BAC Information

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BAC

Clone NameB6Ng01-208B01
Chromosome1 (Build37)
Map Location 66,662,403 - 66,768,774
singlet/doubletdoublet
Overlap geneRpe, 1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B01.bB6Ng01-208B01.g
ACCGA027045GA027046
length1,1611,080
definitionB6Ng01-208B01.b B6Ng01-208B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,767,607 - 66,768,774)(66,662,403 - 66,663,498)
sequence
gaattcagaactgtaaaggtcaagtgcatggctctttctgtcttttaaaa
accaagtaacaaatgtgataggacgcttagtgaccatgaagcactgggtt
taagccttggataaaacctttcctaatgacaacactgggaagatcctcag
atgaccgtgggtagaaatgctgagaaaaaagcagtactgacctagcgata
ccctgtattcatttatttccctgctagagcttacagtaaaaatgtggaag
ggcaggacttggttctgaaggaacactcaagtgaacttggcagtgctcag
cagggtactgcagaaagtccttttgaactcccagcagaaagccacagtct
gtgtgctcaggactccctttctttaaatgatggtcaagaagacaaggtaa
gcctgagttatttgactgttttcttttaattgccttttcactttatttca
cttatgtgtagaaactgttagctgtaaagggcttcattacagatcaaagt
caatgagatgttcagtctagtatgtccaggaaggtctatagtggaatgcc
ctagtcccattatattaacaatttctttttatttaatttttggaggcata
gcatatcagtaaaaactttcatctatctatgtacttaactgttaggcaat
ggagattctatcaccttgctttaaagaacaaatctttccactggggactc
acactgggtgcacagtaaacaccattactctttttctgcttgtaacaagt
gccacataaatccagtcctacttttaggaagtatcctagcactatacaaa
gttcatgcagctttcccacttgcactaggtcagacatggagtggaacttt
agaaatgcatatccaagttgtagaaaatcagcaagaaagagtcaatgtgt
atctgtaataacagtgaggtagaaaggaagtacagcccaccttacaggct
ttgctcagatatccttacattgaatagagacagttattctgaggcagtat
ttttcttcttcttagcagaagcaaaatgaagaaaacatttcctaaaggtc
agaatctcagatatccatatgggacataagagaaaacaaaaacttgacta
tatacttagaggaatacctataaacctgacatgatagattctatattaag
ttaggtgaaac

gaattctctctcctataatctcaagatatttcataagagtctgtagagaa
cctcatgagggtctactctctctcctggtggaaatgtcaacaggtcatct
cctgcatgtgatcacagttgctctgctgcacaacagtatgctcgtgtcca
tcccaaagcaaacagctgaactgtagttctctatagagatgggctctgtt
ctttgtctttgtttattcagctcagatttctctacagattcttgcttgat
gtctaactctaaccatttatgtagtccagtgagatccaaaactgcagaaa
ccacttctagatgccatggaaaacaatgcagcattctatttaatgcatag
atttttttttttgtcttgaggttcattttaaaaacaaaaacccaaaaaac
atttcatcatagttttgtctgagtcaaaaatcacaccatataggtacttc
aggattctcccaaaatacaccaagcctctcttacacatgtttccatctct
ggtatctactgcctgactctaataaagtcgtccaaattctgtgaccagca
tgtggccctgatgagaaagccacactctaggtgtcctggaagccaccatg
cttcttcagtccacatgcaagcttgtactcttcccaggggagacagcaga
cagaagaaaacactactctgtggtttctagcacattggctttaatatcag
cactcagtgtttctatcgttgaactggacactgctgtgtcctataattta
atggagaagaagtatttacaatttatcataaaggatacaatggctagtca
gaggacaaagggatacacttataaaagtctaaaatcatgacccacctgcc
ccccagaaaatacttagcataaaaatcacagtgaaatgattatttacaat
catgtgctaagatgcatcaagggaggagactaaacagacccagtattact
cttattaaattggatatgggtatttctgctttctttatagtttctgtctt
tacagattctctgataggcttgtgtattaattctgagtaaacgcacagca
caaaggattttaatacacagtcttttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66767607_66768774
seq2: B6Ng01-208B01.b_47_1207 (reverse)

seq1  GTTTCACCTAATTTAATTATTAAGGAATCTATCATGTCAGTTTTTATAGT  50
      ||||||||||| ||||    ||  ||||||||||||||||  ||||||| 
seq2  GTTTCACCTAACTTAA----TATAGAATCTATCATGTCAG-GTTTATAGG  45

seq1  TATTCTTCT-AGTATATAAGTTCAAGTTTTTGTTTTCCTCTTATGT-CCA  98
      ||||| ||| ||||||||   ||||||||||||||| ||||||||| |||
seq2  TATTCCTCTAAGTATATA--GTCAAGTTTTTGTTTT-CTCTTATGTCCCA  92

seq1  TATGGATATCCTGAGAATTTCCTGA-CTTTAGGAATTG-TTTCTTCATTT  146
      ||||||||| ||||||   | |||| ||||||||| || |||||||||||
seq2  TATGGATAT-CTGAGA---TTCTGACCTTTAGGAAATGTTTTCTTCATTT  138

