BAC Information

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BAC

Clone NameB6Ng01-206M09
Chromosome1 (Build37)
Map Location 7,373,858 - 7,504,640
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620393, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206M09.bB6Ng01-206M09.g
ACCGA026104GA026105
length1,1141,172
definitionB6Ng01-206M09.b B6Ng01-206M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,503,516 - 7,504,640)(7,373,858 - 7,375,019)
sequence
gaattcaggaaatccgggaactaattagaacagaactgcagatctaagtg
tcaagtaatttcttctttaaacattagtccaacctactgcaaccatgcaa
agaattgccacagtttttctgcatgaataattttacaaatgcattcagtt
attactgtctataagtaataagatcattaccactggaatgccaaggtttt
ttttgaatacataaatatcattgggaatttagcattagttcagctcagct
agttaaaaataacaagaatattgttcttactaatagctactttgccaaaa
caaaagaatagaacatttttctctctattcttcaatgtatcttagctttg
aaattcaactgaccttgtatgaaccacagttcttaaggatattcacaagt
aattgcactgtttcttgtgagtctgaaaacatttgtcccaagatacttct
atttgttttcgcccaaggaaattggtgctacattttgaactcagaatgat
tagaatttcacatgattttagaaatgattttgtctgaaaaaggatacact
aactttgtgtttggtaaagcaaaccaaaaattccatgttatgtttagtct
gctggaaattgatttctaaatactaaaagactaaaaccactttataaaac
atatactaggcaacatatgaaaaggcacactataaataattgattaatac
atgatttttataaaatattataggtatgtatattatgagagagggttatt
ttctttcaataattgccacaggatcattgagagtgctaatcaatcaaatg
ataaatactgagaattctgttctggttttaactaacaagttttaggggaa
gctactcttttccaaattctggttttaggtaaggggtattgagaatgagt
aaggcctcgcttctgggccattcatactcacatgctcaaacaaaaattaa
caaaaaagaaatatagtaataaatagatgacagagagaggatacttgtgg
acttgtggagttctgacaggtctctcatcaaatctgagattaaagtcaaa
agaaaaagtcattagtaccgtgtgttgagactgaagccaggtttattcta
ttaaattaatgaac

gaattcttctgagtggaaaacaaaactcttcacattcaagccagcagagg
ctctggatccgattctgcagaacacaaggacacacagcactatgaagtgt
tgtcaacagaagagtgcataagacgggagtcggtgagggaagagtgcaac
agacagcaagggcttctagggttgtgtaaggacaaactccattcttttcc
cgaaagtgagcatggtaagagaaagcagcaataagtggtgttgtacagta
aagcggagatacagagatgcagtctcagagaaagaaattggtatttttct
aaccccacaaaccagccgctgataggttagactctgtgcatctctgttgt
tcatttcttccagtcattttcaggagccatcacacacacacacacacaca
cacacacacacacacacacacaaccacttctgtacaaacagaatctgggg
gctgcccatttcatcctcacctctgtgtctttattcagaccattgtcttc
ccttagagaacctctcctgcacccacccaggtgtacagtctgtgactgct
ttgaggcagaccctgaattgatatacttagtgcttcattataaaagagct
attatgattctcttcagtagccctcagatcattaacccacacaacaaaat
acaaagtaaacctctgcagacagttgttcgttttgtgttttcttgccaac
tacttcttgatataaagagaatttcctgttaaacttggacggcattaagt
gtacccaggccctccatgaaatcttgattaccgacaagataccaaagaac
cagaatatgaagtacaaaatgtgaagactaggaggttaagttaaaattag
tagtcaaattaaaagtctatccgacgtgacagaaattaagcagcaagctg
ccaggcaaactgggagtgaaaggcagaaacagaccagaagcagattaacc
ccccaacttgggagtgcacttcctttctaccaaggctctggctctctaca
aaattgggagaaaattacttcttacacttctaacacaggctccttaagaa
aatgcttgggtagtgtccttgcgaatagaacctttatactggagtttttt
gtggaagccatgtggttcagaattctgttcatattcagttgtcctagact
taattgaccatctcgtcgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7503516_7504640
seq2: B6Ng01-206M09.b_42_1155 (reverse)

seq1  GTTCATTTATTTAAATAGAATAAACCCTGGCTCTCAGTCTCAACACACGG  50
      ||||||| |||| ||||||||||| ||||||| |||||||||||||||||
seq2  GTTCATTAATTT-AATAGAATAAA-CCTGGCT-TCAGTCTCAACACACGG  47

seq1  TACTAATGACTTTTTTCTTTTTGACTTTAATCTCAGATTTGATGAGAGGC  100
      |||||||||||||||   ||||||||||||||||||||||||||||| | 
seq2  TACTAATGACTTTTT--CTTTTGACTTTAATCTCAGATTTGATGAGA-GA  94

seq1  CCTGTCAGAACCTCCACAAGTCCACAAGTATCCCTTCTCTCTGTCATCTA  150
      |||||||||| ||||||||||||||||||||||  |||||||||||||||
seq2  CCTGTCAGAA-CTCCACAAGTCCACAAGTATCC--TCTCTCTGTCATCTA  141

