BAC Information

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BAC

Clone NameB6Ng01-220G23
Chromosome12 (Build37)1 (Build37)
Map Location 75,677,657 - 75,678,71881,458,091 - 81,459,116
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220G23.bB6Ng01-220G23.g
ACCGA035992GA035993
length1,0661,178
definitionB6Ng01-220G23.b B6Ng01-220G23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,677,657 - 75,678,718)(81,458,091 - 81,459,116)
sequence
gaattcagagacagtatccagtgcatctatatcttatccatccatctctg
attttccccagacccttcttacatttctctcccccaacttcataacccct
gagtccatttagtgatgcccatgtgtgtgctcattcacaggggcatgggc
atctttaaagctcctttcctccctcagcacctgacaatggcaatagcccc
tcagctggggaaggaaacttgagtgtcttcttccctccatgttagaattt
ttaactgttcttgatcttaggatgctcttgtgttgaaaagaatggctgct
tatgagtttgcatgtgctgtacaagtgacctcaattctgactgcccgcat
cccaccgtatttgatacttagatacagtttcttccctctcctttctcctt
ttgagatattgatgacaacctcaagagatagcactgaactccaccactag
agcccttctgatacctttactaattgacagaatttcttttaattccaatc
cacataaacatggaactattcattaaggatttagagattttggctgagag
ataagaggttcttgatgatataatgagtatctgtagttattgtttaagaa
acagttattgatttcttatatttagctatagatatttcattggtatttgt
caccttctgcaacagtgtagctagagtgacaacacctttttttgcttcag
agacacacatacatgatttacatcctaatacttctctttttaatgttgta
actttgggaattttgaccctgagcctgtgtttactttgctgattggttaa
ttttgagacttggtcttactcagggaccacccattgtgcccaggtctgtg
cttcctctagttatgtctaaaattattcctctcagatatgttatgaaaaa
tgaagaatgcaatgtacagaaagaagtgttcttttaggaatatgtaaaat
actaatacttccttccatagagttaagttttaaaatatgtgctatgtaat
gttactactttagtcaattaatcttgcttgtgagcatgcctaggttcggg
tttatcaatgacatga
gaattctttgtttagctctgaaccccatttttaatgaggttatttgattt
tctggagtccaccttcttgagttattttatatatatatatatatatatat
atatatatatatatatatatatatattgctgttcatcaccaaacgaaatc
agggcaggaactcacaaaaagcaggaacatagaggcaggagtggatgcag
aagccattaaagaatgcagcttgctttcttatagaacccagaaataccag
cccaggaatggcaccatccacaatgggccctcccacccttgatcaataat
taagaaaatcccttacagctggatctcatggaggcattcctcaagggagg
ctcctttctctttgataactccagcttgtgttaagttgatacacaaaacc
agccagtacacagggttaaagaacctatatgtctgttttaattggaaata
attttatataatatattctggtcatgatttcccctccttacttcttccaa
gatcttcccaaccttcctacctatctaactgaatgttttccatctctcta
actctttagaaaacaaacaagcaaataacaaagaatcaaacaagtcataa
ttttaaaaggcccaaaacagagcaagtcacaggacctatacagatttaag
ccagatagggtcccagtgctgagggaaaattggacactcaagaacctatt
tccaattgacaaacagttgcataagataaactcacaccctccaatagtgt
ctcacagagtatataaaaaacaaatgaggaaaagcccatttggcagcaga
agatggcctttcctgtgcacgtgtgtgcacacataaagcacacagactca
catgcacacaaaccctcaatgatatttttgtagacttttattgcagcatg
tttttttttcttttagaacaagtatttatgtagggcttggatagatcccc
attaaatttcctagtgtatgcttttactacaagcaacacacattgaagac
cagtcttccgagaagcaaatgtttaatgattccttttcgttccctcttgc
aaagataagttcacatcactggaagaacatctggaagtcacacacttgtc
ctttagcaacagactgtacctttggctctttctgggggggttattcctgt
accagggctcgggaacctgcctaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75677657_75678718
seq2: B6Ng01-220G23.b_43_1108 (reverse)

seq1  TCATGTCATTGATAAACCC-AACCTAGGCATGCTCACAAGC-AGA-TAAA  47
      ||||||||||||||||||| ||||||||||||||||||||| ||| ||| 
seq2  TCATGTCATTGATAAACCCGAACCTAGGCATGCTCACAAGCAAGATTAAT  50

seq1  TGACTAAAGTAGTAACATTTACATAGCACATATTTTAAAACTTAACTCTA  97
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGACTAAAGTAGTAACA-TTACATAGCACATATTTTAAAACTTAACTCTA  99

seq1  TGGA--GGAGTATTAGTATTTTACATATTCCTAAAAGAACACTTCTTTCT  145
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAGTATTAGTATTTTACATATTCCTAAAAGAACACTTCTTTCT  149

