BAC Information

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BAC

Clone NameB6Ng01-212G06
Chromosome1 (Build37)
Map Location 132,707,786 - 132,860,814
singlet/doubletdoublet
Overlap geneFcamr, Pigr, Faim3, Il24, Il20, Il19
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860
Downstream geneIl10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212G06.bB6Ng01-212G06.g
ACCGA030198GA030199
length1,1141,009
definitionB6Ng01-212G06.b B6Ng01-212G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,707,786 - 132,708,890)(132,860,226 - 132,860,814)
sequence
gaattcagcttccactcagacctttgggcaaagcctcctccctcagtggc
tgtgctctcttcagttctacaggccaccttcccagctgcattttctgaca
agtggagtcggtaattaactctccaacagtgactctcctgtacttgctgt
ctctgcctgcaggtacaaatgcattgagaggcccgcgactggtgactggg
aacactgggggagctgtcaccatccattgccattacgccccctcctcagt
caacaggcatcaaagaaaatactggtgccgcctggggtctccattgtgga
tctgtcacactgtcgtgtccaccaaccaatacactcaccctgactaccgt
gggcgcgcggctctcactgacattccacagagcggtttgtttgtggtgag
gctgctccgactgtccctgggtgacgtgggactttaccgctgtggcatag
gagaccgaaacgacatgctattcttcagcgtgaatctgactgtgtctgca
ggtatgtgcagatggatggctaaagggccaatttttgtaaagccaatgtc
caaaagaaatgattacaaaagaaggatcaaaagcccaagaaagttttaac
ccttaggcaacaaaagggggtgagtgagggaggtaggagaaagactccag
gaggaaaacttttgatttagatagaagtcatcttcaagaaggcagatagc
aggggaaagcgcccaacaaaatacacacagggtctcctgcctggcccttt
ctaccctcagtgttgcagagtgaatgtttgagctaagtttcaaaaatgct
gtgacctagacaatatttctctggttccagagggcttcacgggaggacag
aaggtctggggctagacttttctatggtagccccttgctgagtcccccca
ccaaccccctgcagacatctgacacctccaaagctcttcttcttagatgg
ctggaatccagcctcttgggttgaaggtgttaaggccacgtcatgcgccc
attaagcctgctccttgcagaatacctagtcagagttcatcttttctggc
agcatataaatcccattgaaatgcctgcagtctgatgccatccagccagc
tctttgccttgctg
gaattctctccgaagctttcctcactggaagctcctccagcctactgtag
tcactccccactcggtggctttgaccttggctccttagctgcccactgtg
cctggccagccagggcctggctgttatccaccaccgactcaggagcagca
tcgaccatggaagagacccagcagcgtgtcttgatccaactacccctccc
ctttgcatagcacaactctttggctgctctagccaggccagagccctgca
aatctccatggacagaatctggtacacagacaggcagttaatattaattg
ataggatttatactcacccaggaaacctacttgtagcagtgctgtgaaga
cactctcagaggtttgactgaaggagggacacacacccgaatgtggcgag
atcccatggctgaggtcccattctggaggaaaatgagagagtgagtcact
cactagtgtccatctctcttcggttccttactacagaaggacttgcactg
ggaacactgtctcgcactcctgctatgtctgcaactgaggggaaccttga
actcctgatcctcctgccccctccccccctttttgagcactgagattatg
cgcatgaaccaccatacctgttttatgtagttctagagattgaactcatg
caagcaccccactaactgagctacattccagtccctaaatgatttcccaa
gctcatagttacttactggtgtatgtaagggatttaggctatctgtctta
ccccacagtccaaaggttaggcaagtctcagtgactaggtcaaagttctt
atctgctttacttcaggtgccttctttttcatattcagtcgagagtcttg
tgtttatccatcttaaatttcaacttgttggaataaacttattccagatt
gtaaaacatttaggaccctcatctgacattccctgtccttactcttcgtt
ccaaatgtcacatctttctcaagcttgctaagtgttgcccttctgaaact
tcgttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132707786_132708890
seq2: B6Ng01-212G06.b_47_1160