seq1  TTTATTACTATATTTCTTTTTTTGTTAATTTTTTTGTTTGAGCATGTGAG  200
      |||||||||||||||| |||||||||||  ||||||||||||||||||||
seq2  TTTATTACTATATTTC-TTTTTTGTTAA--TTTTTGTTTGAGCATGTGAG  188

seq1  TATGAATGGCCCAG-AGCGAGGCCTTACTCATTCTCAATACCCCTTACCT  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATGAATGGCCCAGAAGCGAGGCCTTACTCATTCTCAATACCCCTTACCT  238

seq1  AAAACCAGAATTTGGAAAAGAGTAGCTTCCCCTAAAACTTGTTAGTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAATTTGGAAAAGAGTAGCTTCCCCTAAAACTTGTTAGTTAAA  288

seq1  ACCAGAACAGAATTCTCAGTATTTATCATTTGATTGATTAGCACTCTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAACAGAATTCTCAGTATTTATCATTTGATTGATTAGCACTCTCAA  338

seq1  TGATCCTGTGGCAATTATTGAAAGAAAATAACCCTCTCTCATAATATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGTGGCAATTATTGAAAGAAAATAACCCTCTCTCATAATATACA  388

seq1  TACCTATAATATTTTATAAAAATCATGTATTAATCAATTATTTATAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAATATTTTATAAAAATCATGTATTAATCAATTATTTATAGTGT  438

seq1  GCCTTTTCATATGTTGCCTAGTATATGTTTTATAAAGTGGTTTTAGTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCATATGTTGCCTAGTATATGTTTTATAAAGTGGTTTTAGTCTT  488

seq1  TTAGTATTTAGAAATCAATTTCCAGCAGACTAAACATAACATGGAATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTAGAAATCAATTTCCAGCAGACTAAACATAACATGGAATTTT  538

seq1  TGGTTTGCTTTACCAAACACAAAGTTAGTGTATCCTTTTTCAGACAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCTTTACCAAACACAAAGTTAGTGTATCCTTTTTCAGACAAAAT  588

seq1  CATTTCTAAAATCATGTGAAATTCTAATCATTCTGAGTTCAAAATGTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAAATCATGTGAAATTCTAATCATTCTGAGTTCAAAATGTAGC  638

seq1  ACCAATTTCCTTGGGCGAAAACAAATAGAAGTATCTTGGGACAAATGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTCCTTGGGCGAAAACAAATAGAAGTATCTTGGGACAAATGTTT  688

seq1  TCAGACTCACAAGAAACAGTGCAATTACTTGTGAATATCCTTAAGAACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCACAAGAAACAGTGCAATTACTTGTGAATATCCTTAAGAACTG  738

seq1  TGGTTCATACAAGGTCAGTTGAATTTCAAAGCTAAGATACATTGAAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATACAAGGTCAGTTGAATTTCAAAGCTAAGATACATTGAAGAAT  788

seq1  AGAGAGAAAAATGTTCTATTCTTTTGTTTTGGCAAAGTAGCTATTAGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAAATGTTCTATTCTTTTGTTTTGGCAAAGTAGCTATTAGTAA  838

seq1  GAACAATATTCTTGTTATTTTTAACTAGCTGAGCTGAACTAATGCTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATATTCTTGTTATTTTTAACTAGCTGAGCTGAACTAATGCTAAAT  888

seq1  TCCCAATGATATTTATGTATTCAAAAAAAACCTTGGCATTCCAGTGGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGATATTTATGTATTCAAAAAAAACCTTGGCATTCCAGTGGTAA  938

seq1  TGATCTTATTACTTATAGACAGTAATAACTGAATGCATTTGTAAAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTATTACTTATAGACAGTAATAACTGAATGCATTTGTAAAATTAT  988

seq1  TCATGCAGAAAAACTGTGGCAATTCTTTGCATGGTTGCAGTAGGTTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGAAAAACTGTGGCAATTCTTTGCATGGTTGCAGTAGGTTGGAC  1038

seq1  TAATGTTTAAAGAAGAAATTACTTGACACTTAGATCTGCAGTTCTGTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTAAAGAAGAAATTACTTGACACTTAGATCTGCAGTTCTGTTCT  1088

seq1  AATTAGTTCCCGGATTTCCTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  AATTAGTTCCCGGATTTCCTGAATTC  1114


seq1: chr1_7373858_7375019
seq2: B6Ng01-206M09.g_68_1239

seq1  GAATTCTTCTGAGTGGAAAACAAAACTCTTCACATTCAAGCCAGCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGAGTGGAAAACAAAACTCTTCACATTCAAGCCAGCAGAGG  50

seq1  CTCTGGATCCGATTCTGCAGAACACAAGGACACACAGCACTATGAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCCGATTCTGCAGAACACAAGGACACACAGCACTATGAAGTGT  100

seq1  TGTCAACAGAAGAGTGCATAAGACGGGAGTCGGTGAGGGAAGAGTGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAGAAGAGTGCATAAGACGGGAGTCGGTGAGGGAAGAGTGCAAC  150

