BAC Information

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BAC

Clone NameB6Ng01-212K09
Chromosome1 (Build37)
Map Location 94,077,046 - 94,224,361
singlet/doubletdoublet
Overlap genenone
Upstream geneRamp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212K09.bB6Ng01-212K09.g
ACCGA030392GA030393
length1,2761,189
definitionB6Ng01-212K09.b B6Ng01-212K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,077,046 - 94,078,325)(94,223,159 - 94,224,361)
sequence
gaattcagccgcccttccattggtccgagagtcctaagtccgccccacaa
tagcccaacagccagccccgcttcgcgggcgctgcgaaggggctccgcct
tcgtccgcccttctcaaaagttccaaaccccattggctcccagcattgtc
aattctaatgagcggggcgtaccgaagactctccaggcgcccgctctgag
agcttttgctgttttagaaagagcagggagctggtgcgcgaactgattga
agccgtggacagacctccttggcagcccgcggcgctgcccgggtcaatac
agtgtgcctgagcgcctgtctcatgctctaagggggcgcggaagagcaca
gactaaggcgagggcccggccgggcctggcggcaacctccatcttaggca
aggcacagatcacgtgggctgcgtgcgggggacgccgagcccagagggag
tgcgcaggcgcggcgggccccgccctgccccggggcaggcgcgccgcttg
ggggtgcggctgtgactgtggggccttgcgtggccgtgggaactgggggt
tctgggaccgctgctgttgcggaggtgtattcttggttcgccgccacggc
gtcccggtttgttgggaccaccccttctctgaggttcttctagacctggg
ccaagcgcctataattggcgttcacgaatgtggatgggcgtgaaaggcca
tccttctggctcccttgggtccatttcctttcatcaggagagtagtgcaa
tttctcatcctgtgtccatgatatttccagaatcccacatccaaaacgaa
gacaagagcatctggtccaccctacatggcctgacctaggatgctgacct
atttactaggccttgcctgataggagttgagtagagatttaatagcattt
ttgttccatgactgggggaaaattgaaggtaaacaattcgcagaagcaat
agattcttttcattatctcaaggtatactgagttagaagcttcattcact
ggagaaattcatactctaggatagctcagctgtgaagccaagggatgaat
tgtggatagaaaagagcagaagaaatgaccgcacttaaggagtgctagtg
ccgcctgccttatgaaaagtcacctaccaaattttctacaaaatatgggc
ggaatctgcacgcctggctaacattagatggaactgaaagttcagaagta
ctttgaagataagactgcatatatcacagacttggtgagatactgagtaa
ggacaccctcataaacaaaagtgcca
gaattcagaaagttactgctatgacaattccacactgaggacagtcctta
aacccagaactttatatccagctaaactgacatttacaggcaagggagaa
aggaaggcatcttcagatgtttgacctcagaaacttggtcacataaaaga
ttccttcatagaaaaagccattgattaaataatccattaaagcaaaactc
tgtgcccaataattttgcgtcaaattctgagtgatttttacatgctgtgg
gaaagaggtttggattggaaagaaagggccagaagacttgtgggagataa
ggcaagtaactccactcgagcagcagaccaggagggatgaagctctgtgg
ccactcatgcctggggaaagactggggtgagtacaccagagacagacgag
gcccaacatgttgctggatcccagtggcatagttgggaaatactagaagc
taaaatatgggcaagggaaaatggtactaccaccctgggagaaggcgtgt
gtgaagatggggactcaaggtgaatcccgttagagggatgggagagagat
gaaacaggtcctgcatcccaggagaaccagccccactgtctccacagacg
cctcgatctgaagacatctgtgcacaaaaattcctggatgctgaatatat
ccttacgtatgctcggagccttttgtacagttccggctttccactaacgg
gcgaactctgcaataagttcatttatcaccagcatgagaatcctttggta
aactatcagttctgttgtgcctgaaatagttgcattttaaaagttggctc
tgatttgacttgtatacacccgataaataaaactaattccattctgtgtg
acaaactgagttaatttgttaggtaaataattgaacaagtatttcatgtg
aaatcacccactactcccattctgaggcagccctggaaaagggagtggga
tcgaagctgcatagttattagttgtttcatcaaaggtctccagaatgaat
cagttcagatgaagcaaatggaccttcatcagaaagacacggagggaatg
tgcagcagtaacaaaggccaggcagcaagcctctggattgctcccactgg
accagtagtacatcgttcttggacagagttccatctggaggagcaacgtt
ccagtaacgacctgcacaagtctgggcacagaacactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94077046_94078325
seq2: B6Ng01-212K09.b_44_1319