seq1  GTACATTGCATTCTTCATTTTTCATAACATATCTGAGAGGAATAATTTTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGCATTCTTCATTTTTCATAACATATCTGAGAGGAATAATTTTA  199

seq1  GACATAACTAGAGGAAGCACAGACCTGGGCACAAT-GGTGGTCCCTGAGT  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACATAACTAGAGGAAGCACAGACCTGGGCACAATGGGTGGTCCCTGAGT  249

seq1  AAGACCAAGTCTCAAAATTAACCAATCAGCAAAGTAAACACAGGCTCAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGTCTCAAAATTAACCAATCAGCAAAGTAAACACAGGCTCAGG  299

seq1  GTCAAAATTCCCAAAGTTACAACATTAAAAAGAGAAGTATTAGGATGTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTCCCAAAGTTACAACATTAAAAAGAGAAGTATTAGGATGTAA  349

seq1  ATCATGTATGTGTGTCTCTGAAGCAAAAAAAGGTGTTGTCACTCTAGCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTATGTGTGTCTCTGAAGCAAAAAAAGGTGTTGTCACTCTAGCTA  399

seq1  CACTGTTGCAGAAGGTGACAAATACCAATGAAATATCTATAGCTAAATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCAGAAGGTGACAAATACCAATGAAATATCTATAGCTAAATAT  449

seq1  AAGAAATCAATAACTGTTTCTTAAACAATAACTACAGATACTCATTATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAATAACTGTTTCTTAAACAATAACTACAGATACTCATTATAT  499

seq1  CATCAAGAACCTCTTATCTCTCAGCCAAAATCTCTAAATCCTTAATGAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAACCTCTTATCTCTCAGCCAAAATCTCTAAATCCTTAATGAAT  549

seq1  AGTTCCATGTTTATGTGGATTGGAATTAAAAGAAATTCTGTCAATTAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATGTTTATGTGGATTGGAATTAAAAGAAATTCTGTCAATTAGTA  599

seq1  AAGGTATCAGAAGGGCTCTAGTGGTGGAGTTCAGTGCTATCTCTTGAGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATCAGAAGGGCTCTAGTGGTGGAGTTCAGTGCTATCTCTTGAGGT  649

seq1  TGTCATCAATATCACAAAAGGAGAAAGGAGAGGGAAGAAAATCTATTTAA  694
      ||||||||||||| |||||||||||||||||||||||||| | ||| |||
seq2  TGTCATCAATATCTCAAAAGGAGAAAGGAGAGGGAAGAAACTGTATCTAA  699

seq1  GTATCAAATATGGTGGGATGCGGGCAGTCAGAATTGAGGTCACTTGTACA  744
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAATACGGTGGGATGCGGGCAGTCAGAATTGAGGTCACTTGTACA  749

seq1  GCACATGCAAACTCATAAGCAGCCATTCTTTTCAACACAAGAGCATCCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCAAACTCATAAGCAGCCATTCTTTTCAACACAAGAGCATCCTA  799

seq1  AGATCAAGAACAGTTAAAAATTCTAACATGGAGGGAAGAAGACACTCAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGAACAGTTAAAAATTCTAACATGGAGGGAAGAAGACACTCAAG  849

seq1  TTTCCTTCCCTAGCTGAGGGGCTATTGACATTGTCAGGTGCTGAGGGAGG  894
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTTCCTTCCCCAGCTGAGGGGCTATTGCCATTGTCAGGTGCTGAGGGAGG  899

seq1  AAAGGAGCTTTAAAGATGCCCATGCCCCTGTGAATGACTACACACATGGG  944
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AAAGGAGCTTTAAAGATGCCCATGCCCCTGTGAATGAGCACACACATGGG  949

seq1  CATCACTAAATGGACTCAGGGGTTATGAAGTTGGGGGAGAGAAATGTAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAAATGGACTCAGGGGTTATGAAGTTGGGGGAGAGAAATGTAAG  999

seq1  AAGGGTCTGGGGAAAATCAGAGATGGATGGATAAGATATAGATGCATTGT  1044
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  AAGGGTCTGGGGAAAATCAGAGATGGATGGATAAGATATAGATGCACTGG  1049

seq1  ATACTTGTCTCTGAATTC  1062
      |||| |||||||||||||
seq2  ATAC-TGTCTCTGAATTC  1066

seq1: chr1_81458091_81459116
seq2: B6Ng01-220G23.g_189_1242

seq1  ATTGCTGTTCATCACCAAACGAAATCAGGGCAGGAACTCACAAAAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTCATCACCAAACGAAATCAGGGCAGGAACTCACAAAAAGCAG  50

seq1  GAACATAGAGGCAGGAGTGGATGCAGAAGCCATTAAAGAATGCAGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGAGGCAGGAGTGGATGCAGAAGCCATTAAAGAATGCAGCTTGC  100