seq1  TGCTTCTGCTAAGAAGA--GAAAATACTGCCTCAGAATACTTGTCTCTAT  194
      |||||||||||||||||   |||||||||||||||||||  |||||||||
seq2  TGCTTCTGCTAAGAAGAAGAAAAATACTGCCTCAGAATAACTGTCTCTAT  188

seq1  TCAATGTAAGGATATCTGAGCAAAGCCTTGTAAGGTGGGCTGTACTTCCT  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAATGTAAGGATATCTGAGCAAAGCC-TGTAAGGTGGGCTGTACTTCCT  237

seq1  TTCTACCTCACTGTTATTACAGATACACATTGACTCTTTCTTGCTGATTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCACTGTTATTACAGATACACATTGACTCTTTCTTGCTGATTT  287

seq1  TCTACAACTTGGATATGCATTTCTAAAGTTCCACTCCATGTCTGACCTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACTTGGATATGCATTTCTAAAGTTCCACTCCATGTCTGACCTAG  337

seq1  TGCAAGTGGGAAAGCTGCATGAACTTTGTATAGTGCTAGGATACTTCCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGGGAAAGCTGCATGAACTTTGTATAGTGCTAGGATACTTCCTA  387

seq1  AAAGTAGGACTGGATTTATGTGGCACTTGTTACAAGCAGAAAAAGAGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGACTGGATTTATGTGGCACTTGTTACAAGCAGAAAAAGAGTAA  437

seq1  TGGTGTTTACTGTGCACCCAGTGTGAGTCCCCAGTGGAAAGATTTGTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTACTGTGCACCCAGTGTGAGTCCCCAGTGGAAAGATTTGTTCT  487

seq1  TTAAAGCAAGGTGATAGAATCTCCATTGCCTAACAGTTAAGTACATAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAAGGTGATAGAATCTCCATTGCCTAACAGTTAAGTACATAGAT  537

seq1  AGATGAAAGTTTTTACTGATATGCTATGCCTCCAAAAATTAAATAAAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGTTTTTACTGATATGCTATGCCTCCAAAAATTAAATAAAAAG  587

seq1  AAATTGTTAATATAATGGGACTAGGGCATTCCACTATAGACCTTCCTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAATATAATGGGACTAGGGCATTCCACTATAGACCTTCCTGGA  637

seq1  CATACTAGACTGAACATCTCATTGACTTTGATCTGTAATGAAGCCCTTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGACTGAACATCTCATTGACTTTGATCTGTAATGAAGCCCTTTA  687

seq1  CAGCTAACAGTTTCTACACATAAGTGAAATAAAGTGAAAAGGCAATTAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACAGTTTCTACACATAAGTGAAATAAAGTGAAAAGGCAATTAAA  737

seq1  AGAAAACAGTCAAATAACTCAGGCTTACCTTGTCTTCTTGACCATCATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGTCAAATAACTCAGGCTTACCTTGTCTTCTTGACCATCATTT  787

seq1  AAAGAAAGGGAGTCCTGAGCACACAGACTGTGGCTTTCTGCTGGGAGTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGGAGTCCTGAGCACACAGACTGTGGCTTTCTGCTGGGAGTTC  837

seq1  AAAAGGACTTTCTGCAGTACCCTGCTGAGCACTGCCAAGTTCACTTGAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACTTTCTGCAGTACCCTGCTGAGCACTGCCAAGTTCACTTGAGT  887

seq1  GTTCCTTCAGAACCAAGTCCTGCCCTTCCACATTTTTACTGTAAGCTCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCAGAACCAAGTCCTGCCCTTCCACATTTTTACTGTAAGCTCTA  937

seq1  GCAGGGAAATAAATGAATACAGGGTATCGCTAGGTCAGTACTGCTTTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAATAAATGAATACAGGGTATCGCTAGGTCAGTACTGCTTTTTT  987

seq1  CTCAGCATTTCTACCCACGGTCATCTGAGGATCTTCCCAGTGTTGTCATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTTCTACCCACGGTCATCTGAGGATCTTCCCAGTGTTGTCATT  1037

seq1  AGGAAAGGTTTTATCCAAGGCTTAAACCCAGTGCTTCATGGTCACTAAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTTTTATCCAAGGCTTAAACCCAGTGCTTCATGGTCACTAAGC  1087

seq1  GTCCTATCACATTTGTTACTTGGTTTTTAAAAGACAGAAAGAGCCATGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATCACATTTGTTACTTGGTTTTTAAAAGACAGAAAGAGCCATGCA  1137

seq1  CTTGACCTTTACAGTTCTGAATTC  1168
      ||||||||||||||||||||||||
seq2  CTTGACCTTTACAGTTCTGAATTC  1161


seq1: chr1_66662403_66663498
seq2: B6Ng01-208B01.g_67_1146

seq1  GAATTCTCTCTCCTATAATCTCAAGATATTTCATAAGAGTCTGTAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCTATAATCTCAAGATATTTCATAAGAGTCTGTAGAGAA  50

