BAC Information

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BAC

Clone NameB6Ng01-208I03
Chromosome1 (Build37)
Map Location 98,620,988 - 98,791,004
singlet/doubletdoublet
Overlap geneSlco4c1, EG329217
Upstream geneGm1833
Downstream geneSlco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I03.bB6Ng01-208I03.g
ACCGA027371GA027372
length1,1361,156
definitionB6Ng01-208I03.b B6Ng01-208I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,620,988 - 98,622,118)(98,789,849 - 98,791,004)
sequence
gaattcttatacataaaacctttaatctatgtaaatataacaataaaaat
agtataataataattaccactccattttaattacttcattcatgtatgaa
taactttggattttcagaaaagtgtcaaaataccaagtaagaggtgccac
tcatgccaacttcacaatattatcctgtagaccgaaatcaagaatttgag
tgattgacagagatctaaatatagaagtaaagtaatattgaaataataga
gggatggtgtctcttgcatcttataaagagtggactcagttttacataat
tagcatgatcataaaaggtggattagagataaggttatatcctaaagatg
tttaataaaacctgatgtccacaaaaagataaataaaataatgagccaac
aaggtacaaatctacctgcatcattatatgaaataaatgaaatatgatta
gtagccttacagaaatttctccaataatatattcttcccactttctataa
tgttggttttcagacatatctattagctgaagacaattaattgactgttc
tcttaaggactccatagtatctctggtcaaagggagaaaacagttcttct
aattggaattcttactttgttgctttttctccatctcttttagaaataaa
acaaaacactttattcattctttgtgagtttcacatcatgcacctcagtc
ctattcatctttccatcccctcttatccattctttgcccttgcaacttcc
atccccaaccaaataaaacacacacacacacacacacacacacacacaca
cacacacacacagcaaagaaacaaacaatgaacaaaacaaaataaagcat
agaaagcgtcctgccctagaagctacagaatatcacattgtgtcctacag
tatatccttctgtccatatagcttcacttggaaatgttcattgcaatgag
tcatttgtctggccttgagtagctggtttctgtgacaccatcaatattgg
atccacaccagaactccaccttgtttatcctgttgttttctttctgtcag
gcggtcctgcaagcttcaagatcagcactagctgcccctttcaatatgcc
ccacagttcacagaatggagctaaggtgtggagtgg

gaattcactgtgtggtccagattgatttcaaagcaactagccaaagtacc
ctgagaaatcgatggagggtgctcagtgccaactgagacagctgtgatac
ccctccaaggctcagagaacagcatggaaaactgggggtgtaaataatgt
aagaggtaagggtgagaagcacagcaagagtctggacatgacatgtggac
aacactaataaactctctgtagccatggctgtttgcacaaaacctgcatg
aaactgggcctatcagcatgtaatcacacataaaagaagaacccaagaag
accttgacttccctcagggacttctggtaattgatgctgttgagagagga
gtgtcagtttcttcagtgtgaaactttcaaacagctgaaatatggaagga
aatcagatcatcctgctccagcctgcttagtgctggtatgtgccaccaaa
gctgcccagtcctttaggcccttcactgtcacagaataaattaaagcaag
gacagtgacatcagtcaggaggttttagggatcaggctgtaccgaaagag
atgactctgaacaatagctgtacagtgagaacagtggtcagatcccaggc
tcaataactctaatggcatgaatgacagaattgtagattggtagaagaaa
tggaagaaataaacaataaattaatgtcagcaatcttagccttgagctgg
gcatggtggtgcatgcctttaaacacaccgagttcaaggccttcttctac
agagctcctgctacaaagctagttccaggacagccagggctacacaggca
aacctcgacacacacccccaaaagacacataaataaataaaaagtaaata
aactttaaaaataatcttagccatggacgttgaacagcagaaatgtatct
gagatgtatagagtcctggggcaaaatttaaagtgttcctatactatagt
tttgataatatgtctgtcaccccaactcctgggagtggcagatcctagac
attgagctagtctaccttaaaatacctagtgccagaatattgttctgcaa
gtagaacctgtctcaaaaaaaaaaaaggtggagctgctgtttatttatct
tttggaaaaccttaataaacatcaaggaaattgtccataatagcctactt
gtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98620988_98622118
seq2: B6Ng01-208I03.b_47_1182

seq1  GAATTCTTATACATAAAACCTTTAATCTATGTAAATATAACAATAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATACATAAAACCTTTAATCTATGTAAATATAACAATAAAAAT  50

seq1  AGTATAATAATAATTACCACTCCATTTTAATTACTTCATTCATGTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATAATAATTACCACTCCATTTTAATTACTTCATTCATGTATGAA  100

seq1  TAACTTTGGATTTTCAGAAAAGTGTCAAAATACCAAGTAAGAGGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGGATTTTCAGAAAAGTGTCAAAATACCAAGTAAGAGGTGCCAC  150

seq1  TCATGCCAACTTCACAATATTATCCTGTAGACCGAAATCAAGAATTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCAACTTCACAATATTATCCTGTAGACCGAAATCAAGAATTTGAG  200

