BAC Information

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BAC

Clone NameB6Ng01-216K23
Chromosome1 (Build37)
Map Location 89,792,114 - 89,793,140
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216K23.bB6Ng01-216K23.g
ACCGA033311GA033312
length1,2071,051
definitionB6Ng01-216K23.b B6Ng01-216K23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaaagagcttacctctaatatgcataagtaatcaagcaagtga
aagccttgtatgataaaaacttcaagtgtttgaagaaagaaatggaagaa
gatatcagaagatggaagagtctcctatgcttatagatctgtaggattca
cataagtgactggaaaaagaacaatctctgcaggactcacaagctcttca
gcaatatgactacccataaatctctgcttggcaagatgcaccctggaaag
tgtagtctgcctggggggagatcactttccagagacctgacctcatcagc
atggagctgacctttcagaaggagttcatttactctgtgctgtggccagg
ggcaggaccttggatataggcagtaagtggcctggaggttagggtacaga
gacggacaagggcagcataccaagacgacaccagctacctgaagcaagat
accttagtgaagtggaaacttcctattctaaaggaaggtaatcctaatgg
tgtttccatatattaaaggagacaaaaaccctgccagccatatcttgtga
ccaaacaaagttttcagtgctgagactgggtttcatctaattcagttgtt
agccaaaaggattccatggaaatccctaaacagcccagtctgttgccaag
acaataggttgctctccacacactgacagcaaggtcccagtgttgacaat
aacacacacacaactcactgaacatggagagctggagctggtgcctgcat
agaaccttcagccccatgctctagcatctatgacatggaaaggtatgctg
caggatagcaaacccaaccacaatatgattgacctacaatctgtcttgat
tataaaatatgttagagcaatggaggtacaaaccttgtgagattaaccaa
ccaatgtctgatttcacttaaggcccactccatgagatggaactcacttc
taacactgcttagtctagatagcctcaagagcaaggcaaaacaaatactt
tgggaatgtttaaaagagatgacaataaatgacttcccactggtgtactg
ctggactcatagtcagaatcttattcagcatcagcacagctgttttcctc
ttgcaagcagaatgggaccaaatcacagagaacccaacgacagagacatt
ccaggaaacggatcctgaaatggcgcatctctctggccctgaaagtggag
tacatct
gaattcaagttttagaaatgatcatcatttattcagacttaacttattta
tgtctacactggattgtctgtatcctcttcctcttcacttcagctttgtc
tgttggaaggagaaatatgaactttatgagaggtgttcttggatgtatta
tttctttccaggtcatgctcagaacaaagttaggttaacaggctcattct
tttcctagttctatccagtgtcatttctgggaagctgctgtgttttcaga
gatgtgggacagtgttgtggccatgcgtaacaaatggagatggctcctca
gtcactctggcttcctgcaagccagacccactgtggctactcatgacctg
atagacagggtctctgaggcagggtttgtccatggggaaagacgttttga
attttcttttcaggtcttttaaaatcttaaatcttgtagttagaatgtca
ttgtcgtcgtagtcgttgtcatctcctcctcctcctcttcttcctcctcc
tcctccccctcccccttcttcttccaactcctcttcctactcctcttctt
catcttactcttcctcctcctccttctttttttttttttttttttttttt
aaccttttgacataccaagaggaataaggaagcaattgtaagtttggtta
gaaggaaaaggtaaaccagccccatgataccctgatcgacacgagggagg
gatggctgtagaaaaggaagcatcatcccctggtactttcttatatgttg
gtgacttccctgccttgggaatataggtgtaaactgggcctttttctgga
tattttgacaagtgaacagccccctggaccaaattatgttgagtgtatat
ttaccagagtacaggtatgcttggactgatagaacttttttctttttaag
gaacactgcacaacagcttcttgggatgcagacacttggcatctgtaaga
ggcttactccattgacctctgtatactctaaggggagcctgaagtgttca
tattgttgcagccatgaatcctggtctagggatagggtttcatggtcagg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89792114_89793140
seq2: B6Ng01-216K23.g_68_1118

seq1  GAATTCAAGTTTTAGAAATGATCATCATTTATTCAGACTTAACTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTTAGAAATGATCATCATTTATTCAGACTTAACTTATTTA  50

seq1  TGTCTACACTGGATTGTCTGTATCCTCTTCCTCTTCACTTCAGCTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACACTGGATTGTCTGTATCCTCTTCCTCTTCACTTCAGCTTTGTC  100

seq1  TGTTGGAAGGAGAAATATGAACTTTATGAGAGGTGTTCTTGGATGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAGGAGAAATATGAACTTTATGAGAGGTGTTCTTGGATGTATTA  150

