BAC Information

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BAC

Clone NameB6Ng01-221P12
Chromosome1 (Build37)
Map Location 66,604,400 - 66,751,834
singlet/doubletdoublet
Overlap geneRpe
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream gene1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221P12.bB6Ng01-221P12.g
ACCGA037117GA037118
length1,1511,120
definitionB6Ng01-221P12.b B6Ng01-221P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,604,400 - 66,605,523)(66,750,705 - 66,751,834)
sequence
ggaattcctctgttttataatacctttatattttctctaattcatttgtt
ttgctcatgtgtatgatataaatatgaatataaaaacacagagatataga
aaacataggtaggttactagatagtaacagatatggatagatgaagaata
ttaagctaggtagaggtagataacagatgatagattgatagatagataga
taaatagatagatagatagatagatagatgatacacatacagacatacat
acacagatgcatagatacatacaaagatacatagatacatatataaacag
aggcaggtatacaggatacaagtgcagatacacagataaaggcatagttg
taaactcgacttctttatcattcaggacttctgggcagaagtggacaaaa
ggactgagttcagatttatattatagtccgttttatcctgcgtgtgtctt
acactattttgtcccaatgtttgtaggtatgacttaagttgaattttgta
ttaaacagtttttgcttttattgcttcattgatcatacaatttatatgtg
acttttttcaaattagcatttttcttcagaatcagagactgctggtaggt
gaaggaaatactagaaacttacagagccaagtcaaacaaatgccaagttc
gtttgtttgctttaaataatcttgctgttatcactagaagcatgtaattc
aaggttgttgatttaaggccagcacggctactcctcacaatcattttctt
tttgtatacatgcatccaatacaactgtaactttttctaagtttacaaaa
aggatccttttcacagttaagcttacaggatgtgccagcacaagaggaaa
gagaagcagtgtgggtaacaggcattttattttgtacactctctccttat
tttatttcagtgaaacttgtaatggtgggtagatggtgactttctaggtc
cgggggtatttactatcatggaccacaactaacacgaacgtccatttgtc
tttaggtacccaaatccattgaataattgatacctcctgtggggactgtt
aaaaacttctctctagtcttcgaactggagaaaaaattgtacttattgtt
cacttattctggcctctaaaactaaggtaaattttgagaaaaaagttcaa
g
gaattctgaaatattagaagatcacaggatttatgaaacattgatatctg
taggaccagaaaagccgaaaaggaagagaaggcaaaaaaaaaaaaaaaaa
aaaagcacgcttaggtcaaagggacagggtgttgaccacagcaggggtag
acgccatcggattaaggatggtcaacgttacacgcaggtgttcggagttt
actgcgctgtaactatcaagtggggtatgagcttcttaagaagtaataaa
tacaataaagcacaaagatggactgagtgataagtgcaagaaggaaggca
ggtgttaatgctaagaatcgataaaaatgacaaaaataggaaaataaaaa
aagagggcctgtcaacaactgattagatgcagcagggagtaaaagagtta
agttttcttctagcccagtgtcatacaatcagtaagtgctggcaggagga
gttaacacaggcaatgaggctacaaagggcagtctcagcattcacctgcc
agtacagatactagaacaatagtcctggggagggaacagcaactcacatt
ctcgggatcgacctgagagggtcagaacgagtgggccatggctacgttct
ctaaccaactgatccctggaggttcaaagattattccactgcctgtccaa
gggccattactgtcagggctcaatcacacaccgatgttaactccaccaga
gatacggggctggtaagcaggcagcaacaggctgttctgcaacttcacac
taagtcttcagtcgcatatactgtgcttgtaccgtgtggtcttgaaaatt
tagtttgctcaatttaggttccatttattattaaaacaatcatgacaagt
atcatgggctgagaagctgagaatctaataaatacaaatttacttgagaa
acacaagaataacatgtaaaagtactgaacctccaagttaagtgacaaat
tcgtgcctcttggtaataaactcaatgacctgggttaataaattcactaa
gagcccatattgcaacaaagttttcatgagaaactaaagcttgtggctta
gcaatacttaatgtgcaaacttaggcatgcaatcagtgtttcggaactac
ggacactgatatcaaaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66604400_66605523
seq2: B6Ng01-221P12.b_49_1198

seq1  GAATTCCTCTGTTTTATAATACCTTTATATTTTCTCTAATTCATTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTTTTATAATACCTTTATATTTTCTCTAATTCATTTGTTT  50

seq1  TGCTCATGTGTATGATATAAATATGAATATAAAAACACAGAGATATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTGTATGATATAAATATGAATATAAAAACACAGAGATATAGAA  100

seq1  AACATAGGTAGGTTACTAGATAGTAACAGATATGGATAGATGAAGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGGTAGGTTACTAGATAGTAACAGATATGGATAGATGAAGAATAT  150

seq1  TAAGCTAGGTAGAGGTAGATAACAGATGATAGATTGATAGATAGATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGGTAGAGGTAGATAACAGATGATAGATTGATAGATAGATAGAT  200

