BAC Information

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BAC

Clone NameB6Ng01-202F05
Chromosome1 (Build37)
Map Location 90,123,972 - 90,178,260
singlet/doubletdoublet
Overlap geneLOC100040766, 6430706D22Rik, LOC100038822
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202F05.bB6Ng01-202F05.g
ACCGA022847GA022848
length1,1871,117
definitionB6Ng01-202F05.b B6Ng01-202F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,123,972 - 90,125,161)(90,177,260 - 90,178,260)
sequence
gaattccatagtcccaaatttgtaatacctagagaagagggagggcattg
tctttactaagcatattggtttattactgtgtgacaaagtataactactt
tagtagattaaaaaagttcccactatctcagtttctacatgggcaggagt
ctgggtgtggcttgcctgggcccactgctcatggttttagaggatgcagc
caagttgtgggcaatgttacttttctcttttgcactcaataacctttcct
ctgcatgtgatggttggcacaactcagttcccgtagttacaggactggga
acccaagtttcaaaccacatggtccctccataggcagcacacatcaccaa
tctttcctctccgtgatggcagagtgtctttttctagtctgtgaagagcc
ccatgtgaacaatgtgatcctggaagtcaattcccatcacctttgccaac
aacacaagcaactcaagagagggaattcctataagcattgcatctaaggg
gacatcctgctccttttaccttatttaatggttcaaatggagtcacagat
tctacccacactgaaggaagagttttaaaaagtttgtgagctcctgggag
gtcatcttagggagtgttgtcacatggagtatttattaatctcatccatc
ttgaaggcacttgaggagacatgaaagaagccactgagttgaatgaagac
atgttggaggaagcagagcatctggcacttctagagccagaggatgatgg
taaggaagtcaaccacatcaccacaccactggtccctcttgggccactca
acaccacacctacaccatctttgtgtcagtacattcttccaagtcaccaa
cctcctgaacatcatggacagtgaatcagcaaagacagacaccacagggc
caggcctggacatgcggaagaccttggcttcagtgataatcacagagaag
ctaccacggatccctgtgtagtgatgaacgcgctcatccgctgcctgcag
atgccagaggtagggacaccctaagccacagactctctttgaccagaata
acattagatgcctggggagtcatctaccattcagcacaccttttcatcac
catgaaccacactggtaagggccaagaatgcaagagatgggctgactcag
agcacctcatattcctcaggctagttgggggttagag
gaattcctgagttcgagccagcctggtctacagagtgagttccaggacag
ccaggggctacacagagaaatcctgtctcgaaaaacaaaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaaaacaaaaaggatgagaatggccatc
ataggctcatatgtttgaatacttggttcccagctgatgaaactgggaag
gattaggaggtgtgtcactaggggtgggctttgaggtttgaaaaggctcc
aatattccatttctttccccttctttttctctttctagctcttgctctca
ctctctcaaccttcatgcccaaaaatcaacatctgaaatgtcttgtgata
aacacaggatgcaacagtggtttcagctccagcatctgccttgagatcct
ggctttcctcagtgatacactgctaccagaagttgtaggcacaaacgaac
cctctccttcctgacttgctatgccttttatcaacaggagtgaaactaga
acaccccagtaaagtgtgggatgaagaaagaactgcactggggtgctaga
ccaagaaaagaggctcgagggcgaacccagaactttcctacagtagacag
ttttttgagtggcttgaaaatatgtataaactggagagctggctcagcgg
ttaagagcactgactgctcttccataggtcctgagttcaaatcccagcaa
ccacatggtggctcacaaccatctgtaatgggatccaataccctcttctg
gtgtgtctgaagacagcaacagtgtactcataaataaaaataaataaatc
ttttatttttaaaaaaaatatgtataaactacatgatctcggaaaataaa
aaagaaagggggtgtttgggaagttatccattaatctcatgcctccagtt
agaaaactattcacatataatgcaggaagggctggcctttgcgtgcttca
gagaaagatgtcatgagagtagtcagacccataataatggggttgattaa
aaaataggtcacccaatcgatctaattgtgttctattttttaatgtaaat
ctcatgttttaaatgtgtagccattagccacattatcgtgaccctagaaa
tgtgtttggttctgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90123972_90125161
seq2: B6Ng01-202F05.b_44_1230

seq1  GAATTCCATAGTCCCAAATTTGTAATATCTAGAGAAGAGGGAGGGCATTG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCATAGTCCCAAATTTGTAATACCTAGAGAAGAGGGAGGGCATTG  50

seq1  TCTTTACTAAGCATATTGGTTTATTACTGTGTGACAAAGTATAACTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTAAGCATATTGGTTTATTACTGTGTGACAAAGTATAACTACTT  100

seq1  TAGTAGATTAAAAAAGTTCCCACTATCTCAGTTTCTACATGGGCAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATTAAAAAAGTTCCCACTATCTCAGTTTCTACATGGGCAGGAGT  150

seq1  CTGGGTGTGGCTTGCCTGGGCCCACTGCTCATGGTCTTAGAGGATGCAGC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGGGTGTGGCTTGCCTGGGCCCACTGCTCATGGTTTTAGAGGATGCAGC  200