seq1  CCTCATGAGGGTCTACTCTCTCTCCTGGTGGAAATGTCAACAGGTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAGGGTCTACTCTCTCTCCTGGTGGAAATGTCAACAGGTCATCT  100

seq1  CCTGCATGTGATCACAGTTGCTCTGCTGCACAACAGTATGCTCGTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTGATCACAGTTGCTCTGCTGCACAACAGTATGCTCGTGTCCA  150

seq1  TCCCAAAGCAAACAGCTGAACTGTAGTTCTCTATAGAGATGGGCTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGCAAACAGCTGAACTGTAGTTCTCTATAGAGATGGGCTCTGTT  200

seq1  CTTTGTCTTTGTTTATTCAGCTCAGATTTCTCTACAGATTCTTGCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTTGTTTATTCAGCTCAGATTTCTCTACAGATTCTTGCTTGAT  250

seq1  GTCTAACTCTAACCATTTATGTAGTCCAGTGAGATCCAAAACTGCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACTCTAACCATTTATGTAGTCCAGTGAGATCCAAAACTGCAGAAA  300

seq1  CCACTTCTAGATGCCATGGAAAACAATGCAGCATTCTATTTAATGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTAGATGCCATGGAAAACAATGCAGCATTCTATTTAATGCATAG  350

seq1  ATTTTTTTTTTTGTCTTGAGGTTCATTTTAAAAACAAAAACCCAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTGTCTTGAGGTTCATTTTAAAAACAAAAACCCAAAAAAC  400

seq1  ATTTCATCATAGTTTTGTCTGAGTCAAAAATCACACCATATAGGTACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCATAGTTTTGTCTGAGTCAAAAATCACACCATATAGGTACTTC  450

seq1  AGGATTCTCCCAAAATACACCAAGCCTCTCTTACACATGTTTCCATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTCCCAAAATACACCAAGCCTCTCTTACACATGTTTCCATCTCT  500

seq1  GGTATCTACTGCCTGACTCTAATAAAGTCGTCCAAATTCTGTGACCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTACTGCCTGACTCTAATAAAGTCGTCCAAATTCTGTGACCAGCA  550

seq1  TGTGGCCCTGATGAGAAAGCCACACTCTAGGTGTCCTGGAAGCCACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCTGATGAGAAAGCCACACTCTAGGTGTCCTGGAAGCCACCATG  600

seq1  CTTCTTCAGTCCACATGCAAGCTTGTACTCTTCCCAGGGGAGACAGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGTCCACATGCAAGCTTGTACTCTTCCCAGGGGAGACAGCAGA  650

seq1  CAGAAGAAAACACTACTCTGTGGTTTCTAGCACATTGGCTTTAATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAACACTACTCTGTGGTTTCTAGCACATTGGCTTTAATATCAG  700

seq1  CACTCAGTGTTTCTATCGTTGAACTGGACACTGCTGTGTCCTATAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTGTTTCTATCGTTGAACTGGACACTGCTGTGTCCTATAATTTA  750

seq1  ATGGAGAAGAAGTATTTACAATTTATCATAAAGGATACAATGGCTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAGAAGTATTTACAATTTATCATAAAGGATACAATGGCTAGTCA  800

seq1  GAGGACAAAGGGATACACTTATAAAAGTCTAAAATCATGACCCACCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGGGATACACTTATAAAAGTCTAAAATCATGACCCACCTGCC  850

seq1  CCCCAGAAAATACTTAGCATAAAAATCACAGTGAAATGATTATTTACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAAATACTTAGCATAAAAATCACAGTGAAATGATTATTTACAAT  900

seq1  CATGTGCTAAGATGCATCAAGGGAGGAAGACTAAACAGAACCCAGTAATT  950
      |||||||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  CATGTGCTAAGATGCATCAAGGGAGG-AGACTAAACAG-ACCCAGT-ATT  947

seq1  ACTCTTATTAAATTGGGAATATGGGTATTTTCTGCTTTCTTTATAGTTTC  1000
      ||||||||||||||||  ||||||||| ||||||||||||||||||||||
seq2  ACTCTTATTAAATTGG--ATATGGGTA-TTTCTGCTTTCTTTATAGTTTC  994

seq1  TGTCTTTTACAGATTCTCTGATAGGCTTGTGTATTATTTTCTGAGTTAAA  1050
      |||| |||||||||||||||||||||||||||||||  ||||||||   |
seq2  TGTC-TTTACAGATTCTCTGATAGGCTTGTGTATTA-ATTCTGAGT---A  1039

seq1  AACGCACAGCACAAAGGAATTTTTAAATACCACAAGTCTTTTCTGA  1096
      ||||||||||||||||||   ||| |||| ||| ||||||||||||
seq2  AACGCACAGCACAAAGGA---TTTTAATA-CAC-AGTCTTTTCTGA  1080


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