BAC Information

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BAC

Clone NameB6Ng01-215N08
Chromosome1 (Build37)
Map Location 6,046,372 - 6,196,331
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp6v1h, EG636659, Oprk1, Npbwr1
Downstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215N08.bB6Ng01-215N08.g
ACCGA032685GA032686
length986613
definitionB6Ng01-215N08.b B6Ng01-215N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,195,377 - 6,196,331)(6,046,372 - 6,046,983)
sequence
gaattctgaagaagcaggaaccagtgccagagaagaagtggatgtcctag
caagacaagggcacagtgaaagaacaaacctttcttctttcattgttttt
atataggcttccagcagaaggtatggctcagattaaaggtgtgtcttccc
acctaacgtctggattaaaggcccgactcttcccaattcaagatccagat
cataaacctgttttatggatcaaaggtgtgttatcttcctgcctcaaaat
ctggaacacaagagtgccctcaacttctgtactttagatcatcccagata
tagtcaagttgacagccaacagtagtgatcaaatctaccccttgtcaatt
tgacacacaatcatatctccttatgtcatggataatatccaaataaaaac
aatagccaggtcatagtaatacctagacgtgtacaattgcaaatacatta
tgtatttaaccaggtcataattaccactaaaataatgtaactaccctcat
acaaccaaaaaggcaatataaatttagaataggtggcattgtcccttggg
ggacatcctattagtattctcttaattcatgctacagtgtatgacacgcc
tttaatcctagcacttgggaggcagagacaggcggatttctgagttcgag
gccagcctggtctacaaagtgagttccaggacaggccggtctacacagag
aaaccctgtcttgaaaaacaaacaaacaaaaacaaaaaacaaacaaacaa
aaaatctaaacaaaacaaacatctgtacaaatctattttaaataaaattc
aatagaagcactcgcgtcaactataatcctcatttttgcaactagtcttg
tggccttgtggtatttctaactacctttcctctactatccattcagaatt
ccttccagcctctgcaacacctcagcaggtttagccatttttccatacct
taaatactgaagggtctgtgcttctctttgtcatcc

gaattcaaataggccagaaacttggaggcaacagctgataaggaagccat
ggaggaatgctgcttctgcttctccttctgcttctgcttcccctcctcct
cctccttttttaatctagttttatttgtttgtttgtttgtttgtttgttt
gttttacttattcactttacatcctgctctctgtcctgctcccagtcact
gcctcccataaccgttccccatccccttctctgagagggtggggacccct
tgggcatccccccaccatggcagttcaagtctccaagaggctagaggctt
cctcccactgagactagataaggcagcccagttcaaagtacatatcccac
gtacaggcaacagcttttgggattgcctccctacctccaattccagttgt
tcgtgactcacattatggtcagttgtactggctggttttgtatgtcaact
tgacatgagctagagtcatcagaaaggaaagactctcagttgagaaaatg
cctccatgagatccagctgtaaggcattttctcaattattgaccaatggg
gaagggcctagcccattgtgggttgtgacatccttgggtcgatgaccctg
aatttctataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6195377_6196331
seq2: B6Ng01-215N08.b_51_1006 (reverse)

seq1  TATTTAAGGTATGG-AAAATGGCTAAAACCTGCTGAGGTGTTGCAGAGGC  49
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TATTTAAGGTATGGAAAAATGGCT-AAACCTGCTGAGGTGTTGCAGAGGC  49

seq1  TGGAAGGAATTCTGAATGGATAGTAGAGG-AAGGTAGTTAGAAATACCAC  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAAGGAATTCTGAATGGATAGTAGAGGAAAGGTAGTTAGAAATACCAC  99

seq1  AAGGCCACAAGACTAGTTGCAAAAATGAGGATTATAGTTGACGCGAGTGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACAAGACTAGTTGCAAAAATGAGGATTATAGTTGACGCGAGTGC  149

seq1  TTCTATTGAATTTTATTTAAAATAGATTTGTACAGATGTTTGTTTTGTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGAATTTTATTTAAAATAGATTTGTACAGATGTTTGTTTTGTTT  199

seq1  AGATTTTTTGTTTGTTTGTTTTTTGTTTTTGTTTGTTTGTTTTTCAAGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTGTTTGTTTGTTTTTTGTTTTTGTTTGTTTGTTTTTCAAGAC  249

seq1  AGGGTTTCTCTGTGTAGACCGGCCTGTCCTGGAACTCACTTTGTAGACCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTGTAGACCGGCCTGTCCTGGAACTCACTTTGTAGACCA  299

seq1  GGCTGGCCTCGAACTCAGAAATCCGCCTGTCTCTGCCTCCCAAGTGCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCGAACTCAGAAATCCGCCTGTCTCTGCCTCCCAAGTGCTAG  349

seq1  GATTAAAGGCGTGTCATACACTGTAGCATGAATTAAGAGAATACTAATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGTCATACACTGTAGCATGAATTAAGAGAATACTAATAG  399

