BAC Information

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BAC

Clone NameB6Ng01-213I19
Chromosome1 (Build37)
Map Location 147,571,074 - 147,679,714
singlet/doubletdoublet
Overlap genenone
Upstream geneRgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213I19.bB6Ng01-213I19.g
ACCGA031039GA031040
length1,2511,119
definitionB6Ng01-213I19.b B6Ng01-213I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,571,074 - 147,572,315)(147,678,568 - 147,679,714)
sequence
gaattcttaaatggtaagtaatttaattgttcatatacatgaaattacca
agattattttaaaataaattattgggttatttcgtttcaaatagagaaca
attgttagtattattcagaaatgcatgaaaaacaagcttcacatttatag
aaaattaaacacacctattcacacactacatcaaatacaagcggaaaata
atgtgatataaaacttgcagagggggaactatcccttgcttattagcgtt
atacttgaattttcaaacagagatggaaaaattaaatgacagtatatttg
gtttgttaaagtaaactccaaatgtgtgtttccaaatggctttgaataaa
ttacattttccacgtaatggcctaataataaatgaaatgctttttgctga
cccacttaacattcattagaggcttactaagtgtatgtgtactttctagt
tatggtgtttttatgagatgtctgggttctttcttctttcgtggtttact
tacactttacatcttcttctctcattccttccctctcttcttctcctctc
tctttttgactcccgtgttccttatttccttctcatttttgtttgtttgg
ttttaagtaaatgctctgtaggactaaagcgactctagtaataagaatgc
agcatatgttggacacaggccttataaattcaactagcaatagtatataa
ctgtaaaagtgatttctgatttcttaccattgagaaattttgaaaattaa
taactaggaaatgtaacaatgttacttcatctttcaaagaacttatgaat
tttaacctatacattagtatgttgttaaatgaggttaaagaacataagtg
tattatctgtaccttgggttaaattctaattttgcaactgtagatttgta
ggaaattcatcttaatattcattgtcacttctggattgtctttatagtgc
attctagagattactgaagaaatatttatgaaatatattcacaatattgt
atttggttctattttcagtgtttcagaaccttatgttttatgaatattca
ttcatatgtttatggatatttaccacatatgtttatgaatatctcaaaca
ttgttgttatattttggtgggatgtccctttcacatcttttgtttcatta
tatgggaccactcagttaaatcaggattcatccaggtgtaccaaaggaca
ttggaatctatgctgaaagcacggcttcttttatgcctgtgggcatataa
a

gaattcctgctaattgtgagttgccagataaaggtaatagaaactgaact
cagtcttctgtaagaacacgatacattctaaaccactatgtcttctcttc
agtgccaggttacattttttaggaagaaaaattgcttaatatttatcatg
caatacatatataaatttagcaccatggaaatattaattttaaatattca
aaattagtaagctcatattgataaaagtctaacattatagatatacacac
aagtacaagaacacatgcaacataactaattgaatatattgcaggtatga
aagtctaataaatgtgagagttactacaaaatgtttagcactttattttt
ctccttgtgtcttattgctctatctagtgtttcaagtacaacattgaaaa
gaaataggcataactgatagccttgttttgttcctgattttaataggttt
acttcaagatattctccattgagaaagatattgactgtggttctgttata
cataacctttatttttctgggttatgtgagaattgtcagtgtttgctgca
tctattgatacgactatgtaattttgtcattaagttaatttgtatgatct
attacattcattgacatacatattgaaacatccctgcatctctgggataa
aatcacattgctcatgatggatgatatttttgacatacagctttattcat
atttcaaatacttaattgaggacttttacatccatgttcatcagggctat
tggacattaattttatattttgcttagtatttacctgttttgttattaga
agtaaattgacctcacaaaattgtgggagtatttttttctgtttctattt
ttaacctgaaaccatgactgtattttagggtttcttttctaatctattgc
tctatatatctttttatgccagtatcacagcttatttagttttattgttt
ataattctttggcccttttatagtgtctttctttttattctgggtgatat
agatttgtttattttttttttttgtaattgatacatttagcagatgctgt
atccctatgcattatttttttatataaaattgttcatatatctcatcttt
ccgattcttcaatcaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_147571074_147572315
seq2: B6Ng01-213I19.b_47_1297