seq1  GAATTCAGCTTCCACTCAGACCTTTGGGCAAAGCCTCCTCCCTCAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCCACTCAGACCTTTGGGCAAAGCCTCCTCCCTCAGTGGC  50

seq1  TGTGCTCTCTTCAGTTCTACAGGCCACCTTCCCAGCTGCATTTTCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTCTTCAGTTCTACAGGCCACCTTCCCAGCTGCATTTTCTGACA  100

seq1  AGTGGAGTCGGTAATTAACTCTCCAACAGTGACTCTCCTGTACTTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTCGGTAATTAACTCTCCAACAGTGACTCTCCTGTACTTGCTGT  150

seq1  CTCTGCCTGCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGG  200

seq1  AACACTGGGGGAGCTGTCACCATCCATTGCCATTACGCCCCCTCCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGGGAGCTGTCACCATCCATTGCCATTACGCCCCCTCCTCAGT  250

seq1  CAACAGGCATCAAAGAAAATACTGGTGCCGCCTGGGGTCTCCATTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCATCAAAGAAAATACTGGTGCCGCCTGGGGTCTCCATTGTGGA  300

seq1  TCTGTCACACTGTCGTGTCCACCAACCAATACACTCACCCTGACTACCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACACTGTCGTGTCCACCAACCAATACACTCACCCTGACTACCGT  350

seq1  GGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAG  400

seq1  GCTGCTCCGACTGTCCCTGGGTGACGTGGGACTTTACCGCTGTGGCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCGACTGTCCCTGGGTGACGTGGGACTTTACCGCTGTGGCATAG  450

seq1  GAGACCGAAACGACATGCTATTCTTCAGCGTGAATCTGACTGTGTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCGAAACGACATGCTATTCTTCAGCGTGAATCTGACTGTGTCTGCA  500

seq1  GGTATGTGCAGATGGATGGCTAAAGGGCCAATTTTTGTAAAGCCAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGCAGATGGATGGCTAAAGGGCCAATTTTTGTAAAGCCAATGTC  550

seq1  CAAAAGAAATGATTACAAAAGAAGGATCAAAAGCCCAAGAAAGTTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAATGATTACAAAAGAAGGATCAAAAGCCCAAGAAAGTTTTAAC  600

seq1  CCTTAGGCAACAAAAGGGGGTGAGTGAGGGAGGTAGGAGAAAGACTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCAACAAAAGGGGGTGAGTGAGGGAGGTAGGAGAAAGACTCCAG  650

seq1  GAGGAAAACTTTTGATTTAGATAGAAGTCATCTTCAAGAAGGCAGATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACTTTTGATTTAGATAGAAGTCATCTTCAAGAAGGCAGATAGC  700

seq1  AGGGGAAAGCGCCCAACAAAATACACACAGGGTCTCCTGCCTGGCCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGCGCCCAACAAAATACACACAGGGTCTCCTGCCTGGCCCTTT  750

seq1  CTACCCTCAGTGTTGCAGAGTGAATGTTTGAGCTAAGTTTCAAAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCAGTGTTGCAGAGTGAATGTTTGAGCTAAGTTTCAAAAATGCT  800

seq1  GTGACCTAGACAATATTTCTCTGGTTCCAGAGGGCTTCACGGGAGGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAGACAATATTTCTCTGGTTCCAGAGGGCTTCACGGGAGGACAG  850

seq1  AAGGTCTGGGGCTAGACTTTTCTATGGTAGCCCCTTGCTGAGTCCCCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGGGGCTAGACTTTTCTATGGTAGCCCCTTGCTGAGTCCCCCCA  900

seq1  CCAACCCCCTGCAGACATCTGACACCTCCAAAGCTC-TCTTC-TAGA-GG  947
      |||||||||||||||||||||||||||||||||||| ||||| |||| ||
seq2  CCAACCCCCTGCAGACATCTGACACCTCCAAAGCTCTTCTTCTTAGATGG  950

