BAC Information

Click to search

BAC

Clone NameB6Ng01-220A11
Chromosome1 (Build37)
Map Location 177,539,692 - 177,620,798
singlet/doubletdoublet
Overlap geneFh1, Kmo, Opn3, Chml
Upstream geneFmn2, Grem2, Rgs7
Downstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220A11.bB6Ng01-220A11.g
ACCGA035693GA035694
length1,1751,133
definitionB6Ng01-220A11.b B6Ng01-220A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,539,692 - 177,540,850)(177,619,663 - 177,620,798)
sequence
gaattcagcctagaaatatctacaagatgcataagctatgtgaagaacgt
gagtagcaatgcatgtggtccccaacctgtgagtgctgctacttttgcgg
ccaccttttctgcgaaaccgatcctggtgtttaaccccgtccccacagca
gtgcctccagcagcgagctcgtagattcttggcatggcggcttttattct
caccatcgcatactggacttgctgaacgtaaccactgaattcctgagaag
agaaatcactgtaagaacaaactcctatcagctacaatgcactctaatgg
cactaaacagaagattatgttaattcattcacgtgataaagaggaagggc
tacaaatctacaaggcaaataataacatgtagcttagtttataaccaaac
gtcccaacagagtcaagcaaagaacacatgaaataaacctttaagaatag
ctccactacactgaactattgctccacctacaatccacccagtgagctga
tcccctcccccacatctgactgtagcccaaagaaaaattactaaatattc
tccaaagacaaaaagaaaatagaaatacttctatacaattctagcttaaa
gacctgagagggaagccaagaagcaactttacaaagacctgagcgtgaag
taaggagtacaacagcctgcggggtgggcggggtccagcgtcgctgtgcc
ctcaaatgccagcagccgcaggcacattacttctcacaccacactttaaa
gcaaccatcaatcttcctaccatatttgcagcattgtgaaccactaacaa
ctatgcagggacaaaaaccttaccctctctgtatttgacaattggcctta
tctagtaagccaagataaactaaatcttttccctacctaaaatactgaaa
aacggaatactttggattaggattagggtttcagtatattctaaagaaaa
cattggaaaaggtagatctaattcatgagatgctaacttcttctcactct
ctcccccctccctcctttttcccccattgcatgtgtgtatatgagtgcca
caccataaaataaacagttgttatgccaccttaggagcattttatttgaa
agttgctaaacctgaaaaagaacaaatttcttaattaaatccatgttttt
ctcataaagttaaaaaagaaaatag

gaattcctgctggggtctgtcagcaccaggagagatttttttttttaaag
actacaagaaacattcgccctggttttacccgagggttcctttattcagg
gcatccagtctttctttgaatcatgtcatttattcccatcctaaaatctg
atgtagatcttctggggttagaggcttgaaaataagttacttcctggaga
caagtgtagagtgaggtgacttcagaccgcacagcattcttagcaagtaa
tttctttgcccagaatatgctcttgagtagggtaaaggatggagatggag
aagactcttcccttttctgttcctaaaccaggactaatcaattctgagta
ctgaaggagagggcaattttaactgctggaagttgctagctgcttgcttc
aggctttggtgatgctgatggtactggtctgacggtacaagggtgggtct
tatggctaccccattgtctgggctttcccaagccattcattctcgaaggc
tgccagtttccccatctttgttatctactattgagctttctgtggttaat
gtcatctatcccatttgctttgtatttctgaagggtattgtgttctgtat
gtacccttggtgcttataaccccctcccctcttactaccacctcagcctt
gttctatgcctggaggaagtgcatgcatgtttatactttagatatcctca
taggttttctctcccgctttgtactctgctagaagcgagagtaagcagtt
cacaaattcttgcatatatatatgcacaaggggaccaggcaattgcttca
ttttgggctctgctcctggcatctcggagaaggctaaaaataagaggaat
ccctgataatcttggtcagaggtttccaccagctggccttgttaggatca
ctgtttcagttaaactgatccgtccagtcgtgacctagtaagttcattta
aatcccaactgaatggcttattttataaatgtcagaataccattctcttc
ttggacctgcacttagatgtcagcagatttatgtagtgaaaggtagagga
gcaaagaaccacttactgcctacagtatattgatgagccaatcaaaagcc
tggccattggggtgtgctagtgtgttagctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177539692_177540850
seq2: B6Ng01-220A11.b_43_1217

seq1  GAATTCAGCCTAGAAATATCTACAAGATGCATAAGCTATGTGAAGAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTAGAAATATCTACAAGATGCATAAGCTATGTGAAGAACGT  50

seq1  GAGTAGCAATGCATGTGGTCCCCAACCTGTGAGTGCTGCTACTTTTGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAATGCATGTGGTCCCCAACCTGTGAGTGCTGCTACTTTTGCGG  100

seq1  CCACCTTTTCTGCGAAACCGATCCTGGTGTTTAACCCCGTCCCCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTTCTGCGAAACCGATCCTGGTGTTTAACCCCGTCCCCACAGCA  150

