAGAACCTCTAAGGATGCCAGGTGTGGTGGAGCACAC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAAACATAGAACCTCTAAGGATGCCAGGTGTGGTGGAGCACAC  1050

seq1  CCTTTATTCCCAGTTTGAGGCCAGCCTGGTCTACATAGAGAATTC  1076
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTCCCAGTTTGAGGCCAGCCTGGTCTACATAGAGAATTC  1095