seq1  CAAGTTGTGGGCAATGTTACTTTTCTCTTTTGCACTCAATAACCTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTGGGCAATGTTACTTTTCTCTTTTGCACTCAATAACCTTTCCT  250

seq1  CTGCATGTGATGGTTGGCACAACTCAGTTCCCGTAGTTACAGGACTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGATGGTTGGCACAACTCAGTTCCCGTAGTTACAGGACTGGGA  300

seq1  ACCCCAGTTTCAAACCACATGGTCCCTCCATAGGCAGCACACATCACCAA  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTTTCAAACCACATGGTCCCTCCATAGGCAGCACACATCACCAA  350

seq1  TCTTTCCTCTCCGTGATGGCAGAGTGTCTTTTTCTAGTCTGTGAAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCTCCGTGATGGCAGAGTGTCTTTTTCTAGTCTGTGAAGAGCC  400

seq1  CCATGTGAACAATGTGATCCTGGAAGTCAATTCCCATCACCTTTGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAACAATGTGATCCTGGAAGTCAATTCCCATCACCTTTGCCAAC  450

seq1  AACACAAGCAACTCAAGAGAGGGAATTCCTATAAGCATTGCATCTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGCAACTCAAGAGAGGGAATTCCTATAAGCATTGCATCTAAGGG  500

seq1  GAACATCCTGCTCCTTTTACGTTATTTAATGGTTCAAACGGAGTCACAGA  550
      | |||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  G-ACATCCTGCTCCTTTTACCTTATTTAATGGTTCAAATGGAGTCACAGA  549

seq1  TTCTACCCACACTGAAGGAAGAGTTTTAAAAAGTTTGTGAGCTCCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCACACTGAAGGAAGAGTTTTAAAAAGTTTGTGAGCTCCTGGGA  599

seq1  GGTCTTCTTAGGGAGTGTTGTCACATGGAGTATTTATTAATCTCATCCAT  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTTAGGGAGTGTTGTCACATGGAGTATTTATTAATCTCATCCAT  649

seq1  CTTGAAGGCACTTGAGGAGACATGAAAGAAGCCACTGAGTTGAATGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGCACTTGAGGAGACATGAAAGAAGCCACTGAGTTGAATGAAGA  699

seq1  CATGTTGGAGGAAGCAGAGCATCTGGCACTTCTAGAGCCAGAGGATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGAGGAAGCAGAGCATCTGGCACTTCTAGAGCCAGAGGATGATG  749

seq1  GTAAGGAAGTCAACCACATCACCACACCACTGGTCCCTCTTGGGCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAGTCAACCACATCACCACACCACTGGTCCCTCTTGGGCCACTC  799

seq1  AACACCACACCTACACCATCTTTGTGTCAGGTACATTCTTCCAAGTCACC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACACCACACCTACACCATCTTTGTGTCA-GTACATTCTTCCAAGTCACC  848

seq1  AACCTCCTGAACATCATGGACAGTGAATCAGCAAAGACAGACACCACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTGAACATCATGGACAGTGAATCAGCAAAGACAGACACCACAGG  898

seq1  GCCAGGCCTGGACATGCGGAAGACCTTGGCTTCAGTGATAATCACAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCTGGACATGCGGAAGACCTTGGCTTCAGTGATAATCACAGAGA  948

seq1  AGGCTACCACGGATCCCTGTGTAGTGATGAACGCGCTCATCCGCTGCCTG  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCTACCACGGATCCCTGTGTAGTGATGAACGCGCTCATCCGCTGCCTG  997

seq1  CAGATGCCAGAGGTAGGGACACCCTAAGCCGCCAGACCTCCTCTTTGACC  1050
      ||||||||||||||||||||||||||||||  |||||   ||||||||||
seq2  CAGATGCCAGAGGTAGGGACACCCTAAGCC-ACAGAC--TCTCTTTGACC  1044

seq1  AG-ATACATTTAGATGCCT-GGGAGTCCACCTACCATTCAGCACACCTTT  1098
      || |||   |||||||||| |||||| || ||||||||||||||||||||
seq2  AGAATAACATTAGATGCCTGGGGAGT-CATCTACCATTCAGCACACCTTT  1093

seq1  TCAGTCACCATGAA-CACAGCGTTAAGGGCCAAG-ATGC-AGAGAT-GGC  1144
      ||| |||||||||| ||||  | ||||||||||| |||| |||||| |||
seq2  TCA-TCACCATGAACCACACTGGTAAGGGCCAAGAATGCAAGAGATGGGC  1142

seq1  TGACACCAGAGGCACTCATATTCCTCAGGGCTAGTT-GGGGTTAGAG  1190
      ||||  |||||   ||||||||||||| |||||||| ||||||||||
seq2  TGAC-TCAGAGCACCTCATATTCCTCA-GGCTAGTTGGGGGTTAGAG  1187

seq1: chr1_90177260_90178260
seq2: B6Ng01-202F05.g_202_1185 (reverse)