seq1  AGACAGCAAGGGCTTCTAGGGTTGTGTAAGGACAAACTCCATTCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAGGGCTTCTAGGGTTGTGTAAGGACAAACTCCATTCTTTTCC  200

seq1  CGAAAGTGAGCATGGTAAGAGAAAGCAGCAATAAGTGGTGTTGTACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGTGAGCATGGTAAGAGAAAGCAGCAATAAGTGGTGTTGTACAGTA  250

seq1  AAGCGGAGATACAGAGATGCAGTCTCAGAGAAAGAAATTGGTATTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGAGATACAGAGATGCAGTCTCAGAGAAAGAAATTGGTATTTTTCT  300

seq1  AACCCCACAAACCAGCCGCTGATAGGTTAGACTCTGTGCATCTCTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACAAACCAGCCGCTGATAGGTTAGACTCTGTGCATCTCTGTTGT  350

seq1  TCATTTCTTCCAGTCATTTTCAGGAGCCATCACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCCAGTCATTTTCAGGAGCCATCACACACACACACACACACA  400

seq1  CACACACACACACACACACACAACCACTTCTGTACAAACAGAATCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAACCACTTCTGTACAAACAGAATCTGGGG  450

seq1  GCTGCCCATTTCATCCTCACCTCTGTGTCTTTATTCAGACCATTGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCATTTCATCCTCACCTCTGTGTCTTTATTCAGACCATTGTCTTC  500

seq1  CCTTAGAGAACCTCTCCTGCACCCACCCAGGTGTACAGTCTGTGACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGAACCTCTCCTGCACCCACCCAGGTGTACAGTCTGTGACTGCT  550

seq1  TTGAGGCAGACCCTGAATTGATATACTTAGTGCTTCATTATAAAAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGACCCTGAATTGATATACTTAGTGCTTCATTATAAAAGAGCT  600

seq1  ATTATGATTCTCTTCAGTAGCCCTCAGATCATTAACCCACACAACAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATTCTCTTCAGTAGCCCTCAGATCATTAACCCACACAACAAAAT  650

seq1  ACAAAGTAAACCTCTGCAGACAGTTGTTCGTTTTGTGTTTTCTTGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAAACCTCTGCAGACAGTTGTTCGTTTTGTGTTTTCTTGCCAAC  700

seq1  TACTTCTTGATATAAAGAGAATTTCCTGTTAAACTTGGACGGCATTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTGATATAAAGAGAATTTCCTGTTAAACTTGGACGGCATTAAGT  750

seq1  GTACCCAGGCCCTCCATGAAATCTTGATTACCGACAAGATACCAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGGCCCTCCATGAAATCTTGATTACCGACAAGATACCAAAGAAC  800

seq1  CAGAATATGAAGTACAAAATGTGAAGACTAGGAGGTTAAGTTAAAATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGAAGTACAAAATGTGAAGACTAGGAGGTTAAGTTAAAATTAG  850

seq1  TAGTCAAAATAAAAGTCTATCCGACGTGACAGAAATTTAAGCAGCAAAGC  900
      |||||||| |||||||||||||||||||||||||| ||||||||| ||||
seq2  TAGTCAAATTAAAAGTCTATCCGACGTGACAGAAA-TTAAGCAGC-AAGC  898

seq1  TGCCAGGCAAACT-GGAGTGAAAAGGCAGAAACAGACCAGAAGCAGATTA  949
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TGCCAGGCAAACTGGGAGTG-AAAGGCAGAAACAGACCAGAAGCAGATTA  947

seq1  ACCCCCCAACTT-GGAGTGCACTTCC-TTCTACCAAGGCTCTGGCTCTCT  997
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ACCCCCCAACTTGGGAGTGCACTTCCTTTCTACCAAGGCTCTGGCTCTCT  997

seq1  ACAAAAT--GGAG-AAATTACTTCTTACAACTTCT-ACACAGGCTCCTCA  1043
      |||||||  |||| |||||||||||||| |||||| |||||||||||| |
seq2  ACAAAATTGGGAGAAAATTACTTCTTAC-ACTTCTAACACAGGCTCCTTA  1046

seq1  AG-AAATGCTT-GGTAGTGTC--TGCGAATAGAACC-TTATACTTGGAG-  1087
      || |||||||| |||||||||  ||||||||||||| |||||| ||||| 
seq2  AGAAAATGCTTGGGTAGTGTCCTTGCGAATAGAACCTTTATAC-TGGAGT  1095

seq1  TTTTTGTGGAAGGCA-ATGGTTCAGGATTCTGTTCATATTCAGTTGT-CT  1135
      |||||||||||| ||  |||||||| ||||||||||||||||||||| ||
seq2  TTTTTGTGGAAGCCATGTGGTTCAGAATTCTGTTCATATTCAGTTGTCCT  1145

seq1  AGACTTAA-TGAGCATCTCGTCAGAACA  1162
      |||||||| ||| ||||||||| |||||
seq2  AGACTTAATTGACCATCTCGTC-GAACA  1172


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