seq1  GTGCCTCCAGCAGCGAGCTCGTAGATTCTTGGCATGGCGGCTTTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCAGCAGCGAGCTCGTAGATTCTTGGCATGGCGGCTTTTATTCT  200

seq1  CACCATCGCATACTGGACTTGCTGAACGTAACCACTGAATTCCTGAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCGCATACTGGACTTGCTGAACGTAACCACTGAATTCCTGAGAAG  250

seq1  AGAAATCACTGTAAGAACAAACTCCTATCAGCTACAATGCACTCTAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTGTAAGAACAAACTCCTATCAGCTACAATGCACTCTAATGG  300

seq1  CACTAAACAGAAGATTATGTTAATTCATTCACGTGATAAAGAGGAAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACAGAAGATTATGTTAATTCATTCACGTGATAAAGAGGAAGGGC  350

seq1  TACAAATCTACAAGGCAAATAATAACATGTAGCTTAGTTTATAACCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTACAAGGCAAATAATAACATGTAGCTTAGTTTATAACCAAAC  400

seq1  GTCCCAACAGAGTCAAGCAAAGAACACATGAAATAAACCTTTAAGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACAGAGTCAAGCAAAGAACACATGAAATAAACCTTTAAGAATAG  450

seq1  CTCCACTACACTGAACTATTGCTCCACCTACAATCCACCCAGTGAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTACACTGAACTATTGCTCCACCTACAATCCACCCAGTGAGCTGA  500

seq1  TCCCCTCCCCCACATCTGACTGTAGCCCAAAGAAAAATTACTAAATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCCACATCTGACTGTAGCCCAAAGAAAAATTACTAAATATTC  550

seq1  TCCAAAGACAAAAAGAAAATAGAAATACTTCTATACAATTCTAGCTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACAAAAAGAAAATAGAAATACTTCTATACAATTCTAGCTTAAA  600

seq1  GACCTGAGAGGGAAGCCAAGAAGCAACTTTACAAAGACCTGAGCGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGAGGGAAGCCAAGAAGCAACTTTACAAAGACCTGAGCGTGAAG  650

seq1  TAAGGAGTACAACAGCCTGCGGGGTGGGCGGGGTCCAGCGTCGCTGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTACAACAGCCTGCGGGGTGGGCGGGGTCCAGCGTCGCTGTGCC  700

seq1  CTCAAATGCCAGCAGCCGCAGGCACATTACTTCTCACACCACACTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGCCAGCAGCCGCAGGCACATTACTTCTCACACCACACTTTAAA  750

seq1  GCAACCATCAATCTTCCTACCATATTTGCAGCATTGTGAACCACTAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATCAATCTTCCTACCATATTTGCAGCATTGTGAACCACTAACAA  800

seq1  CTATGCAGGGACAAAAACCTTACCCTCTCTGTATTTGACAATTGGCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGGGACAAAAACCTTACCCTCTCTGTATTTGACAATTGGCCTTA  850

seq1  TCTAGTAAGCCAAGATAAACTAAATCTTTTCCCTACCTAAAATACTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAGCCAAGATAAACTAAATCTTTTCCCTACCTAAAATACTGAAA  900

seq1  AACGGAATACTTTGGATTAGGATTAGGGTTTCAGTATATTCTAAAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAATACTTTGGATTAGGATTAGGGTTTCAGTATATTCTAAAGAAAA  950

seq1  CATTGGAAAAGGTAGATCTAATTCATGAGATGCTAACTTCTTCTCACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAAAGGTAGATCTAATTCATGAGATGCTAACTTCTTCTCACTCT  1000

seq1  CT-CCCCCTCCCTCCTTTTTCCCCCATTGCATGTGTGTATATGAGTG-CA  1048
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCCCCTCCCTCCTTTTTCCCCCATTGCATGTGTGTATATGAGTGCCA  1050

seq1  CA-CATAAA--TAACAGTTG-TATGC--ACTTA-GAGCATGTATTTTGAA  1091
      || ||||||   |||||||| |||||   |||| |||||| |  ||||||
seq2  CACCATAAAATAAACAGTTGTTATGCCACCTTAGGAGCATTTTATTTGAA  1100

seq1  AGTTGCAAAACCTGAAAA--GACAA--TTCTAATTAAAAATCATG--TTT  1135
      |||||| |||||||||||   ||||  |||| | | |||  ||||  |||
seq2  AGTTGCTAAACCTGAAAAAGAACAAATTTCTTAATTAAATCCATGTTTTT  1150

seq1  CTCATAAAG-TAAAAAAGAAAATAG  1159
      ||||||||| |||||||||||||||
seq2  CTCATAAAGTTAAAAAAGAAAATAG  1175


seq1: chr1_177619663_177620798
seq2: B6Ng01-220A11.g_63_1195 (reverse)

seq1  TGCAGGCTACCACACTTACACACCCCACT-GCCAGCCTTTTGATT-GCTC  48
      |||| |||| ||||||  ||||||||| | ||||| ||||||||| ||||
seq2  TGCA-GCTAACACACTAGCACACCCCAATGGCCAGGCTTTTGATTGGCTC  49

