BAC Information

Click to search

BAC

Clone NameB6Ng01-202D11
Chromosome1 (Build37)
Map Location 150,046,188 - 150,047,370
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202D11.bB6Ng01-202D11.g
ACCGA022774GA022775
length1,1481,200
definitionB6Ng01-202D11.b B6Ng01-202D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatattg
tcaaatgatttctccacatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttgtatactggattacgttgatggatttccatatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatgtatgaatgtt
ttgatgtgttctttgatttggctagcgagaactttattgaggatttttgc
atcgatattaataagggagattggtctgaagttctctatctttgttgggt
ctttttgtagtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctgtttctattttgtggaatagtttgtgaagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacacgtttg
atcctggacttttttggttgggagactattaatgactgcttctatttctt
taggggacataggacagtttagatcattaacctgatcttgatttaacttt
ggtacctggtatctttctagaaacttgtccatttcatccaggttctgcag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttggtatgtctctttttctttctgattttgtttattag
gatgcttcccctgtgccctctaatgagtctggctaagggtttatctatct
tgttgattttctcaaagaaccagctcctcgtttggatgattctttgaata
tttcttcttgtttccacttggttgacttcacctctgagtttgattatttc
ctgctgtctactcctcttgggtgaatttgcttccttttgttctagaggtt
ttaaggtgtgttgtcaagctgctagtgtgtgctctctttagtttcttttt
ggaggcactcagagatatgagttttccttttagaaatgctttcattgttt
cccataagttttggtatgttgtggcttcatttcattaaacttataaaaag
tcttaatttcttctttatccttttgaccaggtattcattgagtaggtgtt
ggtcagtttcacacattatgttggcctttccacttaactcttaggtta

gaattccttaagtacaaacagagaataattggttactcctatgacattta
tactactattataatattagatgtatctttcacagaatgttattattatt
gttggtgcagattttttggattatttcatctcttgtaagtagacacaatg
aatctctttgataacagtttgttctggcctcgattctctattttgagaga
gtagatattttctgcatatctccccaggaataattccttataataaactg
tattttttttaactagagctcagaattgttagactagaggtatattactt
tggtacttcccagtccatcttttattcatttttccttacctcaccctcct
tagttcctttaaatgttgaagatgcagttcacataatttatttatgagtt
atttgccaaatataatttttgaacttatctgctcatagtctgtttattgt
ctttccttgctattcatagttataaattcatggtctgtaaaagttgacac
cattttaataattactttcaggaaaaaggtagaaaattcacaataacact
tttttgtattgaagagattttcagtgaagttaaagtacttcttaaatatt
attgaaataatgatgactgaatatttccctaattattttatccccttatc
ttttgctcagatttcattttcctttgagattttgtaatctttatacatct
ttataccttcttaagcaatattctctggattagagaaatggtagttctta
attcttacacatgttcccatgggtgctattttatagtaagcataataaga
ttcattagatatattaagaagtccaattttatgatacacatgagaaaaga
aaaaaagtctcttgatattagcaaagtattatgacttaagttctccaacc
ctgggaagaaccgttaaatgcagcaaaatttatgggttactattgtattt
ttctttttgtttagtaattctactacattgagtaattcatataaatagaa
aatatttcagcactgaatctgatttattccattttgtatcagatcactgt
taggatgtcttataataataagtaatatatcatactttggcaggcattat
ggtattatggaaacctctgaacaagagggcactagagttggttaagccat
atccacctcaaacaggtctcttcctctcaattaatcctataaaatttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150046188_150047370
seq2: B6Ng01-202D11.g_69_1268 (reverse)

seq1  CAGAA---TTATA-GAT--ATTGAGA-----AGAACTGTTTTAAGGTGAT  39
      |||||   ||||| |||  |||||||     ||| |||||| | |  |||
seq2  CAGAAATTTTATAGGATTAATTGAGAGGAAGAGACCTGTTTGAGGTGGAT  50

seq1  ATG--CTAACAAACTCTAGTGCCCTCTTGTTCAGGAGGTTT-CATAATA-  85
      |||   |||| |||||||||||||||||||||| ||||||| ||||||| 
seq2  ATGGCTTAACCAACTCTAGTGCCCTCTTGTTCA-GAGGTTTCCATAATAC  99

seq1  CAT-ATG-CTTCCAAAGTATGATATATTAAT--TTATTATATAGACATTC  131
      ||| ||| || |||||||||||||||||| |  |||||||| |||||| |
seq2  CATAATGCCTGCCAAAGTATGATATATTACTTATTATTATA-AGACATCC  148

