BAC Information

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BAC

Clone NameB6Ng01-208H13
Chromosome1 (Build37)
Map Location 82,481,797 - 82,641,391
singlet/doubletdoublet
Overlap geneCol4a4, Col4a3
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H13.bB6Ng01-208H13.g
ACCGA027344GA027345
length1291,208
definitionB6Ng01-208H13.b B6Ng01-208H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,641,263 - 82,641,391)(82,481,797 - 82,482,990)
sequence
actttgtagaccaggctggccttgaactcagaaatctgcctgcctctgcc
tcccaagtgctgggattaaaggcattcaccaccaccgcctgttgatgaag
gggtttttgatgggctcttggctggggtg
gaattccttaattgaatgactggttcttatggaacatggggacactctct
agagatgtgggtctggtcatttgtaccagctgcaatttgagatgcttcga
tcacgacatagacggcttctgaaacatgcgtggagaggaagtcatgatat
gtgtacgtatgccagatcctatctggtacctttgacctgtgtggaaaata
agaactctctgaagcttccgtgtctcactgcctagagtctaagagtcgct
tctgagttctaatttgtgaagcaatttatcattaacaagatactcactct
caacgctagaattcctggaactctgaatttgctagctgggaacattttcc
aagccatacctttaggtcctcttgctccatcatctcctgggaatccaggg
ggtcctggagaacctggatcaccctgacaattaatggaacaaaaataaga
ccctcgttgggttttccatgctgtggcacaaagacattacagttttctgc
agccaagttagtgtttgtaattggcaatggtgaaggaaactgttagtgtc
ttgtaagcataatactaactatgtctatgttttatgagcgggtaaaactc
ctccagaattagagatgttcttcccagcaaagaagtatagactttgttat
acacaattaccaaagagtaactgtcatacaacttgaatttaagctttgag
caaaccacttgatataaaatgaaatactgaaagatgtgttgtatcataaa
ttttaaagatccattttattccaaaagatggaaagccaaaactatgttat
acatttttccagaaagtttgatacatgtcgctacattatgttttctggtt
ttctcaagggggatgttaactcatgattataaaggccaagtgtaatttaa
aggaaaaaatatgacatccccaagcagatgggaaggctgagaaaccagaa
ctggtcagtgttcaggattttttttttctttttccataagcatcagttca
cgaggacaaaggctctgtgagtaatttaaaacaatggggcgggctggaat
ggtggtgatcactgacttgctccttctgcagccaggacagcagtttctaa
acactggtcagaaatctcattatccttcagaaggttctaattttccttca
tgtcacttacctccaatagcccttaaatgactaggccacatactgtgctc
ataattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82641263_82641391
seq2: B6Ng01-208H13.b_49_177 (reverse)

seq1  CACCCCAGCCAAGAGCCCATCAAAAACCCCTTCATCAACAGGCGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGCCAAGAGCCCATCAAAAACCCCTTCATCAACAGGCGGTGGTG  50

seq1  GTGAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT  100

seq1  GAGTTCAAGGCCAGCCTGGTCTACAAAGT  129
      |||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGCCTGGTCTACAAAGT  129

seq1: chr1_82481797_82482990
seq2: B6Ng01-208H13.g_66_1273

seq1  GAATTCCTTAATTGAATGACTGGTTCTTATGGAACATGGGGACACTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATTGAATGACTGGTTCTTATGGAACATGGGGACACTCTCT  50

seq1  AGAGATGTGGGTCTGGTCATTTGTACCAGCTGCAATTTGAGATGCTTCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGGGTCTGGTCATTTGTACCAGCTGCAATTTGAGATGCTTCGA  100

seq1  TCACGACATAGACGGCTTCTGAAACATGCGTGGAGAGGAAGTCATGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGACATAGACGGCTTCTGAAACATGCGTGGAGAGGAAGTCATGATAT  150

seq1  GTGTACGTATGCCAGATCCTATCTGGTACCTTTGACCTGTGTGGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGTATGCCAGATCCTATCTGGTACCTTTGACCTGTGTGGAAAATA  200

seq1  AGAACTCTCTGAAGCTTCCGTGTCTCACTGCCTAGAGTCTAAGAGTCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCTGAAGCTTCCGTGTCTCACTGCCTAGAGTCTAAGAGTCGCT  250

seq1  TCTGAGTTCTAATTTGTGAAGCAATTTATCATTAACAAGATACTCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCTAATTTGTGAAGCAATTTATCATTAACAAGATACTCACTCT  300

seq1  CAACGCTAGAATTCCTGGAACTCTGAATTTGCTAGCTGGGAACATTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTAGAATTCCTGGAACTCTGAATTTGCTAGCTGGGAACATTTTCC  350