seq1  GAATTCAGCCGCCCTTCCATTGGTCCGAGAGTCCTAAGTCCGCCCCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCGCCCTTCCATTGGTCCGAGAGTCCTAAGTCCGCCCCACAA  50

seq1  TAGCCCAACAGCCAGCCCCGCTTCGCGGGCGCTGCGAAGGGGCTCCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAACAGCCAGCCCCGCTTCGCGGGCGCTGCGAAGGGGCTCCGCCT  100

seq1  TCGTCCGCCCTTCTCAAAAGTTCCAAACCCCATTGGCTCCCAGCATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCGCCCTTCTCAAAAGTTCCAAACCCCATTGGCTCCCAGCATTGTC  150

seq1  AATTCTAATGAGCGGGGCGTACCGAAGACTCTCCAGGCGCCCGCTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATGAGCGGGGCGTACCGAAGACTCTCCAGGCGCCCGCTCTGAG  200

seq1  AGCTTTTGCTGTTTTAGAAAGAGCAGGGAGCTGGTGCGCGAACTGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGCTGTTTTAGAAAGAGCAGGGAGCTGGTGCGCGAACTGATTGA  250

seq1  AGCCGTGGACAGACCTCCTTGGCAGCCCGCGGCGCTGCCCGGGTCAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGGACAGACCTCCTTGGCAGCCCGCGGCGCTGCCCGGGTCAATAC  300

seq1  AGTGTGCCTGAGCGCCTGTCTCATGCTCTAAGGGGGCGCGGAAGAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCTGAGCGCCTGTCTCATGCTCTAAGGGGGCGCGGAAGAGCACA  350

seq1  GACTAAGGCGAGGGCCCGGCCGGGCCTGGCGGCAACCTCCATCTTAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGCGAGGGCCCGGCCGGGCCTGGCGGCAACCTCCATCTTAGGCA  400

seq1  AGGCACAGATCACGTGGGCTGCGTGCGGGGGACGCCGAGCCCAGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGATCACGTGGGCTGCGTGCGGGGGACGCCGAGCCCAGAGGGAG  450

seq1  TGCGCAGGCGCGGCGGGCCCCGCCCTGCCCCGGGGCAGGCGCGCCGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGGCGCGGCGGGCCCCGCCCTGCCCCGGGGCAGGCGCGCCGCTTG  500

seq1  GGGGTGCGGCTGTGACTGTGGGGCCTTGCGTGGCCGTGGGAACTGGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCGGCTGTGACTGTGGGGCCTTGCGTGGCCGTGGGAACTGGGGGT  550

seq1  TCTGGGACCGCTGCTGTTGCGGAGGTGTATTCTTGGTTCGCCGCCACGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACCGCTGCTGTTGCGGAGGTGTATTCTTGGTTCGCCGCCACGGC  600

seq1  GTCCCGGTTTGTTGGGACCACCCCTTCTCTGAGGTTCTTCTAGACCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGTTTGTTGGGACCACCCCTTCTCTGAGGTTCTTCTAGACCTGGG  650

seq1  CCAAGCGCCTATAATTGGCGTTCACGAATGTGGATGGGCGTGAAAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGCCTATAATTGGCGTTCACGAATGTGGATGGGCGTGAAAGGCCA  700

seq1  TCCTTCTGGCTCCCTTGGGTCCATTTCCTTTCATCAGGAGAGTAGTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGCTCCCTTGGGTCCATTTCCTTTCATCAGGAGAGTAGTGCAA  750

seq1  TTTCTCATCCTGTGTCCATGATATTTCCAGAATCCCACATCCAAAACGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCCTGTGTCCATGATATTTCCAGAATCCCACATCCAAAACGAA  800

seq1  GACAAGAGCATCTGGTCCACCCTACATGGCCTGACCTAGGATGCTGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGCATCTGGTCCACCCTACATGGCCTGACCTAGGATGCTGACCT  850

