BAC Information

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BAC

Clone NameB6Ng01-208M03
Chromosome1 (Build37)
Map Location 56,353,034 - 56,475,035
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M03.bB6Ng01-208M03.g
ACCGA027551GA027552
length6701,119
definitionB6Ng01-208M03.b B6Ng01-208M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,474,366 - 56,475,035)(56,353,034 - 56,354,163)
sequence
gaattctttatttagctctgtaccccaatcttatattgagttctttgtat
attttggatattagccctctatttgatgtagggttggtaaatatcttttc
ccaatctgtaggtcgaatggctggggtttttttttcccatttttattagg
tatttagctcatttacatttccaatgctataccaaaagtcccctataccc
acccccccaccccctacccacccactccccctttttggccctggctttcc
cctgtactggggcatataaagtttgcaagtccaatgggcctctctttgca
gtgatggccgactaggccatcttttgatacatatgcagctagaggaatgg
ctggtttttaaagagcacagttaactgttcaacttcttaaataatttaca
tacaaatgatgctgatgatttcaaggcttgaaatggtgaatatgctggtt
aatgagtgagccttccttaatcatagctatatcacattttataactgaca
tcacttaaatctattccacctttgtggaatatatcttgatccaatattgt
tcccaagtaccaaggcattgatatctaatgaaatgtttatgctgtatggg
taaacttaaggtgttttgttagtttttgtactttttttttaggggggagg
aggatcattgttatggtttg
gaattccacatatgcaggtggcattgcaagagacaagcaggacactgtag
tcagaaggccatggtcaaggacattggggcaggggaaactgatttctgag
gctgaagaagttcagagtgtagataaggaagttgaacatttagagaaaat
atgcaaaaagcttaaataaccacagtccaggtgcaccacatatctacggt
ggaggtggacatggagtatcagctcaggagactcctggaaaaagaaatgg
agcctgggtttcatactggagaagacaggaagtgactgaaacacctgaag
cacaaaccaccacgaccaaactcaattttagaaaaaatccgttccagcta
tttgtagaaatgggaaaaaaaagaccaagttccttctctcttcttgccca
tctcagcaagtgatgaaattagcccactaggtatgaacatcccaagcctg
ggtaccatcttttgttctccttgttatcttcctttcaatatcccaaacac
atcctgaatctcgttgcttttatccacgtgccattgacagaggctgtctc
gtgtgtggattgtggtgtgcagcttcaatctctcctccctgagtctggct
tcactcaattgtaatccagtctccctaggatgccaagagtgagcgagcct
attaaaaactaaatgatataatgcctcttcctctctgaaggcttccagca
tcttccttttgctcttgaataaaactcagaacctttttaatgcctacaaa
gccataggacctgctgccagaccagctagccatccagtctgagtgacatt
ctcacctctgtggcacaccactcatgtactgtgcctcctgctctccctta
tgtctggatgccactcttctctgcacttcacatggcttgctcctttttat
ctttttctttcagctaaatgttacaaactcacaactgcctttctaaaatg
tatttttccccttcatatgccagtcagtagacatcactctcgtgcccttg
tactgctcaaacaccctgaaatttacatgtccactgttttcttttattag
tattttgttcctcagcattgatcaagggctcgagaattctgatccttttc
cagtctgtaggaatacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56474366_56475035
seq2: B6Ng01-208M03.b_45_714 (reverse)

seq1  CAAACCATAACAATGATCCTCCTCCCCCCTAAAAAAAAAGTACAAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATAACAATGATCCTCCTCCCCCCTAAAAAAAAAGTACAAAAACT  50

seq1  AACAAAACACCTTAAGTTTACCCATACAGCATAAACATTTCATTAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACACCTTAAGTTTACCCATACAGCATAAACATTTCATTAGATAT  100

seq1  CAATGCCTTGGTACTTGGGAACAATATTGGATCAAGATATATTCCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTTGGTACTTGGGAACAATATTGGATCAAGATATATTCCACAAA  150

seq1  GGTGGAATAGATTTAAGTGATGTCAGTTATAAAATGTGATATAGCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATAGATTTAAGTGATGTCAGTTATAAAATGTGATATAGCTATGA  200

seq1  TTAAGGAAGGCTCACTCATTAACCAGCATATTCACCATTTCAAGCCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAGGCTCACTCATTAACCAGCATATTCACCATTTCAAGCCTTGA  250

seq1  AATCATCAGCATCATTTGTATGTAAATTATTTAAGAAGTTGAACAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAGCATCATTTGTATGTAAATTATTTAAGAAGTTGAACAGTTAA  300

seq1  CTGTGCTCTTTAAAAACCAGCCATTCCTCTAGCTGCATATGTATCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTTTAAAAACCAGCCATTCCTCTAGCTGCATATGTATCAAAAG  350

seq1  ATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAAC  400

seq1  TTTATATGCCCCAGTACAGGGGAAAGCCAGGGCCAAAAAGGGGGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAAAGCCAGGGCCAAAAAGGGGGAGTGGG  450

seq1  TGGGTAGGGGGTGGGGGGGTGGGTATAGGGGACTTTTGGTATAGCATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGGGGTGGGGGGGTGGGTATAGGGGACTTTTGGTATAGCATTGG  500

seq1  AAATGTAAATGAGCTAAATACCTAATAAAAATGGGAAAAAAAAACCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATGAGCTAAATACCTAATAAAAATGGGAAAAAAAAACCCCAG  550

seq1  CCATTCGACCTACAGATTGGGAAAAGATATTTACCAACCCTACATCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGACCTACAGATTGGGAAAAGATATTTACCAACCCTACATCAAAT  600