seq1  TTTCTTATAGAACCCAGAAATACCAGCCCAGGAATGGCACCATCCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATAGAACCCAGAAATACCAGCCCAGGAATGGCACCATCCACAAT  150

seq1  GGGCCCTCCCACCCTTGATCAATAATTAAGAAAATCCCTTACAGCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTCCCACCCTTGATCAATAATTAAGAAAATCCCTTACAGCTGGAT  200

seq1  CTCATGGAGGCATTCCTCAAGGGAGGCTCCTTTCTCTTTGATAACTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAGGCATTCCTCAAGGGAGGCTCCTTTCTCTTTGATAACTCCAG  250

seq1  CTTGTGTTAAGTTGATACACAAAACCAGCCAGTACACAGGGTTAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTAAGTTGATACACAAAACCAGCCAGTACACAGGGTTAAAGAAC  300

seq1  CTATATGTCTGTTTTAATTGGAAATAATTTTATATAATATATTCTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTCTGTTTTAATTGGAAATAATTTTATATAATATATTCTGGTCA  350

seq1  TGATTTCCCCTCCTTACTTCTTCCAAGATCTTCCCAACCTTCCTACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCCTCCTTACTTCTTCCAAGATCTTCCCAACCTTCCTACCTAT  400

seq1  CTAACTGAATGTTTTCCATCTCTCTAACTCTTTAGAAAACAAACAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGAATGTTTTCCATCTCTCTAACTCTTTAGAAAACAAACAAGCAA  450

seq1  ATAACAAAGAATCAAACAAGTCATAATTTTAAAAGGCCCAAAACAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGAATCAAACAAGTCATAATTTTAAAAGGCCCAAAACAGAGCA  500

seq1  AGTCACAGGACCTATACAGATTTAAGCCAGATAGGGTCCCAGTGCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGACCTATACAGATTTAAGCCAGATAGGGTCCCAGTGCTGAGG  550

seq1  GAAAATTGGACACTCAAGAACCTATTTCCAATTGACAAACAGTTGCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACACTCAAGAACCTATTTCCAATTGACAAACAGTTGCATAA  600

seq1  GATAAACTCACACCCTCCAATAGTGTCTCACAGAGTATATAAAAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTCACACCCTCCAATAGTGTCTCACAGAGTATATAAAAAACAAA  650

seq1  TGAGGAAAAGCCCA-TTGGCAGCAGAAGATGGCC-TTCCTGTGCACGTGT  698
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGAGGAAAAGCCCATTTGGCAGCAGAAGATGGCCTTTCCTGTGCACGTGT  700

seq1  GTGCACACAT-AAGCACACAGACTCACATGCACACAAA-CCTCAATGATA  746
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  GTGCACACATAAAGCACACAGACTCACATGCACACAAACCCTCAATGATA  750

seq1  TTTTTGTAGACTTT--ATGCAGCATG-TTTTTTTTCTTTAAGAACAAGTA  793
      ||||||||||||||   ||||||||| |||||||||||| ||||||||||
seq2  TTTTTGTAGACTTTTATTGCAGCATGTTTTTTTTTCTTTTAGAACAAGTA  800

seq1  -TTATGTA-GGCTT-GATAGATCCCAATTAAATTTCCTAGTGTATGCTTT  840
       ||||||| ||||| |||||||||| ||||||||||||||||||||||||
seq2  TTTATGTAGGGCTTGGATAGATCCCCATTAAATTTCCTAGTGTATGCTTT  850

seq1  TACTACAAGC-ACACACATGAAAAACCAGTCTT-CGAGAAGCAAATGTTT  888
      |||||||||| ||||||||  || ||||||||| ||||||||||||||||
seq2  TACTACAAGCAACACACATTGAAGACCAGTCTTCCGAGAAGCAAATGTTT  900

seq1  AATGATTCCTTT--CTTCCCTC-TGGAAAGATTATGTCACATCACT-GAA  934
      ||||||||||||   ||||||| || |||||| |  |||||||||| |||
seq2  AATGATTCCTTTTCGTTCCCTCTTGCAAAGATAAGTTCACATCACTGGAA  950

seq1  GACAATCTGGAAGT--CACACCTGTCCTTTAGCAACAG-CTGT-CCTT--  978
      ||  ||||||||||  ||||| |||||||||||||||| |||| ||||  
seq2  GAACATCTGGAAGTCACACACTTGTCCTTTAGCAACAGACTGTACCTTTG  1000

seq1  GCTC-TTCTGGGGTG--TA-TCCTGTACCA-GGCTCGGG-ACCTGCAGAA  1022
      |||| |||||||| |  || |||||||||| |||||||| ||||||  ||
seq2  GCTCTTTCTGGGGGGGTTATTCCTGTACCAGGGCTCGGGAACCTGCCTAA  1050

seq1  AAGA  1026
      ||||
seq2  AAGA  1054