seq1  ATTTACTAGGCCTTGCCTGATAGGAGTTGAGTAGAGATTTAATAGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAGGCCTTGCCTGATAGGAGTTGAGTAGAGATTTAATAGCATTT  900

seq1  TTGTTCCATGACTGGGGGAAAATTGAAGGTAAAACAATTCGCAAGAAGCA  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TTGTTCCATGACTGGGGGAAAATTGAAGGT-AAACAATTCGC-AGAAGCA  948

seq1  ATAGATTCTTTTCATTATCTCAAGGTAATACTGAGTTAGAAAGCTTCATT  1000
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ATAGATTCTTTTCATTATCTCAAGGT-ATACTGAGTTAG-AAGCTTCATT  996

seq1  CACTGGGAGAAATTCATACTCTAGGATAGCTCAGCTGTGAAGCCAAGGGA  1050
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACT-GGAGAAATTCATACTCTAGGATAGCTCAGCTGTGAAGCCAAGGGA  1045

seq1  TGAATTGTGGAATAGAAAAGAGCAGAAGAAAATGACCGCACTT-AGGAGT  1099
      |||||||||| ||||||||||||||||| |||||||||||||| ||||||
seq2  TGAATTGTGG-ATAGAAAAGAGCAGAAG-AAATGACCGCACTTAAGGAGT  1093

seq1  GCTAGTGCAG-CTG-CTTATAGAAAAGTACACTACCAAATTTACATACAA  1147
      |||||||| | ||| ||||| |||||||   ||||||||||| | |||||
seq2  GCTAGTGCCGCCTGCCTTAT-GAAAAGTCACCTACCAAATTTTC-TACAA  1141

seq1  AATA-ATGCAGGATCTGCA-GCCT-GCTAACATTTAGATGAAACATGAAG  1194
      ||||   || | ||||||| |||| ||||||| ||||||| |||   |||
seq2  AATATGGGCGGAATCTGCACGCCTGGCTAACA-TTAGATGGAACTGAAAG  1190

seq1  TTCAGAAGTACTTGAAAGGATAAAGACATGCAATAATCACAGATTTGGTG  1244
      |||||||||||||  || ||| ||||| ||||   |||||||| ||||||
seq2  TTCAGAAGTACTTTGAA-GAT-AAGAC-TGCATATATCACAGACTTGGTG  1237

seq1  AG-TACTGAGTAAAGACAAC--CCTAAACAAAAGTGCCA  1280
      || |||||||||| |||| |  | |||||||||||||||
seq2  AGATACTGAGTAAGGACACCCTCATAAACAAAAGTGCCA  1276

seq1: chr1_94223159_94224361
seq2: B6Ng01-212K09.g_66_1254 (reverse)

seq1  TCAGTGTTCTGTGCCCAG-CTTGTTGCAAGCTCCTGTTGCTGTGGAGACG  49
      |||||||||||||||||| |||| ||| || ||  ||| |  |||| |||
seq2  TCAGTGTTCTGTGCCCAGACTTG-TGC-AGGTC--GTTAC--TGGA-ACG  43

seq1  TGTTGGCTCCTCAGGTGGGAACTTCTGGTCTAAAGAACGAATGGTTCTTA  99
         | |||||||  |  ||||| ||||  |  ||||||| |||  |  ||
seq2  ---TTGCTCCTCCAGATGGAAC-TCTGTCC--AAGAACG-ATG--TACTA  84

seq1  CTGGTCCCGTGGGAGACATTCCAGAGGC-TGCTGCCTGG-CTTTG-TACT  146
      ||||||| ||||||| || ||||||||| |||||||||| ||||| ||||
seq2  CTGGTCCAGTGGGAG-CAATCCAGAGGCTTGCTGCCTGGCCTTTGTTACT  133

seq1  GGCTGCACATTCCCTCCGTGTCTTTCTGATGAAGGTCCATTTGCTTCCTT  196
       ||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  -GCTGCACATTCCCTCCGTGTCTTTCTGATGAAGGTCCATTTGCTT-CAT  181

seq1  CTGAACTGATTCATTCTGGAGACCCTTGATG-AACACCTAATAACTATGC  245
      |||||||||||||||||||||||| |||||| |||| |||||||||||||
seq2  CTGAACTGATTCATTCTGGAGACCTTTGATGAAACAACTAATAACTATGC  231