seq1  GAATTCTTAAATGGTAAGTAATTTAATTGTTCATATACATGAAATTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGGTAAGTAATTTAATTGTTCATATACATGAAATTACCA  50

seq1  AGATTATTTTAAAATAAATTATTGGGTTATTTCGTTTCAAATAGAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTAAAATAAATTATTGGGTTATTTCGTTTCAAATAGAGAACA  100

seq1  ATTGTTAGTATTATTCAGAAATGCATGAAAAACAAGCTTCACATTTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTATTATTCAGAAATGCATGAAAAACAAGCTTCACATTTATAG  150

seq1  AAAATTAAACACACCTATTCACACACTACATCAAATACAAGCGGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAACACACCTATTCACACACTACATCAAATACAAGCGGAAAATA  200

seq1  ATGTGATATAAAACTTGCAGAGGGGGAACTATCCCTTGCTTATTAGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATATAAAACTTGCAGAGGGGGAACTATCCCTTGCTTATTAGCGTT  250

seq1  ATACTTGAATTTTCAAACAGAGATGGAAAAATTAAATGACAGTATATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAATTTTCAAACAGAGATGGAAAAATTAAATGACAGTATATTTG  300

seq1  GTTTGTTAAAGTAAACTCCAAATGTGTGTTTCCAAATGGCTTTGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAAAGTAAACTCCAAATGTGTGTTTCCAAATGGCTTTGAATAAA  350

seq1  TTACATTTTCCACGTAATGGCCTAATAATAAATGAAATGCTTTTTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTCCACGTAATGGCCTAATAATAAATGAAATGCTTTTTGCTGA  400

seq1  CCCACTTAACATTCATTAGAGGCTTACTAAGTGTATGTGTACTTTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTAACATTCATTAGAGGCTTACTAAGTGTATGTGTACTTTCTAGT  450

seq1  TATGGTGTTTTTATGAGATGTCTGGGTTCTTTCTTCTTTCGTGGTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTTTTTATGAGATGTCTGGGTTCTTTCTTCTTTCGTGGTTTACT  500

seq1  TACACTTTACATCTTCTTCTCTCATTCCTTCCCTCTCTTCTTCTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTACATCTTCTTCTCTCATTCCTTCCCTCTCTTCTTCTCCTCTC  550

seq1  TCTTTTTGACTCCCGTGTTCCTTATTTCCTTCTCATTTTTGTTTGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGACTCCCGTGTTCCTTATTTCCTTCTCATTTTTGTTTGTTTGG  600

seq1  TTTTAAGTAAATGCTCTGTAGGACTAAAGCGACTCTAGTAATAAGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAAATGCTCTGTAGGACTAAAGCGACTCTAGTAATAAGAATGC  650

seq1  AGCATATGTTGGACACAGGCCTTATAAATTCAACTAGCAATAGTATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGTTGGACACAGGCCTTATAAATTCAACTAGCAATAGTATATAA  700

seq1  CTGTAAAAGTGATTTCTGATTTCTTACCATTGAGAAATTTTGAAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAGTGATTTCTGATTTCTTACCATTGAGAAATTTTGAAAATTAA  750

seq1  TAACTAGGAAATGTAACAATGTTACTTCATCTTTCAAAGAACTTATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGGAAATGTAACAATGTTACTTCATCTTTCAAAGAACTTATGAAT  800

seq1  TTTAACCTATACATTAGTATGTTGTTAAATGAGGTTAAAGAACATAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTATACATTAGTATGTTGTTAAATGAGGTTAAAGAACATAAGTG  850