seq1  TGATTGACAGAGATCTAAATATAGAAGTAAAGTAATATTGAAATAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAGAGATCTAAATATAGAAGTAAAGTAATATTGAAATAATAGA  250

seq1  GGGATGGTGTCTCTTGCATCTTATAAAGAGTGGACTCAGTTTTACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTGTCTCTTGCATCTTATAAAGAGTGGACTCAGTTTTACATAAT  300

seq1  TAGCATGATCATAAAAGGTGGATTAGAGATAAGGTTATATCCTAAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGATCATAAAAGGTGGATTAGAGATAAGGTTATATCCTAAAGATG  350

seq1  TTTAATAAAACCTGATGTCCACAAAAAGATAAATAAAATAATGAGCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAACCTGATGTCCACAAAAAGATAAATAAAATAATGAGCCAAC  400

seq1  AAGGTACAAATCTACCTGCATCATTATATGAAATAAATGAAATATGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAAATCTACCTGCATCATTATATGAAATAAATGAAATATGATTA  450

seq1  GTAGCCTTACAGAAATTTCTCCAATAATATATTCTTCCCACTTTCTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTACAGAAATTTCTCCAATAATATATTCTTCCCACTTTCTATAA  500

seq1  TGTTGGTTTTCAGACATATCTATTAGCTGAAGACAATTAATTGACTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTTCAGACATATCTATTAGCTGAAGACAATTAATTGACTGTTC  550

seq1  TCTTAAGGACTCCATAGTATCTCTGGTCAAAGGGAGAAAACAGTTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGACTCCATAGTATCTCTGGTCAAAGGGAGAAAACAGTTCTTCT  600

seq1  AATTGGAATTCTTACTTTGTTGCTTTTTCTCCATCTCTTTTAGAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAATTCTTACTTTGTTGCTTTTTCTCCATCTCTTTTAGAAATAAA  650

seq1  ACAAAACACTTTATTCATTCTTTGTGAGTTTCACATCATGCACCTCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACTTTATTCATTCTTTGTGAGTTTCACATCATGCACCTCAGTC  700

seq1  CTATTCATCTTTCCATCCCCTCTTATCCATTCTTTGCCCTTGCAACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATCTTTCCATCCCCTCTTATCCATTCTTTGCCCTTGCAACTTCC  750

seq1  ATCCCCAACCAAATAAAACACACACACACACACACACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAACCAAATAAAACACACACACACACACACACACACACACACACA  800

seq1  CACACACACACAGCAAAGAAACAAACAATGAACAAAACAAAATAAAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGCAAAGAAACAAACAATGAACAAAACAAAATAAAGCAT  850

seq1  AGAAAGCGTCCTGCCCTAGAAGCTACAGAATATCACATTGTGTCCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCGTCCTGCCCTAGAAGCTACAGAATATCACATTGTGTCCTACAG  900

seq1  TATATCCTTCTGTCCATATAGCTTCACTTGGAAATGTTCATTGCAATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTTCTGTCCATATAGCTTCACTTGGAAATGTTCATTGCAATGAG  950

seq1  TCATTTGTCTGG-CTTGAGGTAGCTGGTTTCTGTGACACCATCAATATTG  999
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TCATTTGTCTGGCCTTGA-GTAGCTGGTTTCTGTGACACCATCAATATTG  999

seq1  GATCCACACCAGAACTCCACCTGGTTTATCCTGTTG-TTTCCTTCTGTCA  1048
      |||||||||||||||||||||| ||||||||||||| |||| ||||||||
seq2  GATCCACACCAGAACTCCACCTTGTTTATCCTGTTGTTTTCTTTCTGTCA  1049

seq1  GGGCGGTCCTGC-AGCTTC-AGATCAGCACTAGCTG-CCCTTTC-ATATG  1094
       ||||||||||| |||||| |||||||||||||||| ||||||| |||||
seq2  -GGCGGTCCTGCAAGCTTCAAGATCAGCACTAGCTGCCCCTTTCAATATG  1098

seq1  CCCCAACAGTTCACAGA--TGAGCT-AGGTGTTGGAGTGG  1131
      |||| ||||||||||||   ||||| ||||| ||||||||
seq2  CCCC-ACAGTTCACAGAATGGAGCTAAGGTG-TGGAGTGG  1136


seq1: chr1_98789849_98791004
seq2: B6Ng01-208I03.g_67_1222 (reverse)

seq1  CCTCAAAAAGTAGGCTATTTATGACCATTCCTTTGATGTTTAATAA-GTT  49
      |||| | ||||||||||||   ||| ||| | |||||||||| ||| |||
seq2  CCTC-ACAAGTAGGCTATTATGGACAATTTCCTTGATGTTTATTAAGGTT  49

seq1  TTCC-AAAGATAATATAACAGCAACTCCACTTTTTTTTTTTTTGAGACA-  97
      |||| ||||||||   ||||||| |||||| |||||||||||||||||| 
seq2  TTCCAAAAGATAAATAAACAGCAGCTCCACCTTTTTTTTTTTTGAGACAG  99