seq1  ATC-ATATACTGTA-GCAGTAAGT-GTTCTTTGGCTCCTCTACTTTTCAC  95
      ||| |||||||||| ||||||||| ||||||| |||||||||| ||||||
seq2  ATCAATATACTGTAGGCAGTAAGTGGTTCTTT-GCTCCTCTACCTTTCAC  98

seq1  TACCATTAAATCTGCTGACATCTAAGTGCAGGTCCAAGGAAGAGAATGGT  145
      |||   ||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TAC--ATAAATCTGCTGACATCTAAGTGCAGGTCCAA-GAAGAGAATGG-  144

seq1  TATTCTGACATTTATAAAATAAGCCATTCAGTTGGGATTTAAATGAACTT  195
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTCTGACATTTATAAAATAAGCCATTCAGTTGGGATTTAAATGAAC-T  193

seq1  TACTAGGTCACCGACTGGACGGATCAGTTTAACTGAAACAGTGATCCTAA  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTCA-CGACTGGACGGATCAGTTTAACTGAAACAGTGATCCTAA  242

seq1  CAAGGCCAGCTGGTGGAAACCTCTGACCAAGATTATCAGGGATTCCTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCTGGTGGAAACCTCTGACCAAGATTATCAGGGATTCCTCTT  292

seq1  ATTTTTAGCCTTCTCCGAGATGCCAGGAGCAGAGCCCAAAATGAAGCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCCTTCTCCGAGATGCCAGGAGCAGAGCCCAAAATGAAGCAAT  342

seq1  TGCCTGGTCCCCTTGTGCATATATATATGCAAGAATTTGTGAACTGCTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTCCCCTTGTGCATATATATATGCAAGAATTTGTGAACTGCTTA  392

seq1  CTCTCGCTTCTAGCAGAGTACAAAGCGGGAGAGAAAACCTATGAGGATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGCTTCTAGCAGAGTACAAAGCGGGAGAGAAAACCTATGAGGATAT  442

seq1  CTAAAGTATAAACATGCATGCACTTCCTCCAGGCATAGAACAAGGCTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTATAAACATGCATGCACTTCCTCCAGGCATAGAACAAGGCTGAG  492

seq1  GTGGTAGTAAGAGGGGAGGGGGTTATAAGCACCAAGGGTACATACAGAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTAAGAGGGGAGGGGGTTATAAGCACCAAGGGTACATACAGAAC  542

seq1  ACAATACCCTTCAGAAATACAAAGCAAATGGGATAGATGACATTAACCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCCTTCAGAAATACAAAGCAAATGGGATAGATGACATTAACCAC  592

seq1  AGAAAGCTCAATAGTAGATAACAAAGATGGGGAAACTGGCAGCCTTCGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCAATAGTAGATAACAAAGATGGGGAAACTGGCAGCCTTCGAG  642

seq1  AATGAATGGCTTGGGAAAGCCCAGACAATGGGGTAGCCATAAGACCCACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGGCTTGGGAAAGCCCAGACAATGGGGTAGCCATAAGACCCACC  692

seq1  CTTGTACCGTCAGACCAGTACCATCAGCATCACCAAAGCCTGAAGCAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCGTCAGACCAGTACCATCAGCATCACCAAAGCCTGAAGCAAGC  742

seq1  AGCTAGCAACTTCCAGCAGTTAAAATTGCCCTCTCCTTCAGTACTCAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAACTTCCAGCAGTTAAAATTGCCCTCTCCTTCAGTACTCAGAA  792

seq1  TTGATTAGTCCTGGTTTAGGAACAGAAAAGGGAAGAGTCTTCTCCATCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGTCCTGGTTTAGGAACAGAAAAGGGAAGAGTCTTCTCCATCTC  842

seq1  CATCCTTTACCCTACTCAAGAGCATATTCTGGGCAAAGAAATTACTTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTACCCTACTCAAGAGCATATTCTGGGCAAAGAAATTACTTGCT  892

seq1  AAGAATGCTGTGCGGTCTGAAGTCACCTCACTCTACACTTGTCTCCAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTGTGCGGTCTGAAGTCACCTCACTCTACACTTGTCTCCAGGA  942

seq1  AGTAACTTATTTTCAAGCCTCTAACCCCAGAAGATCTACATCAGATTTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTATTTTCAAGCCTCTAACCCCAGAAGATCTACATCAGATTTTA  992

seq1  GGATGGGAATAAATGACATGATTCAAAGAAAGACTGGATGCCCTGAATAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAATAAATGACATGATTCAAAGAAAGACTGGATGCCCTGAATAA  1042

seq1  AGGAACCCTCGGGTAAAACCAGGGCGAATGTTTCTTGTAGTCTTTAAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCTCGGGTAAAACCAGGGCGAATGTTTCTTGTAGTCTTTAAAAA  1092

seq1  AAAAAATCTCTCCTGGTGCTGACAGACCCCAGCAGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTCTCCTGGTGCTGACAGACCCCAGCAGGAATTC  1133


| Home | SequenceCutter | Blast | Download |