seq1  AGCTTCGATCCCACTCCCTTTTCCAGGGCTGCCTCAGAATGGGAGTAGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGATCCCACTCCCTTTTCCAGGGCTGCCTCAGAATGGGAGTAGTG  281

seq1  GGTGATTTCACATGAAATACTTGTTCAATTATTTACCTAACAAATTAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTCACATGAAATACTTGTTCAATTATTTACCTAACAAATTAACT  331

seq1  CAGTTTGTCACACAGAATGGAATTAGTTTTATTTATCGGGTGTATACAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTCACACAGAATGGAATTAGTTTTATTTATCGGGTGTATACAAG  381

seq1  TCAAATCAGAGCCAACTTTTAAAATGCAACTATTTCAGGCACAACAGAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGAGCCAACTTTTAAAATGCAACTATTTCAGGCACAACAGAAC  431

seq1  TGATAGTTTACCAAAGGATTCTCATGCTGGTGATAAATGAACTTATTGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTTACCAAAGGATTCTCATGCTGGTGATAAATGAACTTATTGCA  481

seq1  GAGTTCGCCCGTTAGTGGAAAGCCGGAACTGTACAAAAGGCTCCGAGCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGCCCGTTAGTGGAAAGCCGGAACTGTACAAAAGGCTCCGAGCAT  531

seq1  ACGTAAGGATATATTCAGCATCCAGGAATTTTTGTGCACAGATGTCTTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGGATATATTCAGCATCCAGGAATTTTTGTGCACAGATGTCTTCA  581

seq1  GATCGAGGCGTCTGTGGAGACAGTGGGGCTGGTTCTCCTGGGATGCAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGAGGCGTCTGTGGAGACAGTGGGGCTGGTTCTCCTGGGATGCAGGA  631

seq1  CCTGTTTCATCTCTCTCCCATCCCTCTAACGGGATTCACCTTGAGTCCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCATCTCTCTCCCATCCCTCTAACGGGATTCACCTTGAGTCCCC  681

seq1  ATCTTCACACACGCCTTCTCCCAGGGTGGTAGTACCATTTTCCCTTGCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACACACGCCTTCTCCCAGGGTGGTAGTACCATTTTCCCTTGCCC  731

seq1  ATATTTTAGCTTCTAGTATTTCCCAACTATGCCACTGGGATCCAGCAACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCTTCTAGTATTTCCCAACTATGCCACTGGGATCCAGCAACA  781

seq1  TGTTGGGCCTCGTCTGTCTCTGGTGTACTCACCCCAGTCTTTCCCCAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCCTCGTCTGTCTCTGGTGTACTCACCCCAGTCTTTCCCCAGGC  831

seq1  ATGAGTGGCCACAGAGCTTCATCCCTCCTGGTCTGCTGCTCGAGTGGAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGCCACAGAGCTTCATCCCTCCTGGTCTGCTGCTCGAGTGGAGT  881

seq1  TACTTGCCTTATCTCCCACAAGTCTTCTGGCCCTTTCTTTCCAATCCAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTTATCTCCCACAAGTCTTCTGGCCCTTTCTTTCCAATCCAAA  931

seq1  CCTCTTTCCCACAGCATGTAAAAATCACTCAGAATTTGACGCAAAATTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCCACAGCATGTAAAAATCACTCAGAATTTGACGCAAAATTAT  981

seq1  TGGGCACAGAGTTTTGCTTTAATGGATTATTTAATCAATGGCTTTTTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGAGTTTTGCTTTAATGGATTATTTAATCAATGGCTTTTTCTA  1031

seq1  TGAAGGAATCTTTTATGTGACCAAGTTTCTGAGGTCAAACATCTGAAGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATCTTTTATGTGACCAAGTTTCTGAGGTCAAACATCTGAAGAT  1081

seq1  GCCTTCCTTTCTCCCTTGCCTGTAAATGTCAGTTTAGCTGGATATAAAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTTTCTCCCTTGCCTGTAAATGTCAGTTTAGCTGGATATAAAGT  1131

seq1  TCTGGGTTTAAGGACTGTCCTCAGTGTGGAATTGTCATAGCAGTAACTTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTAAGGACTGTCCTCAGTGTGGAATTGTCATAGCAGTAACTTT  1181

seq1  CTGAATTC  1203
      ||||||||
seq2  CTGAATTC  1189