seq1  GATGTCCCCCAAGGGACAATGCCACCTATTCTAAATTTATATTGCCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCCCAAGGGACAATGCCACCTATTCTAAATTTATATTGCCTTTT  449

seq1  TGGTTGTATGAGGGTAGTTACATTATTTTAGTGGTAATTATGACCTGGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATGAGGGTAGTTACATTATTTTAGTGGTAATTATGACCTGGTT  499

seq1  AAATACATAATGTATTTGCAATTGTACACGTCTAGGTATTACTATGACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAATGTATTTGCAATTGTACACGTCTAGGTATTACTATGACCT  549

seq1  GGCTATTGTTTTTATTTGGATATTATCCATGACATAAGGAGATATGATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGTTTTTATTTGGATATTATCCATGACATAAGGAGATATGATTG  599

seq1  TGTGTCAAATTGACAAGGGGTAGATTTGATCACTACTGTTGGCTGTCAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAATTGACAAGGGGTAGATTTGATCACTACTGTTGGCTGTCAAC  649

seq1  TTGACTATATCTGGGATGATCTAAAGTACAGAAGTTGAGGGCACTCTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATATCTGGGATGATCTAAAGTACAGAAGTTGAGGGCACTCTTGT  699

seq1  GTTCCAGATTTTGAGGCAGGAAGATAACACACCTTTGATCCATAAAACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGATTTTGAGGCAGGAAGATAACACACCTTTGATCCATAAAACAG  749

seq1  GTTTATGATCTGGATCTTGAATTGGGAAGAGTCGGGCCTTTAATCCAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGATCTGGATCTTGAATTGGGAAGAGTCGGGCCTTTAATCCAGAC  799

seq1  GTTAGGTGGGAAGACACACCTTTAATCTGAGCCATACCTTCTGCTGGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGGGAAGACACACCTTTAATCTGAGCCATACCTTCTGCTGGAAG  849

seq1  CCTATATAAAAACAATGAAAGAAGAAAGGTTTGTTCTTTCACTGTGCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATAAAAACAATGAAAGAAGAAAGGTTTGTTCTTTCACTGTGCCCT  899

seq1  TGTCTTGCTAGGACATCCACTTCTTCTCTGGCACTGGTTCCTGCTTCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTAGGACATCCACTTCTTCTCTGGCACTGGTTCCTGCTTCTTC  949

seq1  AGAATTC  955
      |||||||
seq2  AGAATTC  956


seq1: chr1_6046372_6046983
seq2: B6Ng01-215N08.g_66_678

seq1  GAATTCAAATAGGCCAGAAACTTGGAGGCAACAGCTGATAAGGAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGGCCAGAAACTTGGAGGCAACAGCTGATAAGGAAGCCAT  50

seq1  GGAGGAATGCTGCTTCTGCTTCTCCTTCTGCTTCTGCTTCCCCTCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATGCTGCTTCTGCTTCTCCTTCTGCTTCTGCTTCCCCTCCTCCT  100

seq1  CCTCCTTTTTTAATCTAGTTTTATTTGTTTGTTTGTTTGTTTGTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTTTAATCTAGTTTTATTTGTTTGTTTGTTTGTTTGTTTGTTT  150

seq1  GTTTTACTTATTCACTTTACATCCTGCTCTCTGTCCTGCTCCCAGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTATTCACTTTACATCCTGCTCTCTGTCCTGCTCCCAGTCACT  200

seq1  GCCTCCCATAACCGTTCCCCATCCCCTTCTCTGAGAGGGTGGGGACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCATAACCGTTCCCCATCCCCTTCTCTGAGAGGGTGGGGACCCCT  250

seq1  TGGGCATCCCCCCACCATGGCAGTTCAAGTCTCCAAGAGGCTAGAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCCCCCCACCATGGCAGTTCAAGTCTCCAAGAGGCTAGAGGCTT  300

seq1  CCTCCCACTGAGACTAGATAAGGCAGCCCAGTTCAAAGTACATATCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTGAGACTAGATAAGGCAGCCCAGTTCAAAGTACATATCCCAC  350

seq1  GTACAGGCAACAGCTTTTGGGATTGCCTCCCTACCTCCAATTCCAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCAACAGCTTTTGGGATTGCCTCCCTACCTCCAATTCCAGTTGT  400

seq1  TCGTGACTCACATGATGGTCAGTTGTACTGGCTGGTTTTGTATGTCAACT  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCGTGACTCACATTATGGTCAGTTGTACTGGCTGGTTTTGTATGTCAACT  450

seq1  TGACATGAGCTAGAGTCATCAGAAAGGAAAGACTCTCAGTTGAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAGCTAGAGTCATCAGAAAGGAAAGACTCTCAGTTGAGAAAATG  500

seq1  CCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTATTGACCAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTATTGACCAATGGG  550

seq1  GAAGGGCCTAGCCCATTGTGGGTTGTGACATCCTTGGGTCGATGACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCTAGCCCATTGTGGGTTGTGACATCCTTGGGTCGATGACCCTG  600

seq1  AA-TTCTATAAGT  612
      || ||||||||||
seq2  AATTTCTATAAGT  613


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