seq1  TTGCAGAA-CAAACACATTCTTAGGGTCATAATTAATGTGGCTTAATGGG  49
      |||||||| ||||||||||  ||||||||  | ||||||||| |||| ||
seq2  TTGCAGAACCAAACACATTTCTAGGGTCACGA-TAATGTGGC-TAAT-GG  47

seq1  CTACACATTTTAAAAACCAATGGAAGAATTTACATT-AAAAATAGAACAC  98
      ||||||||||  |||||  |||  || ||||||||| |||||||||||||
seq2  CTACACATTT--AAAAC--ATG--AG-ATTTACATTAAAAAATAGAACAC  90

seq1  AATTAGATCGATTTGGGTGACCTA-TTTTTAATCAACCCCATTATTTATG  147
      ||||||||||| |||||||||||| ||||||||||||||||||| |||||
seq2  AATTAGATCGA-TTGGGTGACCTATTTTTTAATCAACCCCATTA-TTATG  138

seq1  GGTCTGAGAACTCTCATGACATCTTTCTCTGAAGCATGCAAAGGCCAGCC  197
      |||||||  ||||||||||||||||||||||||||| |||||||||||||
seq2  GGTCTGACTACTCTCATGACATCTTTCTCTGAAGCACGCAAAGGCCAGCC  188

seq1  CTTCCTGCATTATATGTGAATAGTTTTCTAACTGGAGGCATGAGATTAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCATTATATGTGAATAGTTTTCTAACTGGAGGCATGAGATTAAT  238

seq1  GGATAACTTCCCAAACACCCCTTTTCTTTTTTATTTTCTGAGATCACGTA  297
      ||||||||||||||||||||| |||||||||||||||| ||||||| |||
seq2  GGATAACTTCCCAAACACCCCCTTTCTTTTTTATTTTCCGAGATCATGTA  288

seq1  GTTTATACATA--TTTTTTAAAAATAAAAGATTTATTTATTTTTATTTAT  345
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GTTTATACATATTTTTTTTAAAAATAAAAGATTTATTTATTTTTATTTAT  338

seq1  GAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATTGGGTCCC  395
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  GAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGTATTGGATCCC  388

seq1  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG  438

seq1  ACCTATGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCAGCTCTCCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCAGCTCTCCAGT  488

seq1  TTATACATATTTTCAAGCCCCTCAAAAAAACTATCTACTGTAGGAAAGTT  545
      ||||||||||||||||||| ||| |||||||| |||||||||||||||||
seq2  TTATACATATTTTCAAGCCACTC-AAAAAACTGTCTACTGTAGGAAAGTT  537

seq1  CTGGGTTTACCCTCGAGCCTCTTTTCTTGGTCTAGCACCCCAGTGCAGTT  595
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCGCCCTCGAGCCTCTTTTCTTGGTCTAGCACCCCAGTGCAGTT  587

seq1  CTTTCTTCATCCCACACTTTACTGGGGTGTTCTAGTTTCACTCCTGTTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCATCCCACACTTTACTGGGGTGTTCTAGTTTCACTCCTGTTGA  637

seq1  TAAAAGGCATAGCAACTCAGGAAGGAGAGGGTTCGTTTGTGCCTACAACT  695
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCATAGCAAGTCAGGAAGGAGAGGGTTCGTTTGTGCCTACAACT  687

seq1  TCTGGTAGCAGTGTATCACCGAGGGAAGCCAGGACAGGATCTCAAGGCAG  745
      ||||||||||||||||||| |||| ||||     ||||||||||||||||
seq2  TCTGGTAGCAGTGTATCACTGAGGAAAGC-----CAGGATCTCAAGGCAG  732

seq1  ATGCTGGAGCTGAAACCACTGTTGCATCCTGTGTTTATCACAAGACATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGCTGAAACCACTGTTGCATCCTGTGTTTATCACAAGACATTT  782

seq1  CAGATGTTGATTTTTGGGCATGAAGGTTGAGAGAGTGAGAGCAAGAGCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTGATTTTTGGGCATGAAGGTTGAGAGAGTGAGAGCAAGAGCTA  832

seq1  GAAAGAGAAAAAGAGGGGGAGAGAAATGAAATATTGGAGCCTTTTCAAAC  895
      |||||||||||||| ||||| ||||||| |||||||||||||||||||||
seq2  GAAAGAGAAAAAGAAGGGGAAAGAAATGGAATATTGGAGCCTTTTCAAAC  882

seq1  CTCAAAGCCCACCCCTAGTGACACACCTCCTAATCCTTCCCAAACAGTTT  945
      ||||||||||||||||||||||||||||||||||||||||    ||||||
seq2  CTCAAAGCCCACCCCTAGTGACACACCTCCTAATCCTTCC----CAGTTT  928

seq1  TATCAGCTGGGAACCAAGTATTCAAACATATGAGCCTATGATGGCCATTC  995
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTGGGAACCAAGTATTCAAACATATGAGCCTATGATGGCCATTC  978

seq1  TCATCC  1001
      ||||||
seq2  TCATCC  984