seq1  AAATAGATAGATAGATAGATAGATAGATGATACACATACAGACATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATAGATAGATAGATAGATAGATGATACACATACAGACATACATA  250

seq1  CACAGATGCATAGATACATACAAAGATACATAGATACATATATAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCATAGATACATACAAAGATACATAGATACATATATAAACAGA  300

seq1  GGCAGGTATACAGGATACAAGTGCAGATACACAGATAAAGGCATAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTATACAGGATACAAGTGCAGATACACAGATAAAGGCATAGTTGT  350

seq1  AAACTCGACTTCTTTATCATTCAGGACTTCTGGGCAGAAGTGGACAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGACTTCTTTATCATTCAGGACTTCTGGGCAGAAGTGGACAAAAG  400

seq1  GACTGAGTTCAGATTTATATTATAGTCCGTTTTATCCTGCGTGTGTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTTCAGATTTATATTATAGTCCGTTTTATCCTGCGTGTGTCTTA  450

seq1  CACTATTTTGTCCCAATGTTTGTAGGTATGACTTAAGTTGAATTTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTTGTCCCAATGTTTGTAGGTATGACTTAAGTTGAATTTTGTAT  500

seq1  TAAACAGTTTTTGCTTTTATTGCTTCATTGATCATACAATTTATATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTTTTGCTTTTATTGCTTCATTGATCATACAATTTATATGTGA  550

seq1  CTTTTTTCAAATTAGCATTTTTCTTCAGAATCAGAGACTGCTGGTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCAAATTAGCATTTTTCTTCAGAATCAGAGACTGCTGGTAGGTG  600

seq1  AAGGAAATACTAGAAACTTACAGAGCCAAGTCAAACAAATGCCAAGTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATACTAGAAACTTACAGAGCCAAGTCAAACAAATGCCAAGTTCG  650

seq1  TTTGTTTGCTTTAAATAATCTTGCTGTTATCACTAGAAGCATGTAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCTTTAAATAATCTTGCTGTTATCACTAGAAGCATGTAATTCA  700

seq1  AGGTTGTTGATTTAAGGCCAGCACGGCTACTCCTCACAATCATTTTC-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTTGTTGATTTAAGGCCAGCACGGCTACTCCTCACAATCATTTTCTTT  750

seq1  TTGTATACATGCATCCAATACAACTGTAACTTTTTCTAAGTTTACAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACATGCATCCAATACAACTGTAACTTTTTCTAAGTTTACAAAAA  800

seq1  GGATCCTTTTCACAG-TAAGCTTACAGGATGTGCCAGCACAAGAGGAAAG  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGATCCTTTTCACAGTTAAGCTTACAGGATGTGCCAGCACAAGAGGAAAG  850

seq1  AGAAGCAGTGTGGGTAACAGGCA-TTTATTGTGTACACTCTCTCCTTATT  897
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AGAAGCAGTGTGGGTAACAGGCATTTTATTTTGTACACTCTCTCCTTATT  900

seq1  T--ATTCAGTG-AACCTGTAAT-GTGGGTAGATGGTGAC-TTCTAGTTCG  942
      |   ||||||| ||| |||||| |||||||||||||||| |||||| || 
seq2  TTATTTCAGTGAAACTTGTAATGGTGGGTAGATGGTGACTTTCTAGGTCC  950

seq1  GGGGTAATTTATTAGCATGGA-CACAACTAACAACGACGTCCA-TTGTCT  990
      ||||  ||||| || |||||| |||||||||||   ||||||| ||||||
seq2  GGGGGTATTTACTATCATGGACCACAACTAACACGAACGTCCATTTGTCT  1000

seq1  TTA-GTA-CCAATTCCCATGAAT-ATTGATACCT-CTGT-GGGACTGT--  1033
      ||| ||| |||| |||  ||||| |||||||||| |||| ||||||||  
seq2  TTAGGTACCCAAATCCATTGAATAATTGATACCTCCTGTGGGGACTGTTA  1050

seq1  AAAAC-TCTCTCTAGTCTGTG-ACTGGAG-AAAAATTGAATTTA-TGTTC  1079
      ||||| ||||||||||||  | ||||||| |||||||| | ||| |||||
seq2  AAAACTTCTCTCTAGTCTTCGAACTGGAGAAAAAATTGTACTTATTGTTC  1100

seq1  AATTATT-TGGCCT-TATAAAT-AGGTAAA-TTTAAGAAAAAAG-TCAAG  1124
      | ||||| |||||| || || | ||||||| ||| ||||||||| |||||
seq2  ACTTATTCTGGCCTCTAAAACTAAGGTAAATTTTGAGAAAAAAGTTCAAG  1150

seq1: chr1_66750705_66751834
seq2: B6Ng01-221P12.g_68_1187 (reverse)

seq1  ATCCTTTGATAATTCATGTTGTCCGGTAGTTCCGAAACACCTGATTGCAT  50
      |||||||||||  |||   ||||| |||||||||||||| ||||||||||
seq2  ATCCTTTGATA--TCA--GTGTCC-GTAGTTCCGAAACA-CTGATTGCAT  44