seq1  CTGG-ATCCAGCCTCTTGGG-TGGAGGTG-TAAGGGCAGGGTATGCG-CC  993
      |||| ||||||||||||||| || ||||| ||||| || |  ||||| ||
seq2  CTGGAATCCAGCCTCTTGGGTTGAAGGTGTTAAGGCCACGTCATGCGCCC  1000

seq1  ATAAAGCCTGCTC--TGCAGAATACCTAGTCAGAGTCCATC-TTTCTGGC  1040
      || ||||||||||  ||||||||||||||||||||| |||| ||||||||
seq2  ATTAAGCCTGCTCCTTGCAGAATACCTAGTCAGAGTTCATCTTTTCTGGC  1050

seq1  GAGCATATAAATCCCTTTG-AATG-CTGCAGTCTGATGCAAT-CAG-CAG  1086
       |||||||||||||| ||| |||| |||||||||||||| || ||| |||
seq2  -AGCATATAAATCCCATTGAAATGCCTGCAGTCTGATGCCATCCAGCCAG  1099

seq1  CTTCTTTGCCCTTTTGCTG  1105
      | ||||||||   ||||||
seq2  C-TCTTTGCC---TTGCTG  1114

seq1: chr1_132860226_132860814
seq2: B6Ng01-212G06.g_68_656 (reverse)

seq1  TGCTCAAAAAGGGGGGGAGGGGGCAGGAGGATCAGGAGTTCAAGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAAAGGGGGGGAGGGGGCAGGAGGATCAGGAGTTCAAGGTTCCC  50

seq1  CTCAGTTGCAGACATAGCAGGAGTGCGAGACAGTGTTCCCAGTGCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGCAGACATAGCAGGAGTGCGAGACAGTGTTCCCAGTGCAAGTC  100

seq1  CTTCTGTAGTAAGGAACCGAAGAGAGATGGACACTAGTGAGTGACTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAGTAAGGAACCGAAGAGAGATGGACACTAGTGAGTGACTCACT  150

seq1  CTCTCATTTTCCTCCAGAATGGGACCTCAGCCATGGGATCTCGCCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTTTCCTCCAGAATGGGACCTCAGCCATGGGATCTCGCCACATT  200

seq1  CGGGTGTGTGTCCCTCCTTCAGTCAAACCTCTGAGAGTGTCTTCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGTGTCCCTCCTTCAGTCAAACCTCTGAGAGTGTCTTCACAGCA  250

seq1  CTGCTACAAGTAGGTTTCCTGGGTGAGTATAAATCCTATCAATTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACAAGTAGGTTTCCTGGGTGAGTATAAATCCTATCAATTAATATT  300

seq1  AACTGCCTGTCTGTGTACCAGATTCTGTCCATGGAGATTTGCAGGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTGTCTGTGTACCAGATTCTGTCCATGGAGATTTGCAGGGCTCT  350

seq1  GGCCTGGCTAGAGCAGCCAAAGAGTTGTGCTATGCAAAGGGGAGGGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTAGAGCAGCCAAAGAGTTGTGCTATGCAAAGGGGAGGGGTAG  400

seq1  TTGGATCAAGACACGCTGCTGGGTCTCTTCCATGGTCGATGCTGCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAAGACACGCTGCTGGGTCTCTTCCATGGTCGATGCTGCTCCTG  450

seq1  AGTCGGTGGTGGATAACAGCCAGGCCCTGGCTGGCCAGGCACAGTGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTGGTGGATAACAGCCAGGCCCTGGCTGGCCAGGCACAGTGGGCA  500

seq1  GCTAAGGAGCCAAGGTCAAAGCCACCGAGTGGGGAGTGACTACAGTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGAGCCAAGGTCAAAGCCACCGAGTGGGGAGTGACTACAGTAGGC  550

seq1  TGGAGGAGCTTCCAGTGAGGAAAGCTTCGGAGAGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGCTTCCAGTGAGGAAAGCTTCGGAGAGAATTC  589