seq1  AAGCCATACCTTTAGGTCCTCTTGCTCCATCATCTCCTGGGAATCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATACCTTTAGGTCCTCTTGCTCCATCATCTCCTGGGAATCCAGGG  400

seq1  GGTCCTGGAGAACCTGGATCACCCTGACAATTAATGGAACAAAAATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGAGAACCTGGATCACCCTGACAATTAATGGAACAAAAATAAGA  450

seq1  CCCTCGTTGGGTTTTCCATGCTGTGGCACAAAGACATTACAGTTTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGTTGGGTTTTCCATGCTGTGGCACAAAGACATTACAGTTTTCTGC  500

seq1  AGCCAAGTTAGTGTTTGTAATTGGCAATGGTGAAGGAAACTGTTAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTTAGTGTTTGTAATTGGCAATGGTGAAGGAAACTGTTAGTGTC  550

seq1  TTGTAAGCATAATACTAACTATGTCTATGTTTTATGAGCGGGTAAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCATAATACTAACTATGTCTATGTTTTATGAGCGGGTAAAACTC  600

seq1  CTCCAGAATTAGAGATGTTCTTCCCAGC-AAGAAGTATAGACTTTGTTAT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCCAGAATTAGAGATGTTCTTCCCAGCAAAGAAGTATAGACTTTGTTAT  650

seq1  ACACAATTACCAAAGAGTAACTGTCATACAACTTGAATTTAAGCTTTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTACCAAAGAGTAACTGTCATACAACTTGAATTTAAGCTTTGAG  700

seq1  CAAACCACTTGATATAAAATGAAATACTGAAAGATGTGTTGTATCATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTTGATATAAAATGAAATACTGAAAGATGTGTTGTATCATAAA  750

seq1  TTTTAAAGATCCATTTTATTCCAAAAGATGGAAAGCCAAAACTATGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATCCATTTTATTCCAAAAGATGGAAAGCCAAAACTATGTTAT  800

seq1  ACA-TTTTCCAG-AAGTTTGATACATGTCGCTACATTATGTTTTCTGG-T  846
      ||| |||||||| ||||||||||||||||||||||||||||||||||| |
seq2  ACATTTTTCCAGAAAGTTTGATACATGTCGCTACATTATGTTTTCTGGTT  850

seq1  TTCTCAAGGGGGATGTT-ACTCATGATTATAAAGGCCAAGTGTATTTTAA  895
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TTCTCAAGGGGGATGTTAACTCATGATTATAAAGGCCAAGTGTAATTTAA  900

seq1  AGGAAAAAATATGACATCCCCAAGCAGATGGGAAGGCTGAGAAACCAGAA  945
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGAAAAAATATGACATCCCCAAGCAGATGGGAAGGCTGAGAAACCAG-A  949

seq1  ACTGGTCAGTGTTCAGGA-TTTTTTTTTCTTTTCCAATAAAGCATCAG-T  993
      |||||||||||||||||| |||||||||||||| | || ||||||||| |
seq2  ACTGGTCAGTGTTCAGGATTTTTTTTTTCTTTTTCCAT-AAGCATCAGTT  998

seq1  CACGAGG-CAAAGGCTCTGTGAGTTATTT-AAACA--TGGGCGGGCTGGA  1039
      ||||||| |||||||||||||||| |||| |||||   ||||||||||||
seq2  CACGAGGACAAAGGCTCTGTGAGTAATTTAAAACAATGGGGCGGGCTGGA  1048

seq1  AT-GTGTGAATCACCTGACTTGCTCC-TCTGCAG-CAGGACAGCCAGTTC  1086
      || |||   |||| |||||||||||| ||||||| |||||||||   |||
seq2  ATGGTGGTGATCA-CTGACTTGCTCCTTCTGCAGCCAGGACAGCAGTTTC  1097

seq1  TAAACACTGGTCAGAAATCTCATAACCTTCCAGAAGGTTCTATTCTTCCT  1136
      ||||||||||||||||||||||| | | | |||||||||||| | |||||
seq2  TAAACACTGGTCAGAAATCTCATTATCCTTCAGAAGGTTCTAATTTTCCT  1147

seq1  TCATGTCACCTTACTTTCAAATAG-CCATAAATGACAAGGGCACATACTG  1185
      |||||||| |||||  || ||||| || |||||||| ||| |||||||||
seq2  TCATGTCA-CTTAC-CTCCAATAGCCCTTAAATGACTAGGCCACATACTG  1195

seq1  -GC---TAATTCT  1194
       ||   |||||||
seq2  TGCTCATAATTCT  1208