seq1  AGAGGGCTAATATCCAAAATATACAAAGAACTCAATATAAGATTGGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTAATATCCAAAATATACAAAGAACTCAATATAAGATTGGGGTA  650

seq1  CAGAGCTAAATAAAGAATTC  670
      ||||||||||||||||||||
seq2  CAGAGCTAAATAAAGAATTC  670

seq1: chr1_56353034_56354163
seq2: B6Ng01-208M03.g_66_1184

seq1  GAATTCCACATATGCAGGTGGCATTGCAAGAGACAAGCAGGACACTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATATGCAGGTGGCATTGCAAGAGACAAGCAGGACACTGTAG  50

seq1  TCAGAAGGCCATGGTCAAGGACATTGGGGCAGGGGAAACTGATTTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCCATGGTCAAGGACATTGGGGCAGGGGAAACTGATTTCTGAG  100

seq1  GCTGAAGAAGTTCAGAGTGTAGATAAGGAAGTTGAACATTTAGAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAAGTTCAGAGTGTAGATAAGGAAGTTGAACATTTAGAGAAAAT  150

seq1  ATGCAAAAAGCTTAAATAACCACAGTCCAGGTGCACCACATATCTACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAAGCTTAAATAACCACAGTCCAGGTGCACCACATATCTACGGT  200

seq1  GGAGGTGGACATGGAGTATCAGCTCAGGAGACTCCTGGAAAAAGAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGACATGGAGTATCAGCTCAGGAGACTCCTGGAAAAAGAAATGG  250

seq1  AGCCTGGGTTTCATACTGGAGAAGACAGGAAGTGACTGAAACACCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGTTTCATACTGGAGAAGACAGGAAGTGACTGAAACACCTGAAG  300

seq1  CACAAACCACCACGACCAAACTCAATTTTAGAAAAAATCCGTTCCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCACCACGACCAAACTCAATTTTAGAAAAAATCCGTTCCAGCTA  350

seq1  TTTGTAGAAATGGGAAAAAAAAGACCAAGTTCCTTCTCTCTTCTTGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAAATGGGAAAAAAAAGACCAAGTTCCTTCTCTCTTCTTGCCCA  400

seq1  TCTCAGCAAGTGATGAAATTAGCCCACTAGGTATGAACATCCCAAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAAGTGATGAAATTAGCCCACTAGGTATGAACATCCCAAGCCTG  450

seq1  GGTACCATCTTTTGTTCTCCTTGTTATCTTCCTTTCAATATCCCAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATCTTTTGTTCTCCTTGTTATCTTCCTTTCAATATCCCAAACAC  500

seq1  ATCCTGAATCTCGTTGCTTTTATCCACGTGCCATTGACAGAGGCTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATCTCGTTGCTTTTATCCACGTGCCATTGACAGAGGCTGTCTC  550

seq1  GTGTGTGGATTGTGGTGTGCAGCTTCAATCTCTCCTCCCTGAGTCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGATTGTGGTGTGCAGCTTCAATCTCTCCTCCCTGAGTCTGGCT  600

seq1  TCACTCAATTGTAATCCAGTCTCCCTAGGATGCCAAGAGTGAGCGAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATTGTAATCCAGTCTCCCTAGGATGCCAAGAGTGAGCGAGCCT  650

seq1  ATTAAAAACTAAATGATATAATGCCTCTTCCTCTCTGAAGGCTTCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTAAATGATATAATGCCTCTTCCTCTCTGAAGGCTTCCAGCA  700

seq1  TCTTCCTTTTGCTCTTGAATAAAACTCAGAACCTTTTTAATGCCTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTTGCTCTTGAATAAAACTCAGAACCTTTTTAATGCCTACAAA  750

seq1  GCCATAGGACCTGCTGCCAGACCAGCTAGCCATCCAGTCTGAGTGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGACCTGCTGCCAGACCAGCTAGCCATCCAGTCTGAGTGACATT  800

seq1  CTCACCTCTGTGGCACACCACTCATGTACTGTGCCTCCTGCTCTCCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTGTGGCACACCACTCATGTACTGTGCCTCCTGCTCTCCCTTA  850

seq1  TGTCTGGATGCCACTCTTCTCTGCACTTCACATGGCTTGCTCCTTTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATGCCACTCTTCTCTGCACTTCACATGGCTTGCTCCTTTTTAT  900

seq1  CTTTTTCTTTCAGCTAAATGTTACAAACTCACAACTGCCTTTCTAAAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTTCTTTCAGCTAAATGTTACAAACTCACAACTGCCTTTCT-AAAAT  949

seq1  GTATTTTTCCCCTTCATAATGCCAGTCAGTAAGACATCACTCTCGTGCCC  1000
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  GTATTTTTCCCCTTCAT-ATGCCAGTCAGT-AGACATCACTCTCGTGCCC  997

seq1  TTGTACTGCTCAAAACACCCTGAAATTTACATGTCCACTTGTTTTC-TTT  1049
      ||||||||||| |||||||||||||||||||||||||| ||||||| |||
seq2  TTGTACTGCTC-AAACACCCTGAAATTTACATGTCCAC-TGTTTTCTTTT  1045

seq1  ATTAGTA-TTTGTTCCTCAGCATTTGGATTCCAGGGCTTCGAGAAATCTG  1098
      ||||||| ||||||||||||||||  || || ||||| ||||||| ||||
seq2  ATTAGTATTTTGTTCCTCAGCATT--GA-TCAAGGGC-TCGAGAATTCTG  1091

seq1  ATCCTTTTTCCCAGTTCTGTAGGAAATACCCC  1130
      ||||||||  |||| |||||||| ||||||||
seq2  ATCCTTTT--CCAG-TCTGTAGG-AATACCCC  1119