seq1  GTTCTACTTTGCAGAACAAATATTCTGGCACTAGGTA-TATAAGGTAGAC  146
      ||||||| ||||||||| ||||||||||||||||||| | ||||||||||
seq2  GTTCTAC-TTGCAGAAC-AATATTCTGGCACTAGGTATTTTAAGGTAGAC  147

seq1  TAGCCTCAATGGTCTAGGATCTGCCACTCCCAGGAGTTGGGGTGACAGAC  196
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAG-CTCAAT-GTCTAGGATCTGCCACTCCCAGGAGTTGGGGTGACAGAC  195

seq1  ATA-TATCAAAACTATAGTATAGGAACACTTTAAATTTTGCCCCAGGACT  245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCAAAACTATAGTATAGGAACACTTTAAATTTTGCCCCAGGACT  245

seq1  CTATACATCTCAGATACATTTCTGCTGTTCAACGTCCATGGCTAAGATTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATCTCAGATACATTTCTGCTGTTCAACGTCCATGGCTAAGATTA  295

seq1  TTTTTAAAGTTTATTTACTTTTTATTTATTTATGTGTCTTTTGGGGGTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTTTATTTACTTTTTATTTATTTATGTGTCTTTTGGGGGTGT  345

seq1  GTGTCGAGGTTTGCCTGTGTAGCCCTGGCTGTCCTGGAACTAGCTTTGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGAGGTTTGCCTGTGTAGCCCTGGCTGTCCTGGAACTAGCTTTGTA  395

seq1  GCAGGAGCTCTGTAGAAGAAGGCCTTGAACTCGGTGTGTTTAAAGGCATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCTCTGTAGAAGAAGGCCTTGAACTCGGTGTGTTTAAAGGCATG  445

seq1  CACCACCATGCCCAGCTCAAGGCTAAGATTGCTGACATTAATTTATTGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATGCCCAGCTCAAGGCTAAGATTGCTGACATTAATTTATTGTT  495

seq1  TATTTCTTCCATTTCTTCTACCAATCTACAATTCTGTCATTCATGCCATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCCATTTCTTCTACCAATCTACAATTCTGTCATTCATGCCATT  545

seq1  AGAGTTATTGAGCCTGGGATCTGACCACTGTTCTCACTGTACAGCTATTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTGAGCCTGGGATCTGACCACTGTTCTCACTGTACAGCTATTG  595

seq1  TTCAGAGTCATCTCTTTCGGTACAGCCTGATCCCTAAAACCTCCTGACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCATCTCTTTCGGTACAGCCTGATCCCTAAAACCTCCTGACTG  645

seq1  ATGTCACTGTCCTTGCTTTAATTTATTCTGTGACAGTGAAGGGCCTAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTGTCCTTGCTTTAATTTATTCTGTGACAGTGAAGGGCCTAAAG  695

seq1  GACTGGGCAGCTTTGGTGGCACATACCAGCACTAAGCAGGCTGGAGCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCAGCTTTGGTGGCACATACCAGCACTAAGCAGGCTGGAGCAGG  745

seq1  ATGATCTGATTTCCTTCCATATTTCAGCTGTTTGAAAGTTTCACACTGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGATTTCCTTCCATATTTCAGCTGTTTGAAAGTTTCACACTGAA  795

seq1  GAAACTGACACTCCTCTCTCAACAGCATCAATTACCAGAAGTCCCTGAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGACACTCCTCTCTCAACAGCATCAATTACCAGAAGTCCCTGAGG  845

seq1  GAAGTCAAGGTCTTCTTGGGTTCTTCTTTTATGTGTGATTACATGCTGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGGTCTTCTTGGGTTCTTCTTTTATGTGTGATTACATGCTGAT  895

seq1  AGGCCCAGTTTCATGCAGGTTTTGTGCAAACAGCCATGGCTACAGAGAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTTTCATGCAGGTTTTGTGCAAACAGCCATGGCTACAGAGAGT  945

seq1  TTATTAGTGTTGTCCACATGTCATGTCCAGACTCTTGCTGTGCTTCTCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGTTGTCCACATGTCATGTCCAGACTCTTGCTGTGCTTCTCAC  995

seq1  CCTTACCTCTTACATTATTTACACCCCCAGTTTTCCATGCTGTTCTCTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTCTTACATTATTTACACCCCCAGTTTTCCATGCTGTTCTCTGA  1045

seq1  GCCTTGGAGGGGTATCACAGCTGTCTCAGTTGGCACTGAGCACCCTCCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGGGGTATCACAGCTGTCTCAGTTGGCACTGAGCACCCTCCAT  1095

seq1  CGATTTCTCAGGGTACTTTGGCTAGTTGCTTTGAAATCAATCTGGACCAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCTCAGGGTACTTTGGCTAGTTGCTTTGAAATCAATCTGGACCAC  1145

seq1  ACAGTGAATTC  1156
      |||||||||||
seq2  ACAGTGAATTC  1156


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