seq1  TATTATCTGTACCTTGGGTTAAATTCTAATTTTGCAACTGTAGATTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTGTACCTTGGGTTAAATTCTAATTTTGCAACTGTAGATTTGTA  900

seq1  GGAAATTCATCTTAATATTCATTGTCACTTCTGGATTGTCTTTAATAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAAATTCATCTTAATATTCATTGTCACTTCTGGATTGTCTTT-ATAGTG  949

seq1  CATTCTAGAGATTACTGAAGAAATATTTATGAAATATATTCACAATATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAGATTACTGAAGAAATATTTATGAAATATATTCACAATATTG  999

seq1  TTATTTGGTTCTATTTTCAGTGTTTCAAGAACCTTATG-TTTATGAATA-  1048
       ||||||||||||||||||||||||| ||||||||||| |||||||||| 
seq2  -TATTTGGTTCTATTTTCAGTGTTTC-AGAACCTTATGTTTTATGAATAT  1047

seq1  TCATTCATATGTTTATGAATATTTA-CACATATGTTTATGAATATCTCAA  1097
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TCATTCATATGTTTATGGATATTTACCACATATGTTTATGAATATCTCAA  1097

seq1  ACA-TGTTG-TATATTT--GT-GGATGT-CCTTTCACAATTCTTTGTTCA  1141
      ||| ||||| |||||||  || |||||| |||||||||  | ||  ||||
seq2  ACATTGTTGTTATATTTTGGTGGGATGTCCCTTTCACATCTTTTGTTTCA  1147

seq1  T--TATGGGAACAATCAGTAAAATCAGTATCAATC--AGTGTACAAATAG  1187
      |  ||||||| || ||||| ||||||| ||  |||   |||||| || ||
seq2  TTATATGGGACCACTCAGTTAAATCAGGATTCATCCAGGTGTACCAA-AG  1196

seq1  AACA-TGGAATCTATGCTTAGAAAGCA-GGCTCTCTTTAATGGCTGTGGG  1235
       ||| |||||||||||||  ||||||| |||| ||||| ||| |||||||
seq2  GACATTGGAATCTATGCT--GAAAGCACGGCT-TCTTTTATGCCTGTGGG  1243

seq1  CAT-TAAA  1242
      ||| ||||
seq2  CATATAAA  1251


seq1: chr1_147678568_147679714
seq2: B6Ng01-213I19.g_66_1184 (reverse)

seq1  GAATTG---GAAGAATAGAAAAGATGAGATTATATGAACATATTTTAATT  47
      ||||||   ||||||| | |||||||||| |||||||||| ||||||  |
seq2  GAATTGATTGAAGAATCGGAAAGATGAGA-TATATGAACA-ATTTTA--T  46

seq1  ATAAAAAAATAATGGCATTAAGGATACAGCCAATTCTTGCTTAAAATGTA  97
      ||||||||||||| ||| || |||||||||  ||   ||||  |||||||
seq2  ATAAAAAAATAAT-GCA-TAGGGATACAGC--AT--CTGCT--AAATGTA  88

seq1  ATTCAATTTACAAAAAAAAAAAAATAAAACAAAATCTTAATAATCACCCA  147
        |||| |||| ||||||||||||||||   ||||||  || ||||||||
seq2  --TCAA-TTAC-AAAAAAAAAAAATAAA--CAAATCT--AT-ATCACCCA  129

seq1  GAATTAAAAAAGAAAAGAACACTATTAAAAGGGGCCAAAGAATTTATAAA  197
      ||||  |||||||||   |||||||  ||| ||||||||||| |||||||
seq2  GAAT--AAAAAGAAA--GACACTAT--AAAAGGGCCAAAGAA-TTATAAA  172

seq1  CAATAAAACTAAAATAAAGCTGTGATACTGGCATAAAAAGATATATAGAG  247
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  CAATAAAACTAAA--TAAGCTGTGATACTGGCATAAAAAGATATATAGAG  220