seq1  TTTCTTTCCAGGTCATGCTCAGAACAAAGTTAGGTTAACAGGCTCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCAGGTCATGCTCAGAACAAAGTTAGGTTAACAGGCTCATTCT  200

seq1  TTTCCTAGTTCTATCCAGTGTCATTTCTGGGAAGCTGCTGTGTTTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTTCTATCCAGTGTCATTTCTGGGAAGCTGCTGTGTTTTCAGA  250

seq1  GATGTGGGACAGTGTTGTGGCCATGCGTAACAAATGGAGATGGCTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGACAGTGTTGTGGCCATGCGTAACAAATGGAGATGGCTCCTCA  300

seq1  GTCACTCTGGCTTCCTGCAAGCCAGACCCACTGTGGCTACTCATGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTGGCTTCCTGCAAGCCAGACCCACTGTGGCTACTCATGACCTG  350

seq1  ATAGACAGGGTCTCTGAGGCAGGGTTTGTCCATGGGGAAAGACGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGGTCTCTGAGGCAGGGTTTGTCCATGGGGAAAGACGTTTTGA  400

seq1  ATTTTCTTTTCAGGTCTTTTAAAATCTTAAATCTTGTAGTTAGAATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCAGGTCTTTTAAAATCTTAAATCTTGTAGTTAGAATGTCA  450

seq1  TTGTCGTCGTAGTCGTTGTCATCTCCTCCTCCTCCTCTTCTTCCTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGTCGTAGTCGTTGTCATCTCCTCCTCCTCCTCTTCTTCCTCCTCC  500

seq1  TCCTCCCCCTCCCCCTTCTTCTTCCAACTCCTCTTCCTACTCCTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCTCCCCCTTCTTCTTCCAACTCCTCTTCCTACTCCTCTTCTT  550

seq1  CATCTTACTCTTCCTCCTCCTCCTTCTTTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTCTTCCTCCTCCTCCTTCTTTTTTTTTTTTTTTTTTTTTTTT  600

seq1  AACCTTTTGACATACCAAGAGGAATAAGGAAGCAATTGTAAGTTTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTGACATACCAAGAGGAATAAGGAAGCAATTGTAAGTTTGGTTA  650

seq1  GAAGGAAAAGGTAAACCAGCCCCATGATA-CCTGATCGACACGAGGGAGG  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAGGAAAAGGTAAACCAGCCCCATGATACCCTGATCGACACGAGGGAGG  700

seq1  GATGGCTGTAGAAAAGGAAGCATCATCCCCTGGTAC-TTCTTATATG-TG  747
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GATGGCTGTAGAAAAGGAAGCATCATCCCCTGGTACTTTCTTATATGTTG  750

seq1  GTGACTTCCCTGCCTTGGG-ATAT-GGTGTAAACTGG--CCTTTTCTGGA  793
      ||||||||||||||||||| |||| ||||||||||||  | |||||||||
seq2  GTGACTTCCCTGCCTTGGGAATATAGGTGTAAACTGGGCCTTTTTCTGGA  800

seq1  TA-TTTGACAAGTG-ACAG-CCCCTGGACC-AAGTATG-TGAGTG--AAT  836
      || ||||||||||| |||| |||||||||| || |||| ||||||   ||
seq2  TATTTTGACAAGTGAACAGCCCCCTGGACCAAATTATGTTGAGTGTATAT  850

seq1  TTA-CAGAGTACAGGTA-GCTT-GACTGATAGAAC-TTTTTCTTTT--AG  880
      ||| ||||||||||||| |||| |||||||||||| ||||||||||  ||
seq2  TTACCAGAGTACAGGTATGCTTGGACTGATAGAACTTTTTTCTTTTTAAG  900

seq1  G-ACACTGCAC-ACAGCTTCCT-GGATGCAGACACTTGGCATCTGTAAGA  927
      | ||||||||| |||||||| | |||||||||||||||||||||||||||
seq2  GAACACTGCACAACAGCTTCTTGGGATGCAGACACTTGGCATCTGTAAGA  950

seq1  GGCTTACT-CATGGACCTCTGTATA-TCTTAAGGGAGCCTGAGGTGTTCA  975
      |||||||| ||| |||||||||||| ||| | |||||||||| |||||||
seq2  GGCTTACTCCATTGACCTCTGTATACTCTAAGGGGAGCCTGAAGTGTTCA  1000

seq1  TATGTTTGCAGCCATG-ATCTTGGGTCTAGGATTAGGGTTTTCATGGTCA  1024
      |||  ||||||||||| ||| | ||||||||  ||||| |||||||||||
seq2  TATTGTTGCAGCCATGAATCCT-GGTCTAGGGATAGGG-TTTCATGGTCA  1048

seq1  GGA  1027
      |||
seq2  GGA  1051