BAC Information

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BAC

Clone NameB6Ng01-207D02
Chromosome1 (Build37)
Map Location 111,949,720 - 111,950,763
singlet/doubletsinglet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207D02.bB6Ng01-207D02.g
ACCGA026413GA026414
length1,1131,161
definitionB6Ng01-207D02.b B6Ng01-207D02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
acctgaaattcgaaattaaagagaaaaatttgtcatagcctacttataaa
ttaacaacataccccaccattctagtaagcaagactaaagtttgtttttt
gctctctagacacagaggcttggtagtttctattttaccacaaaaatatg
taactattttttaaaacatcatatctgaatagtataagtagtttaatgaa
ccaagactcacaagaaatatatctgtatgaatggttgtaggaagagttat
tcaaatagcagtcatgaagtacagtattaaaaatatgtttctcaccatct
ttaaaatagaacctattatatttttgaaaataaaattgagttttctttgg
tcaacatgaataatgtaattccacagcatacacactagactgattagtgt
agtttcagctctataagtcagacaaaaattctacagtctgcggcaagact
aaaagttcaggccatttggaacacgttacatagagtctgaactttgtatc
tccagtctgacattcagttcaacatacacgctttctacatttacatggct
catagcaaaaccaaatgctttcacttactcgtcttcaacactagactggt
taattatgatcatttctactctattaaaattttcagatattttccaaact
ttatgatttgtttgatatacttttggccaaatcatgcattacaaaatgta
ttgaaaatttaatgatgacaacaatttgtattttattttcttatgtacat
tataattattgttcacaaacacattcaacatatttgcccttgcttttatt
tgagaacgagtaatatttcaacttttgggaaatatgataaacataatcat
ttcctttaaaatattcagctagataatcctttcaggtgtcatcttttttt
cggtgacaaaatattccaatgaggaaaattttaaaatattgagacaaaca
gcctctccacaagtaagaggcttcttgttttttaatacagaaaacaaaag
tgtgctagcagattatggaaaatgttcctaataaagtcagggaatcacca
ttgtgaaatatagttcgtgaaatgtcaattttacttaagggttttttatg
gaatctaagttaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagcgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaaggatggaccatgtagagactgccatatccagggatccaccccatatt
cagcttccaaatgctgacaccattgcatacactagcaagattttactgaa
aggacccagatgttagctgtctcttgtgagactatgccggggccctagca
aacactgaagtggatgctcacagtcagcttaatggatggatcacagggct
cccaatgggaggagctagagaagtacccaaggagctaagggatctccacc
ctatagtggaacaacattatgaactaaccagtaccctgggctctgacttc
tagctgcatatgtatcaaaagaattgcctattcgcatccactggcaagga
agccatgaactgctgacctttgagtgccgtaccaggaaccgctatggatc
ccataacgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111949720_111950763
seq2: B6Ng01-207D02.b_43_1113 (reverse)

seq1  TTAAC-TAGATT-CATAAAAA--CACTAAGTAAAA-TGACA-TTCACG-A  43
      ||||| |||||| ||||||||  |  ||||||||| ||||| |||||| |
seq2  TTAACTTAGATTCCATAAAAAACCCTTAAGTAAAATTGACATTTCACGAA  50

seq1  CTATA--TCACA--TGTGATT-CCTGACTTTATTAGG-ACATTTT-CATA  86
      |||||  |||||   |||||| ||||||||||||||| ||||||| ||||
seq2  CTATATTTCACAATGGTGATTCCCTGACTTTATTAGGAACATTTTCCATA  100

seq1  ATCTGCTTGCACACTTTTTGTTTTCTGTATTAAAAA--CAGAAGCCTCTT  134
      ||||||| |||||| |||||||||||||||||||||   |||||||||||
seq2  ATCTGCTAGCACAC-TTTTGTTTTCTGTATTAAAAAACAAGAAGCCTCTT  149

seq1  -CTTGTGGAGAGGCTTGTTTGTCTCAATATTTT-AAATTTTCCTCATT-G  181
       ||||||||||||| |||||||||||||||||| |||||||||||||| |
seq2  ACTTGTGGAGAGGC-TGTTTGTCTCAATATTTTAAAATTTTCCTCATTGG  198