seq1  CTACAGTGATCCTGATAC-ATATGGATAAAATCAGATTCAGTGCTGAAAT  180
        |||||||| ||||||| | |||||  ||||||||||||||||||||||
seq2  TAACAGTGAT-CTGATACAAAATGGAATAAATCAGATTCAGTGCTGAAAT  197

seq1  ATTTTTTCTATTTTATATGAATTACTCAATGTAGTAGAATTACTAAAC-A  229
      |  ||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  A--TTTTCTA-TTTATATGAATTACTCAATGTAGTAGAATTACTAAACAA  244

seq1  AAAGAAAAATACAATAGTAA-CCATAAATTTTGCTGCATTTAACGGTTCT  278
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGAAAAATACAATAGTAACCCATAAATTTTGCTGCATTTAACGGTTCT  294

seq1  T-CCAGGGTTGGAGAACTTAAGTCATAATACTTTGCTAATATCAAGAGAC  327
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTTGGAGAACTTAAGTCATAATACTTTGCTAATATCAAGAGAC  344

seq1  TTTTTTTCTTTTCTCATGTGTATCATAAAATTGGACTTCTTAATATATCT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTCTCATGTGTATCATAAAATTGGACTTCTTAATATATCT  394

seq1  AATGAATCTTATTATGCTTACTATAAAATAGCACCCATGGGAACATGTGT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCTTATTATGCTTACTATAAAATAGCACCCATGGGAACATGTGT  444

seq1  AAGAATTAAGAACTACCATTTCTCTAATCCAGAGAATATTGCTTAAGAAG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAGAACTACCATTTCTCTAATCCAGAGAATATTGCTTAAGAAG  494

seq1  GTATAAAGATGTATAAAGATTACAAAATCTCAAAGGAAAATGAAATCTGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAGATGTATAAAGATTACAAAATCTCAAAGGAAAATGAAATCTGA  544

seq1  GCAAAAGATAAGGGGATAAAATAATTAGGGAAATATTCAGTCATCATTAT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGATAAGGGGATAAAATAATTAGGGAAATATTCAGTCATCATTAT  594

seq1  TTCAATAATATTTAAGAAGTACTTTAACTTCACTGAAAATCTCTTCAATA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATATTTAAGAAGTACTTTAACTTCACTGAAAATCTCTTCAATA  644

seq1  CAAAAAAGTGTTATTGTGAATTTTCTACCTTTTTCCTGAAAGTAATTATT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTGTTATTGTGAATTTTCTACCTTTTTCCTGAAAGTAATTATT  694

seq1  AAAATGGTGTCAACTTTTACAGACCATGAATTTATAACTATGAATAGCAA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTGTCAACTTTTACAGACCATGAATTTATAACTATGAATAGCAA  744

seq1  GGAAAGACAATAAACAGACTATGAGCAGATAAGTTCAAAAATTATATTTG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACAATAAACAGACTATGAGCAGATAAGTTCAAAAATTATATTTG  794

seq1  GCAAATAACTCATAAATAAATTATGTGAACTGCATCTTCAACATTTAAAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAACTCATAAATAAATTATGTGAACTGCATCTTCAACATTTAAAG  844

seq1  GAACTAAGGAGGGTGAGGTAAGGAAAAATGAATAAAAGATGGACTGGGAA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGGAGGGTGAGGTAAGGAAAAATGAATAAAAGATGGACTGGGAA  894

seq1  GTACCAAAGTAATATACCTCTAGTCTAACAATTCTGAGCTCTAGTTAAAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAGTAATATACCTCTAGTCTAACAATTCTGAGCTCTAGTTAAAA  944

seq1  AAAATACAGTTTATTATAAGGAATTATTCCTGGGGAGATATGCAGAAAAT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGTTTATTATAAGGAATTATTCCTGGGGAGATATGCAGAAAAT  994

seq1  ATCTACTCTCTCAAAATAGAGAATCGAGGCCAGAACAAACTGTTATCAAA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCTCTCAAAATAGAGAATCGAGGCCAGAACAAACTGTTATCAAA  1044

seq1  GAGATTCATTGTGTCTACTTACAAGAGATGAAATAATCCAAAAAATCTGC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATTGTGTCTACTTACAAGAGATGAAATAATCCAAAAAATCTGC  1094

seq1  ACCAACAATAATAATAACATTCTGTGAAAGATACATCTAATATTATAATA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAATAATAATAACATTCTGTGAAAGATACATCTAATATTATAATA  1144

seq1  GTAGTATAAATGTCATAGGAGTAACCAATTATTCTCTGTTTGTACTTAAG  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATAAATGTCATAGGAGTAACCAATTATTCTCTGTTTGTACTTAAG  1194

seq1  GAATTC  1183
      ||||||
seq2  GAATTC  1200


| Home | SequenceCutter | Blast | Download |