seq1  GCCTAGGTTTTTGCACCTTTTAGTTATGGCTTAGCCACAAGCCTTTAGTT  100
      ||||| |  |||||||   |||  ||| ||| ||||||||| ||||||||
seq2  GCCTAAG--TTTGCAC--ATTAAGTATTGCTAAGCCACAAG-CTTTAGTT  89

seq1  TCTCATGAAAACTTTGGTGCATATTGGGCTCTTAGTGAATTTATTAAACC  150
      |||||||||||||||| ||||   ||||||||||||||||||||| ||||
seq2  TCTCATGAAAACTTTGTTGCAATATGGGCTCTTAGTGAATTTATT-AACC  138

seq1  CAGGTCATTGAGTTTATTACCAAGA-GCACAAATTGTTCACTTAACTTGG  199
      ||||||||||||||||||||||||| |||| ||||  |||||||||||||
seq2  CAGGTCATTGAGTTTATTACCAAGAGGCACGAATTTGTCACTTAACTTGG  188

seq1  AGG-TCAGTACTTTTACATGTTATTCTTGTGTTTCTCAAGTAAATTTGTA  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGTACTTTTACATGTTATTCTTGTGTTTCTCAAGTAAATTTGTA  238

seq1  TTTATTAGATTCTCAGCTTCTCAGCCCATGATACTTGTCATGATTGTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGATTCTCAGCTTCTCAGCCCATGATACTTGTCATGATTGTTTT  288

seq1  AATAATAAATGGAACCTAAATTTGAGCAAACT-AATTTTCAAGACCACAC  347
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AATAATAAATGGAACCTAAA-TTGAGCAAACTAAATTTTCAAGACCACAC  337

seq1  GGTACAAGCACAGTATATGCGACTGAAGACTTAGTGTGAAGTTGCAGAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGCACAGTATATGCGACTGAAGACTTAGTGTGAAGTTGCAGAAC  387

seq1  AGCCTGTTGCTGCCTGCTTACCAGCCCCGTATCTCTGGTGGAGTTAACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTGCTGCCTGCTTACCAGCCCCGTATCTCTGGTGGAGTTAACAT  437

seq1  CGGTGTGTGATTGAGCCCTGACAGTAATGGCCCTTGGACAGGCAGTGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGTGATTGAGCCCTGACAGTAATGGCCCTTGGACAGGCAGTGGAA  487

seq1  TAATCTTTGAACCTCCAGGGATCAGTTGGTTAGAGAACGTAGCCATGGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTGAACCTCCAGGGATCAGTTGGTTAGAGAACGTAGCCATGGCC  537

seq1  CACTCGTTCTGACCCTCTCAGGTCGATCCCGAGAATGTGAGTTGCTGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGTTCTGACCCTCTCAGGTCGATCCCGAGAATGTGAGTTGCTGTTC  587

seq1  CCTCCCCAGGACTATTGTTCTAGTATCTGTACTGGCAGGTGAATGCTGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAGGACTATTGTTCTAGTATCTGTACTGGCAGGTGAATGCTGAG  637

seq1  ACTGCCCTTTGTAGCCTCATTGCCTGTGTTAACTCCTCCTGCCAGCACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTTTGTAGCCTCATTGCCTGTGTTAACTCCTCCTGCCAGCACTT  687

seq1  ACTGATTGTATGACACTGGGCTAGAAGAAAACTTAACTCTTTTACTCCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGTATGACACTGGGCTAGAAGAAAACTTAACTCTTTTACTCCCT  737

seq1  GCTGCATCTAATCAGTTGTTGACAGGCCCTCTTTTTTTATTTTCCTATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTAATCAGTTGTTGACAGGCCCTCTTTTTTTATTTTCCTATTT  787

seq1  TTGTCATTTTTATCGATTCTTAGCATTAACACCTGCCTTCCTTCTTGCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTTATCGATTCTTAGCATTAACACCTGCCTTCCTTCTTGCAC  837

seq1  TTATCACTCAGTCCATCTTTGTGCTTTATTGTATTTATTACTTCTTAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTCAGTCCATCTTTGTGCTTTATTGTATTTATTACTTCTTAAGA  887

seq1  AGCTCATACCCCACTTGATAGTTACAGCGCAGTAAACTCCGAACACCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATACCCCACTTGATAGTTACAGCGCAGTAAACTCCGAACACCTGC  937

seq1  GTGTAACGTTGACCATCCTTAATCCGATGGCGTCTACCCCTGCTGTGGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACGTTGACCATCCTTAATCCGATGGCGTCTACCCCTGCTGTGGTC  987

seq1  AACACCCTGTCCCTTTGACCTAAGCGTGCTTTTTTTTTTTTTTTTTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTGTCCCTTTGACCTAAGCGTGCTTTTTTTTTTTTTTTTTTTTT  1037

seq1  GCCTTCTCTTCCTTTTCGGCTTTTCTGGTCCTACAGATATCAATGTTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTTCCTTTTCGGCTTTTCTGGTCCTACAGATATCAATGTTTCA  1087

seq1  TAAATCCTGTGATCTTCTAATATTTCAGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  TAAATCCTGTGATCTTCTAATATTTCAGAATTC  1120