seq1  AATATTTTGTCACCG-AAAAAAGATGACACCTG-AAGGATTATCTAGCTG  229
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AATATTTTGTCACCGAAAAAAAGATGACACCTGAAAGGATTATCTAGCTG  248

seq1  AATATTTTAAAGGAAATGATTATGTTTATCATATTTCCC-AAAGTTGAAA  278
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATATTTTAAAGGAAATGATTATGTTTATCATATTTCCCAAAAGTTGAAA  298

seq1  TATTACTCGTTCTCAAATAAAAGCAAGGGCAAATATGTTGAATGTGTTTG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCGTTCTCAAATAAAAGCAAGGGCAAATATGTTGAATGTGTTTG  348

seq1  TGAACAATAATTATAATGTACATAAGAAAAT-AAATAC-AATTGTTGTCA  376
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TGAACAATAATTATAATGTACATAAGAAAATAAAATACAAATTGTTGTCA  398

seq1  TCATTAAATTTTCAATACATTTTGTAATGCATGATTTGGCC-AAAGTATA  425
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATTAAATTTTCAATACATTTTGTAATGCATGATTTGGCCAAAAGTATA  448

seq1  TCAAACAAATCATAAAGTTTGGAAAATATCTGAAAATTTTAATAGAGTAG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAATCATAAAGTTTGGAAAATATCTGAAAATTTTAATAGAGTAG  498

seq1  AAATGATCATAATTAACCAGTCTAGTGTTGAAGACGAGTAAGTGAAAGCA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCATAATTAACCAGTCTAGTGTTGAAGACGAGTAAGTGAAAGCA  548

seq1  TTTGGTTTTGCTATGAGCCATGTAAATGTAGAAAGCGTGTATGTTGAACT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGCTATGAGCCATGTAAATGTAGAAAGCGTGTATGTTGAACT  598

seq1  GAATGTCAGACTGGAGATACAAAGTTCAGACTCTATGTAACGTGTTCCAA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCAGACTGGAGATACAAAGTTCAGACTCTATGTAACGTGTTCCAA  648

seq1  ATGGCCTGAACTTTTAGTCTTGCCGCAGACTGTAGAATTTTTGTCTGACT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGAACTTTTAGTCTTGCCGCAGACTGTAGAATTTTTGTCTGACT  698

seq1  TATAGAGCTGAAACTACACTAATCAGTCTAGTGTGTATGCTGTGGAATTA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCTGAAACTACACTAATCAGTCTAGTGTGTATGCTGTGGAATTA  748

seq1  CATTATTCATGTTGACCAAAGAAAACTCAATTTTATTTTCAAAAATATAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCATGTTGACCAAAGAAAACTCAATTTTATTTTCAAAAATATAA  798

seq1  TAGGTTCTATTTTAAAGATGGTGAGAAACATATTTTTAATACTGTACTTC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTATTTTAAAGATGGTGAGAAACATATTTTTAATACTGTACTTC  848

seq1  ATGACTGCTATTTGAATAACTCTTCCTACAACCATTCATACAGATATATT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCTATTTGAATAACTCTTCCTACAACCATTCATACAGATATATT  898

seq1  TCTTGTGAGTCTTGGTTCATTAAACTACTTATACTATTCAGATATGATGT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGAGTCTTGGTTCATTAAACTACTTATACTATTCAGATATGATGT  948

seq1  TTTAAAAAATAGTTACATATTTTTGTGGTAAAATAGAAACTACCAAGCCT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATAGTTACATATTTTTGTGGTAAAATAGAAACTACCAAGCCT  998

seq1  CTGTGTCTAGAGAGCAAAAAACAAACTTTAGTCTTGCTTAC-AG-ATGTT  1023
      ||||||||||||||||||||||||||||||||||||||||| || ||| |
seq2  CTGTGTCTAGAGAGCAAAAAACAAACTTTAGTCTTGCTTACTAGAATGGT  1048

seq1  --AGTATGTTGTTAATTTATAAG  1044
         ||||||||||||||||||||
seq2  GGGGTATGTTGTTAATTTATAAG  1071