seq1  CAATAGATTAGAAAAGAAACCCTAAAATACAGTCATGGTTTTCAGGTTAA  297
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAATAGATTAGAAAAGAAACCCTAAAATACAGTCATGG-TTTCAGGTTAA  269

seq1  AAATAGAAACAGAAAAAAATACTCCCACAATTTTGTGAGGTCAATTTACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAACAGAAAAAAATACTCCCACAATTTTGTGAGGTCAATTTACT  319

seq1  TCTAATAACAAAACAGGTAAATACTAAGCAAAATATAAAATTAATGTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACAAAACAGGTAAATACTAAGCAAAATATAAAATTAATGTCCA  369

seq1  ATAGCCCTGATGAACATGGATGTAAAAGTCCTCAATTAAGTATTTGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGATGAACATGGATGTAAAAGTCCTCAATTAAGTATTTGAAAT  419

seq1  ATGAATAAAGCTGTATGTCAAAAATATCATCCATCATGAGCAATGTGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAGCTGTATGTCAAAAATATCATCCATCATGAGCAATGTGATT  469

seq1  TTATCCCAGAGATGCAGGGATGTTTCAATATGTATGTCAATGAATGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCAGAGATGCAGGGATGTTTCAATATGTATGTCAATGAATGTAAT  519

seq1  AGATCATACAAATTAACTTAATGACAAAATTACATAGTCGTATCAATAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATACAAATTAACTTAATGACAAAATTACATAGTCGTATCAATAGA  569

seq1  TGCAGCAAACACTGACAATTCTCACATAACCCAGAAAAATAAAGGTTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAACACTGACAATTCTCACATAACCCAGAAAAATAAAGGTTATG  619

seq1  TATAACAGAACCACAGTCAATATCTTTCTCAATGGAGAATATCTTGAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGAACCACAGTCAATATCTTTCTCAATGGAGAATATCTTGAAGT  669

seq1  AAACCTATTAAAATCAGGAACAAAACAAGGCTATCAGTTATGCCTATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTAAAATCAGGAACAAAACAAGGCTATCAGTTATGCCTATTTC  719

seq1  TTTTCAATGTTGTACTTGAAACACTAGATAGAGCAATAAGACACAAGGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGTTGTACTTGAAACACTAGATAGAGCAATAAGACACAAGGAG  769

seq1  AAAAATAAAGTGCTAAACATTTTGTAGTAACTCTCACATTTATTAGACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGTGCTAAACATTTTGTAGTAACTCTCACATTTATTAGACTT  819

seq1  TCATACCTGCAATATATTCAATTAGTTATGTTGCATGTGTTCTTGTACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTGCAATATATTCAATTAGTTATGTTGCATGTGTTCTTGTACTT  869

seq1  GTGTGTATATCTATAATGTTAGACTTTTATCAATATGAGCTTACTAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATATCTATAATGTTAGACTTTTATCAATATGAGCTTACTAATTT  919

seq1  TGAATATTTAAAATTAATATTTCCATGGTGCTAAATTTATATATGTATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTAAAATTAATATTTCCATGGTGCTAAATTTATATATGTATTG  969

seq1  CATGATAAATATTAAGCAATTTTTCTTCCTAAAAAATGTAACCTGGCACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAATATTAAGCAATTTTTCTTCCTAAAAAATGTAACCTGGCACT  1019

seq1  GAAGAGAAGACATAGTGGTTTAGAATGTATCGTGTTCTTACAGAAGACTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGACATAGTGGTTTAGAATGTATCGTGTTCTTACAGAAGACTG  1069

seq1  AGTTCAGTTTCTATTACCTTTATCTGGCAACTCACAATTAGCAGGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTTCTATTACCTTTATCTGGCAACTCACAATTAGCAGGAATTC  1119


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